genome.fa.s79.2.7.7.80.10.50.1000.72.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167904.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_17, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  21107920

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   

This is table  72  of  121  ( 14423 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12424292--12424347	4	13.8	4	81	3	67	71	3	3	21	1.17
12426503--12426536	12	2.8	12	90	0	59	32	5	2	58	1.37
12429552--12429621	35	2.0	36	88	2	106	30	22	1	45	1.61
12430273--12430319	20	2.3	20	85	7	60	42	8	0	48	1.33
12430732--12430799	28	2.3	30	70	14	70	55	0	2	41	1.15
12434145--12434186	20	2.1	20	90	0	66	30	4	11	52	1.59
12437183--12437251	29	2.5	27	79	11	77	79	2	14	2	0.96
12437203--12437248	24	1.9	24	82	8	58	78	4	17	0	0.91
12437548--12437611	18	3.4	19	72	12	53	78	3	7	10	1.07
12438299--12438351	28	1.9	28	81	11	65	62	5	22	9	1.47
12438607--12438645	13	3.0	13	84	0	51	30	20	10	38	1.86
12438756--12439005	48	5.2	48	81	8	285	31	12	17	39	1.86
12438756--12439009	97	2.6	95	82	6	289	31	12	16	39	1.86
12439059--12439117	27	2.4	24	83	13	59	32	6	11	49	1.66
12439086--12439208	37	3.4	37	69	17	98	27	6	18	47	1.73
12439771--12439809	18	2.2	18	90	0	60	28	2	7	61	1.37
12440922--12440974	27	1.9	28	84	3	72	45	3	0	50	1.19
12450912--12450978	34	1.9	36	90	6	111	64	11	4	19	1.44
12463079--12463134	19	3.1	17	78	14	58	30	19	10	39	1.86
12464285--12464387	32	3.2	32	81	2	116	30	22	7	39	1.82
12464307--12464382	33	2.3	32	86	4	107	30	23	6	39	1.80
12464393--12464474	33	2.5	33	78	2	85	21	14	13	50	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12464414--12464482	33	2.1	33	83	0	84	20	14	13	52	1.74
12464547--12464753	43	5.0	43	70	12	144	30	14	12	42	1.83
12471348--12471377	2	15.0	2	100	0	60	50	0	0	50	1.00
12474526--12474964	216	2.0	216	97	0	824	38	13	21	26	1.91
12478099--12478324	62	3.6	63	76	14	187	38	10	9	41	1.72
12478097--12478324	64	3.6	64	77	13	188	39	10	9	40	1.72
12478332--12478399	25	2.7	25	90	0	100	29	4	23	42	1.73
12478381--12478499	63	1.9	63	84	1	159	35	14	9	41	1.78
12478403--12478596	63	3.1	64	79	8	204	37	13	10	37	1.80
12480000--12480039	18	2.3	18	86	4	55	47	0	2	50	1.14
12482613--12482671	31	1.9	30	93	3	100	47	10	0	42	1.37
12484171--12484199	2	14.5	2	100	0	58	48	0	0	51	1.00
12486472--12486510	12	3.2	12	92	0	60	46	2	0	51	1.14
12487722--12487767	20	2.3	20	84	0	56	43	6	2	47	1.41
12487740--12487808	32	2.2	33	79	10	81	53	4	2	39	1.36
12487885--12487940	29	1.9	29	82	7	69	32	14	1	51	1.52
12489234--12489271	20	1.9	20	88	0	58	26	2	0	71	1.00
12496438--12496476	18	2.2	17	86	4	51	12	5	28	53	1.60
12497996--12498035	20	2.0	20	85	9	55	17	10	7	65	1.46
12501100--12501180	44	1.9	41	80	16	94	40	0	3	55	1.17
12501193--12501307	19	6.2	19	71	18	55	35	7	6	50	1.56
12501393--12501441	15	3.1	15	80	13	55	34	0	4	61	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12503931--12503960	6	5.0	6	91	0	51	30	50	3	16	1.62
12507891--12507999	20	5.9	18	69	21	75	26	62	0	10	1.33
12507891--12508006	56	2.1	56	90	6	182	25	62	0	10	1.32
12507925--12508006	20	4.3	20	75	12	100	24	65	0	9	1.22
12510353--12510453	18	5.8	18	69	11	75	30	4	29	34	1.79
12516864--12516915	27	1.9	27	92	0	86	28	5	23	42	1.77
12517454--12517478	2	12.5	2	100	0	50	48	0	0	52	1.00
12517659--12517793	67	2.0	67	82	2	164	25	10	14	49	1.74
12518314--12518494	77	2.4	77	92	0	299	25	4	19	50	1.66
12521631--12521682	27	1.9	27	96	0	95	28	3	23	44	1.71
12522390--12522525	68	2.0	67	88	1	200	25	10	13	50	1.73
12528929--12528975	24	2.0	24	87	8	69	27	14	10	46	1.78
12535185--12535227	21	2.0	21	95	0	77	39	6	13	39	1.72
12537055--12537121	14	4.8	14	70	7	55	53	28	1	16	1.52
12537104--12537162	15	4.1	14	72	20	50	52	28	0	18	1.46
12537220--12537290	8	9.4	8	71	17	62	52	30	0	16	1.45
12537212--12537423	30	7.2	29	74	17	104	52	27	0	19	1.47
12537256--12537298	23	1.9	23	95	4	79	53	25	0	20	1.46
12537250--12537304	22	2.6	20	86	13	83	54	25	0	20	1.44
12537275--12537438	60	2.8	59	81	8	181	50	27	0	21	1.49
12537370--12537441	8	9.8	8	70	22	50	50	30	0	19	1.48
12537280--12537451	58	2.9	59	81	5	186	51	27	0	20	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12537324--12537439	30	4.0	29	82	8	128	50	27	0	21	1.49
12537415--12537490	17	4.6	17	77	9	68	40	34	1	23	1.63
12546189--12546297	37	2.9	37	85	8	159	20	19	11	48	1.80
12546210--12546268	20	3.1	20	65	30	56	20	15	11	52	1.73
12546464--12546525	22	2.8	22	90	0	88	30	20	17	30	1.96
12546460--12546528	22	3.2	22	87	2	86	27	21	15	34	1.94
12546702--12546789	21	4.1	21	73	5	86	34	21	12	31	1.91
12546782--12547031	132	1.9	132	84	3	333	26	20	16	37	1.93
12547122--12547215	37	2.5	37	80	11	102	15	18	13	52	1.75
12549052--12549122	37	1.9	36	82	2	88	59	4	1	35	1.26
12549202--12549268	28	2.4	28	82	0	71	53	31	1	13	1.49
12549229--12549311	15	5.7	15	68	21	61	53	26	0	20	1.46
12549229--12549319	14	6.4	14	71	13	69	52	27	0	19	1.46
12549292--12549340	22	2.2	23	86	13	68	51	32	0	16	1.45
12549368--12549410	15	2.9	15	78	0	50	51	30	0	18	1.47
12549415--12549609	30	6.6	30	78	9	118	48	28	0	22	1.54
12549415--12549578	60	2.8	59	81	4	152	49	27	0	22	1.54
12549415--12549609	58	3.3	60	80	8	161	48	28	0	22	1.54
12549514--12549561	14	3.4	14	75	11	53	52	29	2	16	1.56
12549454--12549609	58	2.6	60	83	5	183	49	28	0	21	1.54
12549643--12549675	15	2.2	15	94	0	57	51	24	3	21	1.62
12551506--12551552	19	2.5	19	83	12	62	0	6	6	87	0.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12552212--12552254	19	2.3	18	84	8	50	30	2	2	65	1.18
12552839--12552872	17	1.9	18	88	5	52	8	14	2	73	1.19
12553090--12553142	27	2.0	27	81	7	63	41	1	3	52	1.30
12553098--12553150	27	2.0	26	85	3	70	41	0	3	54	1.18
12553331--12553366	18	2.0	18	88	0	54	30	2	0	66	1.06
12553605--12553638	13	2.6	13	85	0	50	32	0	0	67	0.91
12554033--12554091	29	2.0	29	83	6	75	47	3	0	49	1.18
12555693--12555737	8	5.2	8	84	10	54	80	2	6	11	0.99
12561383--12561494	59	1.9	59	83	10	149	38	10	20	30	1.87
12561924--12562019	30	3.2	30	95	0	165	29	7	17	45	1.75
12562197--12562242	23	2.0	24	82	4	58	34	17	13	34	1.88
12562212--12562244	16	2.0	17	88	5	50	33	18	12	36	1.88
12562249--12562308	31	1.9	31	83	6	77	45	10	13	31	1.76
12562443--12563216	84	9.1	83	78	11	590	23	12	17	47	1.81
12562443--12563272	43	19.4	44	78	11	641	23	12	16	46	1.81
12562489--12562820	41	8.1	38	76	13	148	23	12	16	46	1.82
12562443--12563191	212	3.5	211	84	5	838	23	12	17	46	1.82
12562443--12563298	44	20.0	44	79	9	638	23	12	17	46	1.82
12589346--12589385	21	1.9	21	89	0	62	35	27	7	30	1.84
12598574--12598619	14	3.4	14	79	11	60	67	0	0	32	0.91
12598608--12598636	13	2.1	14	93	6	51	55	0	0	44	0.99
12605466--12605504	19	2.0	20	90	5	62	58	2	0	38	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12607965--12607993	14	2.1	14	93	6	51	58	6	6	27	1.50
12614676--12614728	21	2.6	21	88	11	83	50	0	0	49	1.00
12614647--12614703	30	1.9	30	82	7	71	47	0	1	50	1.11
12614676--12614727	22	2.5	22	93	6	90	51	0	0	48	1.00
12620262--12620305	19	2.4	19	88	3	63	54	11	2	31	1.48
12626419--12626472	27	1.9	29	85	7	76	37	1	0	61	1.07
12626429--12626474	13	3.9	12	86	13	69	34	0	0	65	0.93
12630921--12630973	22	2.4	22	84	12	65	35	18	1	43	1.62
12631929--12632208	142	2.0	141	83	3	357	34	11	12	42	1.78
12633065--12633096	2	16.0	2	93	0	55	50	3	0	46	1.17

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121