genome.fa.s79.2.7.7.80.10.50.1000.106.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167904.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_17, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  21107920

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   

This is table  106  of  121  ( 14423 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18078170--18078211	11	3.3	12	76	23	50	61	0	0	38	0.96
18078165--18078257	18	5.2	17	74	15	64	54	2	1	41	1.19
18078514--18078538	11	2.3	11	100	0	50	44	0	0	56	0.99
18078515--18078573	29	2.1	29	84	12	79	40	1	0	57	1.09
18078854--18078976	59	2.1	59	95	0	219	38	6	12	43	1.68
18078864--18078954	28	3.1	28	65	25	71	39	5	12	42	1.65
18078880--18078971	28	3.2	28	67	24	82	34	6	15	43	1.72
18080384--18080472	38	2.4	36	76	14	90	58	1	1	39	1.13
18080406--18080455	23	2.2	23	82	13	59	62	2	2	34	1.18
18090452--18090587	52	2.6	52	82	4	159	25	23	8	42	1.81
18090622--18090653	11	2.9	11	95	0	55	46	28	0	25	1.53
18091514--18091649	52	2.6	52	83	4	159	26	25	8	39	1.83
18091546--18091670	52	2.4	52	80	5	137	26	20	9	44	1.82
18091941--18092008	25	2.9	22	77	14	73	25	32	8	33	1.86
18092615--18092761	53	2.8	53	81	2	172	25	22	8	43	1.81
18092786--18092828	22	2.0	22	85	0	59	51	20	0	27	1.48
18093052--18093138	25	3.5	24	76	3	75	24	26	6	42	1.79
18093689--18093814	52	2.4	52	85	2	155	27	24	9	38	1.86
18093700--18093845	52	2.8	52	80	6	145	25	21	9	43	1.83
18093870--18093901	11	2.9	11	95	0	55	46	28	0	25	1.53
18094373--18094415	20	2.4	17	88	11	59	55	13	0	30	1.39
18094796--18094925	60	2.1	61	87	4	183	51	10	10	28	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18094991--18095066	29	2.7	29	87	2	109	51	6	10	31	1.62
18095788--18095838	19	2.7	19	75	0	66	43	13	17	25	1.86
18096186--18096232	8	5.9	8	82	9	60	82	4	0	12	0.80
18101462--18101519	7	8.4	7	81	9	50	84	0	10	5	0.77
18101466--18101521	17	3.4	16	80	7	67	85	0	8	5	0.73
18102799--18102974	21	7.8	21	71	16	113	40	9	13	35	1.78
18102820--18102904	25	3.6	25	70	12	79	47	9	8	35	1.66
18102799--18102971	46	3.8	46	87	3	251	41	9	12	36	1.77
18103440--18103620	41	4.4	40	81	6	195	25	11	19	43	1.84
18103440--18103589	42	3.7	40	85	7	187	26	9	20	44	1.81
18103943--18103985	20	2.0	20	86	13	59	74	18	4	2	1.10
18104771--18104795	7	3.6	7	100	0	50	88	0	0	12	0.53
18105052--18105204	48	3.1	47	76	11	148	52	7	13	27	1.66
18117086--18117111	7	3.7	7	100	0	52	15	26	15	42	1.87
18117815--18117863	25	2.0	25	96	4	91	59	4	8	28	1.45
18117969--18118018	24	2.0	25	96	3	93	58	4	10	28	1.49
18117747--18118034	155	1.9	155	92	4	492	44	12	11	31	1.79
18119414--18119455	4	10.8	4	79	5	50	78	4	0	16	0.91
18119414--18119458	20	2.2	20	88	7	65	77	4	0	17	0.92
18120789--18120877	35	2.6	34	80	5	97	41	6	6	44	1.57
18120888--18120999	31	3.6	31	80	7	145	34	8	14	42	1.75
18121157--18121216	28	2.2	28	85	8	79	38	18	6	36	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18121870--18121973	36	2.9	36	83	10	124	13	17	0	69	1.19
18121881--18121971	7	12.9	7	83	14	100	12	15	0	72	1.12
18127471--18127497	3	9.0	3	100	0	54	66	0	0	33	0.92
18131619--18131662	22	2.0	22	82	8	54	45	13	2	38	1.56
18133068--18133123	12	4.7	12	86	0	67	39	33	25	1	1.66
18133077--18133127	3	17.0	3	95	0	75	39	33	27	0	1.57
18135079--18135104	13	2.0	13	100	0	52	7	15	0	76	0.99
18135936--18135993	26	2.3	24	82	8	71	55	1	5	37	1.33
18135936--18135992	25	2.3	25	84	6	71	54	1	5	38	1.33
18136896--18136943	25	2.0	25	83	4	62	45	0	4	50	1.21
18143341--18143395	10	5.1	11	73	18	53	45	0	1	52	1.11
18151370--18151408	2	19.5	2	94	0	69	51	2	0	46	1.14
18157747--18157780	18	1.9	18	88	5	52	55	2	2	38	1.30
18159035--18159098	29	2.2	30	82	2	85	57	0	3	39	1.14
18184091--18184137	21	2.3	20	86	10	69	53	2	0	44	1.12
18184101--18184142	21	2.0	21	95	0	75	50	0	2	47	1.14
18184829--18184865	17	2.1	17	90	5	56	32	0	0	67	0.91
18184836--18184958	57	2.1	61	81	6	146	51	0	0	47	1.06
18184895--18184949	22	2.4	23	76	8	60	56	1	0	41	1.10
18185984--18186058	37	2.0	37	94	0	132	54	0	2	42	1.14
18186095--18186472	70	5.3	70	80	5	305	41	5	3	48	1.45
18186530--18186564	18	1.9	18	88	11	54	51	0	11	37	1.38
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18187489--18187516	12	2.3	12	100	0	56	92	0	7	0	0.37
18202679--18202712	10	3.4	10	87	0	50	61	2	0	35	1.11
18202923--18202968	19	2.5	19	82	3	58	65	0	2	32	1.05
18202987--18203043	26	2.2	26	81	12	64	61	0	5	33	1.18
18202994--18203044	26	1.9	27	84	11	70	58	0	3	37	1.16
18203083--18203127	17	2.5	19	86	10	60	53	13	0	33	1.40
18203175--18203286	9	12.1	9	69	16	50	58	2	1	36	1.22
18203529--18203567	15	2.3	18	87	12	57	38	5	0	56	1.22
18203605--18203677	11	6.9	11	73	6	53	41	0	5	53	1.24
18203608--18203713	42	2.6	42	81	11	105	38	1	6	52	1.38
18205961--18206038	12	5.9	12	71	21	50	51	0	1	47	1.09
18205952--18206023	28	2.4	29	88	9	110	52	0	1	45	1.09
18206092--18206160	27	2.5	28	75	9	72	49	2	0	47	1.16
18212309--18212349	20	2.0	20	86	9	57	39	14	14	31	1.87
18212620--18212989	42	8.9	42	82	8	400	24	11	18	45	1.82
18212619--18213077	83	5.5	82	82	5	439	24	11	19	44	1.83
18212643--18212975	124	2.7	124	89	3	483	24	11	20	44	1.84
18212645--18213045	41	9.7	39	79	11	225	24	11	19	44	1.84
18212619--18213077	207	2.2	207	84	5	597	24	11	19	44	1.83
18213241--18213266	7	3.7	7	100	0	52	76	0	0	23	0.78
18213573--18213639	31	2.2	31	86	0	89	17	7	19	55	1.66
18216533--18216568	3	12.0	3	100	0	72	33	0	0	66	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18216567--18216618	23	2.3	23	83	6	61	1	17	0	80	0.80
18217162--18217186	9	2.8	9	100	0	50	12	20	56	12	1.67
18217594--18217638	20	2.1	23	88	12	69	66	6	0	26	1.16
18220071--18220109	20	2.0	20	100	0	78	41	15	7	35	1.76
18220158--18220190	15	2.2	15	94	0	57	84	9	0	6	0.76
18224563--18224604	12	3.6	12	78	18	52	73	0	19	7	1.05
18224562--18224604	13	3.5	13	78	18	56	74	0	18	6	1.04
18224562--18224649	23	4.1	22	75	20	80	75	0	13	11	1.06
18224589--18224673	7	10.6	8	75	16	63	74	0	12	12	1.08
18224588--18224662	10	7.8	10	78	14	59	74	0	13	12	1.07
18224535--18224673	31	4.4	30	76	13	104	73	0	13	12	1.10
18224600--18224659	16	3.7	16	80	15	70	75	0	11	13	1.06
18226067--18226125	21	2.7	22	81	5	84	42	3	15	38	1.63
18226454--18226998	41	13.1	41	80	7	539	25	11	19	43	1.84
18226454--18226933	83	5.8	82	86	5	505	25	12	18	43	1.84
18226457--18226933	124	3.8	125	83	7	557	25	12	18	44	1.84
18228055--18228093	16	2.4	16	86	0	60	66	0	5	28	1.12
18231079--18231137	25	2.3	26	78	21	70	40	1	5	52	1.33
18231855--18232277	195	2.2	185	79	10	439	39	4	4	51	1.42
18233063--18233119	16	3.7	16	77	17	59	70	0	0	29	0.88
18233065--18233108	22	2.0	21	91	4	70	75	0	0	25	0.81
18233070--18233133	22	2.9	22	84	11	69	71	0	0	28	0.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18234910--18234938	2	14.5	2	100	0	58	48	0	0	51	1.00
18237127--18237264	63	2.2	63	84	8	176	35	6	10	47	1.65
18237164--18237307	63	2.3	63	78	9	150	38	9	9	42	1.71
18237552--18237630	39	2.0	39	92	4	133	43	5	5	46	1.47
18242656--18242731	28	2.8	28	82	6	75	47	6	1	44	1.37
18244294--18244611	176	1.8	176	79	8	378	38	4	5	51	1.44
18245225--18245263	18	2.3	18	86	8	55	66	0	0	33	0.92
18245235--18245275	14	3.1	14	79	6	50	68	0	0	31	0.90
18252999--18253036	2	19.0	2	94	0	67	47	0	2	50	1.15
18259362--18259390	14	2.0	15	93	6	51	41	0	0	58	0.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121