genome.fa.s79.2.7.7.80.10.50.1000.79.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167904.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_17, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  21107920

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   

This is table  79  of  121  ( 14423 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13584937--13584965	14	2.1	14	100	0	58	37	6	0	55	1.27
13591778--13591841	11	5.5	12	74	10	62	71	6	0	21	1.07
13591775--13591853	22	3.5	22	72	16	72	69	6	1	22	1.18
13593028--13593323	39	7.7	38	75	12	228	39	18	15	25	1.91
13592971--13593243	112	2.4	112	87	3	388	38	18	15	27	1.91
13593284--13593356	33	2.2	34	85	7	96	41	19	13	26	1.88
13593460--13593578	40	3.0	41	85	9	156	39	16	15	27	1.90
13598576--13598672	14	6.9	14	76	16	58	25	2	0	72	0.96
13598583--13598672	22	4.0	24	71	25	70	25	2	0	72	0.96
13598596--13598672	8	9.2	8	81	9	75	24	2	0	72	0.97
13598583--13598669	20	4.4	20	73	22	60	25	2	0	72	0.96
13598639--13598672	5	6.8	5	87	12	52	20	0	0	79	0.73
13598569--13598672	19	5.7	18	78	15	83	25	1	0	71	1.03
13599475--13599825	192	1.9	187	83	5	463	47	7	9	36	1.63
13601135--13601235	51	2.0	51	88	0	148	26	17	7	47	1.75
13606978--13607041	6	10.5	6	82	11	60	18	3	1	76	1.00
13607927--13607963	17	2.2	17	95	4	67	83	0	0	16	0.64
13607928--13607964	14	2.7	13	91	8	56	81	0	0	18	0.70
13608133--13608176	8	5.2	8	82	15	54	75	0	2	22	0.92
13608132--13608176	17	2.6	17	82	0	63	75	0	2	22	0.91
13608463--13608489	14	1.9	14	100	0	54	74	0	0	25	0.83
13611856--13611890	16	2.2	16	89	0	52	74	0	22	2	0.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13612258--13612290	14	2.3	15	89	5	50	72	0	24	3	0.98
13612278--13612352	8	8.8	8	70	18	53	77	0	14	8	0.98
13612296--13612366	9	8.7	9	73	17	57	74	1	14	9	1.13
13612259--13612376	16	7.2	17	73	20	76	72	0	18	7	1.13
13612299--13612375	24	3.3	23	78	12	84	76	1	14	7	1.06
13612299--13612375	23	3.3	23	81	15	86	76	1	14	7	1.06
13613423--13613910	21	22.0	22	77	9	368	37	9	13	38	1.78
13613583--13613624	14	3.2	14	74	19	54	42	9	9	38	1.70
13613427--13613910	22	21.7	22	77	9	369	38	9	14	38	1.78
13613423--13613910	46	11.0	44	80	7	304	37	9	13	38	1.78
13613427--13613910	43	10.9	43	80	8	370	38	9	14	38	1.78
13613562--13613869	111	2.8	112	83	5	353	36	8	15	39	1.79
13614137--13614179	22	2.0	22	90	9	70	37	16	13	32	1.88
13614625--13614678	5	10.6	5	82	7	56	20	1	0	77	0.86
13614628--13614677	6	8.5	6	85	10	68	18	2	0	80	0.82
13614876--13614917	14	2.7	15	85	14	59	73	16	7	2	1.15
13615454--13615494	12	3.3	12	86	6	55	14	0	12	73	1.11
13615453--13615496	13	3.5	12	81	9	52	13	0	11	75	1.06
13615514--13615543	8	3.8	8	90	0	51	86	3	0	10	0.67
13616060--13616086	14	1.9	14	100	0	54	74	0	0	25	0.83
13620597--13620632	10	3.5	10	92	7	63	27	2	0	69	1.02
13620591--13620637	14	3.4	14	80	16	53	27	2	2	68	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13620813--13620859	11	4.0	12	78	10	53	29	2	0	68	1.02
13620998--13621026	5	6.0	5	92	8	51	20	0	0	79	0.74
13621046--13621122	23	3.2	23	75	12	66	70	5	1	23	1.15
13621096--13621152	17	3.2	17	80	5	60	73	7	1	17	1.14
13621050--13621157	6	18.3	6	76	12	64	73	5	1	19	1.13
13622785--13622827	16	2.6	17	82	14	54	67	2	0	30	1.03
13623671--13623731	15	4.3	15	76	16	58	67	0	3	29	1.07
13623977--13624010	17	2.1	17	88	5	52	41	2	0	55	1.15
13625163--13625194	2	16.0	2	100	0	64	50	0	0	50	1.00
13626215--13626247	16	2.1	16	88	11	50	45	9	3	42	1.51
13627183--13627237	28	2.0	28	92	0	92	49	9	7	34	1.62
13628461--13628497	2	18.5	2	100	0	74	51	0	48	0	1.00
13629037--13629079	2	21.5	2	100	0	86	51	0	48	0	1.00
13633219--13633269	13	4.2	12	80	9	50	76	1	21	0	0.88
13633232--13633277	13	3.8	12	81	16	51	73	2	23	0	0.94
13635176--13635267	48	1.9	48	84	6	125	35	4	15	44	1.66
13641006--13641068	12	5.1	12	74	14	56	60	1	0	38	1.07
13641009--13641043	16	2.2	16	89	0	52	54	2	0	42	1.15
13643618--13643681	29	2.2	30	91	2	103	35	7	0	56	1.28
13645366--13645391	10	2.6	10	100	0	52	61	0	7	30	1.24
13645577--13645641	28	2.7	22	71	24	58	33	1	0	64	1.03
13645591--13645636	13	3.4	13	77	11	56	34	2	0	63	1.07
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13645586--13645651	28	2.3	28	92	2	105	37	1	1	59	1.16
13646847--13646882	2	18.0	2	94	0	63	52	0	0	47	1.00
13648438--13648805	202	1.8	203	80	6	451	34	14	7	43	1.73
13648946--13648970	13	1.9	13	100	0	50	68	0	0	32	0.90
13649012--13649043	13	2.5	13	94	0	55	6	25	40	28	1.79
13649964--13650004	11	3.8	11	78	18	50	19	0	9	70	1.14
13649960--13650015	21	2.9	20	82	10	64	21	0	8	69	1.15
13650203--13650526	49	6.7	49	78	7	333	35	21	14	28	1.93
13650203--13650526	141	2.3	142	84	5	411	35	21	14	28	1.93
13651270--13651310	9	4.7	9	87	6	66	9	9	0	80	0.91
13651270--13651310	17	2.3	18	91	4	66	9	9	0	80	0.91
13652579--13652620	22	1.9	22	85	9	59	42	14	7	35	1.73
13655970--13655995	3	8.7	3	100	0	52	69	0	0	30	0.89
13657219--13657272	23	2.3	23	84	9	65	5	5	11	77	1.10
13657472--13657501	13	2.3	13	94	0	51	50	16	6	26	1.70
13657538--13657571	14	2.3	15	90	5	52	35	23	14	26	1.94
13657436--13657623	63	3.0	63	88	2	247	35	23	13	27	1.93
13657548--13657808	47	5.3	50	84	9	297	34	25	13	26	1.93
13657548--13657808	99	2.6	95	81	10	299	34	25	13	26	1.93
13657967--13658054	23	4.0	23	68	13	76	31	19	20	28	1.97
13657967--13658043	21	3.6	21	65	16	50	29	19	22	28	1.98
13658117--13658164	23	2.1	23	92	0	78	25	27	22	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13658743--13659285	33	16.5	33	84	3	625	33	15	20	30	1.94
13668181--13668222	6	6.8	6	79	15	50	11	4	2	80	0.95
13669326--13669510	92	2.0	92	92	0	307	38	12	23	25	1.90
13673565--13673609	24	1.9	24	86	13	67	31	2	2	64	1.18
13682566--13682603	14	2.6	15	83	8	51	55	0	0	44	0.99
13683474--13683541	30	2.3	30	82	5	75	36	11	1	50	1.48
13683491--13683580	30	3.0	31	78	6	112	34	11	1	53	1.44
13683497--13683592	30	3.2	29	71	12	86	33	9	3	54	1.48
13684178--13684476	163	1.8	163	93	1	521	39	9	10	41	1.72
13685901--13685952	26	2.0	26	81	7	61	42	0	7	50	1.31
13686230--13686277	20	2.4	21	86	6	64	75	0	8	16	1.04
13687123--13687195	32	2.2	33	78	7	78	49	6	19	24	1.72
13687403--13687471	34	2.1	33	83	8	86	52	13	15	18	1.75
13689344--13689376	17	1.9	17	93	0	57	0	15	0	84	0.61
13692442--13692572	60	2.2	61	79	5	142	42	31	3	22	1.69
13692526--13692586	18	3.4	18	72	17	56	40	37	3	18	1.67
13692522--13692613	35	2.6	35	89	5	132	45	33	2	18	1.62
13692543--13692603	18	3.5	17	74	14	61	47	37	1	13	1.52
13692683--13692711	13	2.1	14	93	6	51	58	34	0	6	1.25
13692683--13692763	32	2.6	31	86	2	108	56	30	2	9	1.45
13692682--13692763	31	2.6	32	84	3	105	56	30	2	10	1.47
13692794--13692850	19	2.9	19	85	14	73	49	31	5	14	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13692916--13692977	19	3.3	19	79	6	63	43	35	1	19	1.61
13694452--13694547	28	3.6	24	69	21	66	51	0	4	44	1.21
13694431--13694545	56	2.1	55	83	12	141	47	0	4	47	1.21
13694502--13694559	27	2.1	27	81	6	64	53	0	5	41	1.23
13695233--13695289	29	2.0	29	82	6	71	42	5	3	49	1.42
13695624--13695746	63	2.0	63	80	6	142	50	7	3	39	1.46
13696588--13696641	14	3.9	14	80	0	54	53	0	0	46	1.00
13702401--13702456	26	2.1	27	93	3	96	32	12	3	51	1.56
13702733--13702901	78	2.2	78	76	2	169	30	26	12	30	1.93
13702780--13702925	78	1.9	78	85	0	202	30	24	10	33	1.90

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121