genome.fa.s79.2.7.7.80.10.50.1000.76.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167904.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_17, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  21107920

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   

This is table  76  of  121  ( 14423 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13046208--13046259	10	4.9	11	75	15	56	71	13	0	15	1.15
13046330--13046431	29	3.5	29	94	2	170	18	51	7	21	1.71
13048918--13049074	52	3.0	53	85	5	205	26	24	7	41	1.81
13049800--13049844	19	2.4	19	100	0	90	24	0	4	71	1.05
13050232--13050275	10	4.3	10	80	5	52	9	2	4	84	0.85
13050570--13050840	32	8.4	33	72	9	141	29	12	18	39	1.88
13050574--13050812	65	3.7	66	78	4	200	30	13	17	38	1.89
13050595--13050771	66	2.7	65	81	1	210	30	12	16	40	1.86
13051038--13051088	22	2.3	22	86	6	68	31	19	13	35	1.91
13056686--13056720	17	2.1	17	89	10	54	2	17	0	80	0.84
13058508--13058548	20	2.1	19	90	4	64	26	4	14	53	1.61
13058884--13058925	17	2.5	17	85	11	59	23	0	2	73	0.94
13061022--13061079	24	2.4	24	82	0	80	27	0	5	67	1.12
13061013--13061121	17	6.7	16	70	18	66	24	2	4	67	1.22
13066837--13066884	18	2.6	18	78	12	53	83	12	2	2	0.83
13072165--13072200	18	2.0	18	94	0	63	33	8	8	50	1.63
13072858--13072940	40	2.0	41	83	9	105	27	10	14	46	1.78
13074677--13074703	12	2.2	12	100	0	54	37	14	14	33	1.88
13078622--13078672	14	3.7	14	78	2	50	39	1	0	58	1.09
13078646--13078711	21	3.0	22	88	6	98	50	3	0	46	1.16
13079647--13079677	3	10.3	3	100	0	62	32	0	0	67	0.91
13085281--13085308	3	9.3	3	100	0	56	32	0	0	67	0.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13085552--13085616	19	3.4	19	78	2	58	29	4	35	30	1.78
13085584--13085627	20	2.3	19	88	4	61	31	0	34	34	1.58
13086177--13086262	17	4.7	18	76	16	63	19	2	6	70	1.21
13086225--13086272	20	2.3	20	86	10	62	22	4	4	68	1.24
13086319--13086363	23	1.9	24	81	4	56	64	4	2	28	1.25
13089695--13089737	17	2.5	17	84	0	59	34	16	20	27	1.94
13091441--13091518	39	1.9	41	89	7	124	50	10	10	29	1.69
13097183--13097239	30	2.0	29	82	6	71	40	7	5	47	1.53
13098365--13098402	12	3.2	12	85	7	51	60	2	0	36	1.11
13098863--13098887	6	4.2	6	100	0	50	16	0	0	84	0.63
13099216--13099254	20	2.0	20	84	0	51	25	5	33	35	1.78
13100061--13100087	3	9.0	3	100	0	54	66	0	0	33	0.92
13101220--13101295	40	1.9	40	84	12	104	67	3	3	25	1.25
13101240--13101301	19	3.2	19	73	22	58	66	4	1	27	1.21
13101652--13101704	14	3.7	14	77	5	61	50	32	0	16	1.46
13101759--13101810	14	3.7	13	75	14	50	51	26	0	21	1.47
13105223--13105263	20	2.0	20	90	0	64	24	31	2	41	1.68
13107623--13107660	15	2.5	15	95	4	67	81	5	10	2	0.94
13108095--13108158	31	2.1	31	90	0	101	81	1	12	4	0.92
13108501--13108534	8	4.0	8	88	11	50	82	0	11	5	0.83
13108492--13108533	17	2.4	17	84	11	50	83	2	7	7	0.89
13109161--13109203	22	2.0	22	85	0	59	34	23	20	20	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13109434--13109683	33	7.5	33	75	2	162	33	18	13	34	1.90
13109757--13109875	33	3.7	32	80	3	130	31	21	15	31	1.94
13110047--13110160	38	2.9	38	82	3	138	28	23	14	32	1.95
13110641--13110725	44	1.9	44	80	4	100	28	21	14	36	1.92
13110513--13110802	155	1.9	154	86	3	413	23	19	15	41	1.90
13110720--13111157	88	4.9	87	79	4	430	22	18	16	42	1.89
13110718--13111173	176	2.6	177	79	6	485	23	17	16	42	1.89
13111150--13111241	21	4.3	23	70	20	67	31	20	17	30	1.96
13111452--13111517	22	3.0	22	78	8	71	30	27	10	31	1.90
13111809--13111842	3	11.3	3	100	0	68	35	0	0	64	0.94
13113792--13113822	16	1.9	16	93	0	53	48	16	9	25	1.76
13115354--13115512	80	2.0	80	91	0	255	36	11	25	26	1.91
13115547--13115914	54	6.8	54	75	4	249	35	14	25	24	1.94
13115563--13115866	161	1.9	161	81	5	373	34	14	26	25	1.94
13115901--13116114	75	2.9	75	82	2	243	36	16	21	24	1.94
13120194--13120266	37	2.0	37	86	5	103	20	4	35	39	1.72
13121193--13121245	21	2.5	21	93	0	88	28	11	15	45	1.80
13123053--13123199	3	51.0	3	75	12	130	34	3	3	58	1.31
13124024--13124064	19	2.2	18	86	4	55	12	4	2	80	0.97
13124037--13124066	13	2.3	13	94	0	51	13	3	3	80	0.97
13124082--13124116	18	1.9	18	94	0	61	20	2	5	71	1.19
13129976--13130119	69	2.1	69	84	2	182	28	16	13	41	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13130838--13130967	3	44.3	3	75	10	117	33	3	3	60	1.28
13131754--13131793	20	2.1	19	90	4	62	17	0	2	80	0.83
13131760--13131803	20	2.2	20	83	0	52	22	2	2	72	1.07
13136788--13136830	18	2.4	18	80	11	52	46	0	2	51	1.13
13136795--13136953	14	9.9	16	68	21	84	48	2	2	46	1.29
13136819--13136951	46	2.8	44	85	12	167	48	3	2	45	1.30
13136868--13136953	31	2.7	31	80	8	77	50	3	1	45	1.26
13136787--13136947	16	10.0	15	67	20	60	47	3	2	46	1.31
13141869--13142099	112	2.0	116	92	3	389	41	13	8	36	1.75
13143894--13143931	18	2.1	18	90	0	58	13	36	15	34	1.87
13144398--13144423	13	2.0	13	100	0	52	7	30	23	38	1.83
13145991--13146104	18	6.5	17	74	18	101	56	1	0	41	1.16
13145999--13146133	15	9.3	15	70	22	92	57	1	1	40	1.17
13146015--13146104	23	3.8	23	72	18	85	55	2	1	41	1.19
13145991--13146119	31	4.5	29	73	21	112	55	1	0	41	1.14
13150005--13150033	15	1.9	15	100	0	58	0	6	0	93	0.36
13150283--13150359	30	2.6	30	83	6	86	54	2	7	35	1.43
13151937--13151964	2	14.0	2	100	0	56	50	0	0	50	1.00
13154113--13154145	11	2.8	12	86	13	50	9	0	9	81	0.87
13154965--13155030	34	1.9	34	90	6	107	36	4	12	46	1.61
13154979--13155070	34	2.7	34	77	9	89	36	2	14	46	1.56
13165232--13165414	95	1.9	95	84	0	240	39	7	10	41	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13165788--13165824	16	2.4	16	82	17	51	32	2	2	62	1.23
13165773--13165822	15	3.5	14	78	13	57	30	2	4	64	1.23
13173421--13173470	2	25.0	2	95	0	64	42	0	8	50	1.32
13181877--13181933	26	2.2	26	93	0	96	22	17	8	50	1.73
13187237--13187276	20	2.1	19	90	4	62	50	2	5	42	1.37
13187259--13187329	23	3.3	22	80	7	74	33	5	8	52	1.55
13187259--13187419	21	7.6	21	71	8	103	34	7	9	47	1.65
13187364--13187454	21	4.3	22	69	9	64	31	5	10	51	1.60
13187698--13187754	22	2.6	22	80	0	60	38	1	8	50	1.44
13187714--13187921	22	9.5	22	70	10	102	39	7	7	45	1.60
13187804--13187921	44	2.7	44	78	10	125	39	9	7	43	1.65
13187966--13188019	22	2.5	22	75	0	63	38	12	7	40	1.72
13188135--13188342	86	2.4	85	77	8	201	39	6	5	48	1.52
13188259--13188313	19	2.7	19	76	18	58	45	5	1	47	1.36
13188636--13188688	22	2.4	22	83	0	61	32	9	11	47	1.71
13188782--13188826	22	2.0	22	82	0	54	35	2	13	48	1.54
13188926--13188987	22	2.9	21	85	4	70	37	8	4	50	1.54
13189134--13189264	22	6.0	22	69	7	97	35	9	7	47	1.64
13189308--13189365	22	2.5	24	83	10	68	37	13	0	48	1.43
13189399--13189459	22	2.8	22	79	16	72	36	3	8	52	1.48
13198519--13198564	23	2.0	23	95	0	83	52	6	13	28	1.65
13200757--13200827	22	3.2	22	77	20	67	9	4	8	77	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13200803--13200886	16	4.9	17	71	16	57	17	1	8	72	1.15
13200793--13200864	37	1.9	37	86	5	101	18	1	8	72	1.17
13201349--13202598	35	34.8	35	68	14	442	42	13	22	20	1.88
13201279--13202639	73	18.9	73	84	3	1643	42	13	22	20	1.88
13201279--13202639	145	9.5	145	84	2	1647	42	13	22	20	1.88
13201279--13202639	218	6.3	218	85	3	1619	42	13	22	20	1.88
13205220--13205346	68	1.9	68	86	0	182	37	6	16	40	1.74
13205509--13205538	15	2.0	15	100	0	60	13	6	20	60	1.55
13205869--13205968	48	2.1	47	83	1	119	46	8	16	30	1.75
13205922--13206052	56	2.4	55	81	1	145	45	12	15	27	1.81

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121