genome.fa.s79.2.7.7.80.10.50.1000.74.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167904.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_17, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  21107920

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   

This is table  74  of  121  ( 14423 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12793088--12793140	17	3.1	16	84	13	61	77	1	11	9	1.07
12796525--12796581	25	2.3	23	75	16	60	78	3	17	0	0.88
12798882--12798998	17	6.6	17	69	14	67	31	11	8	48	1.69
12798862--12798974	37	3.1	36	75	14	124	30	14	8	46	1.75
12798913--12799010	17	5.6	17	69	7	52	31	8	10	50	1.66
12798852--12799010	72	2.2	72	87	1	230	32	11	10	46	1.73
12799269--12800013	41	18.1	41	72	6	371	28	18	13	40	1.87
12799615--12799715	48	2.1	48	83	0	121	28	18	14	37	1.91
12799574--12799737	89	1.8	89	82	2	213	26	15	15	41	1.88
12799269--12799905	123	5.1	123	74	8	421	27	18	13	40	1.87
12799864--12800016	79	1.9	78	84	7	202	30	17	11	39	1.86
12801638--12801680	3	13.3	3	90	9	59	30	0	2	67	1.03
12801884--12802136	60	4.2	57	77	11	213	43	5	14	35	1.69
12801881--12802136	120	2.1	122	84	4	324	44	5	14	35	1.69
12801884--12802086	58	3.4	59	81	10	225	44	5	12	36	1.66
12805944--12806012	26	2.8	25	77	18	81	73	0	17	8	1.07
12807183--12807239	21	2.6	23	75	13	66	38	7	15	38	1.75
12807373--12807435	26	2.5	26	87	7	85	28	11	11	49	1.72
12807397--12807435	17	2.3	17	86	0	60	28	12	12	46	1.79
12807373--12807435	9	7.4	8	76	15	56	28	11	11	49	1.72
12807337--12807436	43	2.2	45	82	5	114	31	12	10	47	1.74
12807585--12807756	86	2.0	86	84	4	222	20	20	15	43	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12807609--12808073	86	5.4	86	77	4	366	20	17	16	46	1.85
12807743--12808101	171	2.1	171	80	2	398	20	17	16	45	1.85
12808623--12808661	20	2.0	20	90	5	62	30	7	17	43	1.77
12809145--12809187	22	2.0	22	81	9	52	41	2	6	48	1.43
12818191--12818234	19	2.4	18	88	3	61	86	4	9	0	0.70
12819013--12819061	13	3.3	15	80	16	57	71	0	20	8	1.11
12819429--12819707	50	5.5	51	77	10	257	31	10	16	42	1.81
12819834--12819971	46	3.0	48	78	8	151	33	10	17	39	1.83
12820617--12821053	173	2.5	176	80	9	482	33	12	18	35	1.88
12822697--12822763	19	3.6	19	75	4	64	47	25	2	23	1.66
12822678--12822838	38	4.3	37	71	12	103	44	31	4	19	1.72
12822768--12822841	19	3.9	18	82	8	76	40	36	6	16	1.75
12822818--12822897	12	6.4	12	74	11	54	46	33	1	18	1.58
12822834--12822932	18	5.4	18	76	9	83	48	31	0	20	1.50
12822854--12823027	7	28.0	6	69	17	65	47	33	2	17	1.60
12822831--12822924	12	7.7	12	71	13	66	50	29	0	20	1.49
12822935--12823020	31	2.8	31	87	0	118	44	36	3	16	1.65
12823184--12823419	119	2.0	119	98	0	454	31	19	19	30	1.96
12823740--12823925	53	3.5	51	75	10	183	25	17	8	48	1.76
12823934--12824033	50	1.9	53	82	9	127	24	10	9	57	1.60
12823831--12824020	95	2.0	98	86	5	271	24	13	9	52	1.69
12824370--12824414	8	5.8	8	84	5	65	24	0	2	73	0.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12825648--12825860	41	5.1	42	81	8	161	44	21	9	25	1.82
12825679--12825860	41	4.4	41	86	3	249	45	20	9	24	1.80
12826265--12826382	58	2.0	58	86	1	164	30	16	16	36	1.91
12827669--12827727	22	2.7	21	82	7	64	6	11	1	79	0.99
12827641--12827727	10	8.8	9	71	17	57	6	14	1	77	1.04
12827698--12827737	17	2.3	18	91	4	64	5	17	0	77	0.94
12827664--12827735	39	1.9	36	86	8	99	6	13	1	77	1.03
12827676--12827736	20	3.2	19	75	6	61	6	13	1	78	1.01
12828577--12828609	17	1.9	17	100	0	66	60	0	21	18	1.36
12831850--12832071	107	2.1	107	79	3	232	25	13	9	50	1.72
12831883--12832124	54	4.5	54	77	5	222	23	14	9	52	1.70
12831932--12832124	54	3.6	54	79	4	228	22	13	8	54	1.66
12831883--12832116	107	2.2	107	86	3	344	24	14	9	51	1.72
12832681--12832735	22	2.4	22	80	14	58	70	12	0	16	1.16
12835992--12836037	20	2.3	21	85	11	69	32	4	15	47	1.65
12835996--12836043	20	2.6	18	81	15	53	33	4	14	47	1.63
12849714--12849787	37	2.0	37	97	0	139	18	9	13	58	1.62
12851198--12851239	20	2.0	21	86	13	59	61	2	2	33	1.21
12851233--12851268	18	1.9	18	88	5	54	50	0	2	47	1.15
12851204--12851308	10	10.6	10	71	6	79	53	0	2	42	1.22
12852677--12852729	23	2.3	23	90	9	90	35	1	5	56	1.34
12852677--12852766	11	8.0	11	72	17	60	41	3	5	50	1.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12852741--12852770	11	2.6	12	89	10	53	43	0	6	50	1.28
12854711--12854758	22	2.2	22	100	0	96	29	8	33	29	1.86
12856785--12856856	28	2.5	28	84	2	99	48	8	18	25	1.75
12859610--12859706	42	2.3	42	78	0	113	18	29	4	47	1.67
12860740--12860771	9	3.4	10	87	12	50	18	0	0	81	0.70
12862310--12862556	99	2.5	98	84	5	304	40	15	12	31	1.84
12862306--12862559	49	5.2	49	81	4	262	39	15	12	31	1.85
12862733--12863594	99	8.7	99	83	2	910	41	20	14	23	1.89
12862972--12863017	24	2.0	23	86	4	65	43	21	15	19	1.87
12862733--12863594	297	2.9	297	82	1	1021	41	20	14	23	1.89
12863904--12864058	35	4.6	35	77	8	169	37	12	12	37	1.81
12868893--12868941	20	2.5	20	87	12	66	4	6	10	79	1.03
12871247--12871301	10	5.7	10	73	14	53	7	9	5	78	1.10
12871577--12871646	26	2.7	26	80	8	79	20	0	4	75	0.96
12871625--12871867	4	63.8	4	69	11	79	27	4	2	64	1.27
12871580--12871845	7	36.7	7	70	20	110	27	3	2	66	1.22
12871632--12871676	15	2.9	16	90	3	58	26	6	0	66	1.16
12871676--12871811	30	4.6	29	71	22	88	30	4	2	61	1.30
12871626--12871833	22	9.7	22	72	19	122	29	4	2	62	1.28
12871580--12871845	68	4.1	63	73	19	164	27	3	2	66	1.22
12871622--12871847	39	5.8	38	78	12	203	29	4	2	63	1.27
12871782--12871866	17	4.8	17	76	17	66	24	4	2	68	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12871835--12871906	22	3.5	20	74	9	63	22	4	4	69	1.23
12872827--12872861	10	3.3	10	88	11	52	17	5	0	77	0.96
12872891--12873167	58	4.7	59	82	4	328	43	9	13	33	1.76
12872891--12873167	117	2.4	116	84	5	344	43	9	13	33	1.76
12882467--12882805	42	8.1	40	84	7	360	25	15	21	37	1.92
12882467--12882846	42	9.0	41	86	3	356	25	15	21	38	1.92
12883029--12883194	6	26.3	6	72	12	59	26	1	1	70	1.04
12883032--12883330	14	20.5	14	72	21	122	29	3	1	65	1.18
12883104--12883349	36	6.3	41	77	14	204	30	4	1	64	1.20
12883092--12883343	14	18.9	14	72	18	130	30	3	1	64	1.20
12883095--12883394	22	14.1	21	75	16	194	29	4	2	64	1.24
12883036--12883347	4	81.2	4	71	16	118	29	3	1	65	1.18
12883213--12883375	59	2.7	59	82	5	157	29	5	2	62	1.30
12883281--12883406	59	2.1	59	81	5	139	27	6	1	64	1.27
12884351--12884465	58	2.0	56	80	13	126	44	6	13	35	1.69
12884349--12884540	102	1.9	101	86	4	278	43	6	16	33	1.73
12885396--12885459	33	1.9	33	90	0	101	53	18	12	15	1.73
12885595--12885632	18	2.1	18	100	0	76	52	10	15	21	1.72
12886388--12886458	32	2.2	31	80	7	79	39	28	7	25	1.82
12891698--12891776	34	2.2	36	84	10	101	43	8	17	30	1.80
12891914--12892000	7	13.4	7	71	17	55	18	0	40	41	1.50
12891949--12891998	26	1.9	26	87	0	73	16	0	36	48	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12891914--12891999	33	2.7	33	80	10	90	18	0	39	41	1.51
12894358--12894401	4	10.8	4	90	4	70	2	0	20	77	0.88
12894499--12894608	49	2.2	49	84	6	134	48	11	10	29	1.74
12894600--12894808	50	4.3	49	78	5	199	41	11	14	32	1.82
12895300--12895335	13	2.8	13	100	0	72	22	16	0	61	1.35
12895357--12895396	15	2.6	16	84	11	57	17	25	0	57	1.40
12895372--12895433	19	3.5	19	75	16	71	20	19	0	59	1.38
12895385--12895440	30	1.9	29	89	7	87	17	16	0	66	1.26
12903112--12903249	69	2.0	69	100	0	276	39	17	11	31	1.85
12904321--12904823	210	2.4	212	81	4	563	27	8	16	47	1.76

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121