genome.fa.s79.2.7.7.80.10.50.1000.53.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167904.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_17, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  21107920

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   

This is table  53  of  121  ( 14423 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9201332--9201384	21	2.5	22	75	19	60	49	5	0	45	1.26
9201540--9201638	36	3.0	31	72	16	81	50	3	1	45	1.23
9201680--9201730	17	2.9	18	77	16	54	35	0	3	60	1.15
9201698--9201782	36	2.3	36	82	9	93	43	1	2	52	1.21
9201899--9201951	6	9.0	6	78	17	58	49	0	1	49	1.12
9201899--9201947	17	2.9	18	79	11	59	48	0	2	48	1.12
9201917--9201994	25	3.0	25	73	14	59	47	3	2	46	1.34
9202022--9202060	17	2.3	17	86	8	53	51	0	2	46	1.14
9202732--9202793	17	3.4	17	68	20	52	35	3	9	51	1.51
9202739--9202805	22	3.3	22	68	23	65	34	4	10	50	1.57
9202995--9203053	13	4.6	13	69	26	54	47	1	1	49	1.21
9202997--9203069	27	2.7	27	74	16	71	46	1	1	50	1.18
9203140--9203236	11	8.6	11	66	24	51	44	1	3	51	1.24
9203388--9203442	21	2.7	21	81	10	69	56	1	0	41	1.10
9203530--9203630	18	5.1	18	73	24	62	51	0	0	47	1.07
9203526--9203647	19	5.8	22	70	22	68	50	0	0	48	1.06
9203529--9203630	42	2.5	41	77	14	104	50	0	0	48	1.07
9204104--9204155	21	2.5	21	82	11	63	48	1	0	50	1.12
9204120--9204156	18	2.1	18	89	0	56	48	2	0	48	1.15
9204125--9204168	21	2.2	19	84	15	54	45	4	0	50	1.22
9204671--9204735	10	7.1	10	72	22	54	56	0	0	43	0.99
9204662--9204775	35	3.3	34	78	12	99	51	1	2	43	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9204677--9204735	19	3.3	18	79	13	68	55	0	0	44	0.99
9204996--9205053	27	2.1	27	81	6	64	50	3	0	46	1.18
9205265--9205313	16	3.0	16	96	3	89	38	0	6	55	1.25
9205798--9205857	28	2.1	28	96	0	111	28	20	8	43	1.80
9206096--9206142	23	2.0	23	83	0	58	51	2	4	42	1.33
9206569--9206599	16	1.9	16	93	0	53	25	3	6	64	1.33
9207513--9207576	19	3.4	19	93	0	110	39	18	6	35	1.76
9207678--9207710	18	1.9	17	88	11	50	39	6	6	48	1.53
9209434--9209462	15	1.9	15	100	0	58	51	34	0	13	1.42
9209603--9209632	15	2.0	15	93	0	51	36	33	13	16	1.88
9209780--9209814	18	1.9	18	88	0	52	37	0	42	20	1.52
9215851--9215894	23	2.0	22	82	13	54	54	0	6	38	1.27
9216317--9216375	27	2.1	27	84	3	82	49	0	6	44	1.29
9216747--9216797	20	2.5	20	75	12	52	43	1	0	54	1.11
9216895--9216960	26	2.4	27	73	12	64	46	0	1	51	1.10
9216913--9216950	17	2.3	16	86	4	58	52	0	0	47	1.00
9216897--9216945	21	2.3	22	79	13	57	48	0	0	51	1.00
9217230--9217276	17	2.7	17	83	3	58	38	2	0	59	1.09
9217318--9217402	25	3.5	24	75	10	68	50	2	1	45	1.22
9217314--9217379	28	2.3	29	82	5	73	51	3	0	45	1.16
9217350--9217430	33	2.4	34	80	13	87	45	0	2	51	1.14
9217889--9218019	22	6.2	20	71	16	79	43	3	0	52	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9217980--9218046	29	2.1	29	86	13	89	41	1	0	56	1.08
9217959--9218052	34	2.6	34	75	21	79	41	1	1	56	1.13
9218017--9218071	22	2.6	21	76	18	60	43	0	1	54	1.10
9218120--9218997	181	4.9	174	77	6	722	40	9	8	41	1.68
9219093--9219140	23	2.1	22	88	3	69	56	2	0	41	1.11
9219105--9219180	37	2.1	38	83	11	97	50	2	0	47	1.15
9219128--9219204	33	2.2	38	80	15	94	49	2	0	48	1.15
9219284--9219324	15	2.6	16	80	7	57	48	0	0	51	1.00
9219447--9219484	15	2.6	15	83	4	51	52	0	0	47	1.00
9220459--9220503	17	2.6	17	80	16	56	44	2	0	53	1.13
9220460--9220499	9	4.4	9	84	9	55	47	2	0	50	1.14
9220456--9220509	18	3.2	18	77	15	53	48	1	0	50	1.11
9221271--9221320	21	2.4	22	83	12	61	48	0	0	52	1.00
9221292--9221327	14	2.6	14	87	12	56	47	0	0	52	1.00
9221634--9221666	14	2.4	14	90	5	50	45	6	0	48	1.27
9221720--9221778	25	2.5	22	77	20	57	42	1	1	54	1.20
9221863--9221909	13	3.5	13	76	21	51	57	6	2	34	1.36
9222320--9222361	22	1.9	22	90	0	66	52	0	0	47	1.00
9222317--9222373	25	2.3	25	81	0	78	49	0	0	50	1.00
9222326--9222386	31	2.0	31	83	6	79	54	0	0	45	1.00
9222315--9222386	28	2.8	26	74	12	76	51	0	0	48	1.00
9222791--9223249	181	2.5	177	81	9	502	40	7	10	41	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9223673--9223702	14	2.1	14	93	0	51	53	0	0	46	1.00
9223695--9223752	24	2.4	22	78	18	62	41	5	0	53	1.23
9223994--9224032	14	2.8	14	85	11	53	43	0	2	53	1.14
9224370--9224669	165	1.8	165	83	2	397	41	7	9	41	1.65
9225274--9226506	181	6.9	179	76	8	938	40	8	10	41	1.69
9225293--9226493	362	3.3	355	78	9	1146	39	8	10	41	1.69
9226532--9227137	182	3.4	181	79	7	648	38	7	9	43	1.66
9227486--9227523	17	2.2	17	86	9	51	47	0	2	50	1.15
9228048--9228081	11	3.2	11	87	8	52	67	0	0	32	0.91
9228127--9228174	14	3.5	14	75	13	55	52	0	0	47	1.00
9228128--9228176	22	2.2	22	78	7	55	51	0	0	48	1.00
9228229--9228257	14	2.0	15	93	6	51	68	3	0	27	1.05
9228527--9228575	13	3.8	13	73	10	55	44	4	2	48	1.33
9228779--9228837	30	2.0	30	86	6	84	54	3	0	42	1.17
9228798--9228841	19	2.3	19	80	7	54	56	4	0	38	1.20
9228925--9228953	14	2.1	14	100	0	58	58	0	0	41	0.98
9229409--9229461	18	3.0	18	75	10	56	49	1	0	49	1.12
9229416--9229465	17	2.9	17	80	13	57	50	2	0	48	1.12
9231435--9232484	181	5.9	179	74	11	667	40	9	8	40	1.69
9232552--9233632	181	6.0	181	77	8	879	42	10	8	39	1.69
9232556--9233656	362	3.1	355	77	7	1036	42	9	8	39	1.68
9234410--9234870	229	2.0	227	81	3	541	42	9	9	38	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9234639--9238094	181	19.4	180	74	8	2287	41	9	8	40	1.68
9236277--9238094	179	10.2	177	75	10	1202	41	9	8	40	1.68
9247395--9247658	145	1.8	145	80	8	322	37	9	13	39	1.76
9247534--9249435	358	5.3	356	76	7	1391	41	9	8	40	1.69
9247540--9249543	181	11.2	180	76	7	1594	41	9	8	40	1.69
9249724--9249764	13	3.2	13	86	6	57	48	0	2	48	1.14
9249704--9249766	21	3.1	20	84	4	65	49	0	3	47	1.17
9249733--9249776	19	2.3	20	84	11	65	47	2	0	50	1.13
9249733--9249797	10	6.5	10	72	18	55	44	1	1	52	1.19
9249800--9251308	181	8.4	177	75	8	1087	40	10	8	40	1.70
9251476--9251508	18	1.9	17	88	11	50	39	6	6	48	1.53
9251871--9251901	16	1.9	16	93	0	53	29	9	6	54	1.57
9252789--9253292	176	2.8	179	77	4	527	41	7	8	42	1.64
9252755--9253285	180	3.0	175	77	6	559	41	7	8	43	1.63
9254264--9254314	9	5.1	10	78	21	54	52	0	0	47	1.00
9254269--9254312	23	2.0	23	95	4	81	54	0	0	45	0.99
9254345--9254383	12	3.4	11	82	10	51	48	2	0	48	1.15
9255318--9255384	19	3.4	19	74	22	57	52	0	1	46	1.09
9255301--9255386	25	3.5	24	75	6	75	52	0	2	45	1.13
9255296--9255370	16	4.6	16	73	16	57	50	0	2	46	1.15
9255367--9255427	21	3.0	21	75	18	56	62	3	1	32	1.21
9255534--9255575	19	2.2	19	86	0	57	52	0	2	45	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9256087--9256416	166	2.0	166	85	4	452	42	11	6	39	1.68
9256462--9257617	181	6.4	180	75	7	827	41	10	8	39	1.69
9256462--9257687	362	3.4	356	76	7	1074	41	10	7	39	1.69
9257837--9257874	20	1.9	20	84	10	51	52	0	0	47	1.00
9257828--9257871	11	3.8	11	80	19	54	52	0	0	47	1.00
9257926--9258017	6	15.8	6	69	20	54	46	3	0	50	1.17
9257932--9258001	22	3.2	21	84	8	86	45	2	0	51	1.16
9257958--9258036	10	7.5	10	71	19	54	45	2	0	51	1.14
9257933--9258022	26	3.6	26	78	19	77	45	3	0	51	1.18
9258051--9258688	182	3.6	176	72	12	435	40	7	9	42	1.66

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121