genome.fa.s79.2.7.7.80.10.50.1000.63.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167904.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_17, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  21107920

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   

This is table  63  of  121  ( 14423 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10790959--10791029	36	2.0	36	86	5	99	32	15	16	35	1.91
10792421--10792459	21	1.9	19	90	10	60	71	0	7	20	1.10
10792711--10792742	15	2.1	15	100	0	64	68	6	12	12	1.37
10794991--10795020	15	2.0	15	93	0	51	56	33	0	10	1.32
10794991--10795051	19	3.4	18	78	12	65	50	31	4	13	1.62
10795238--10795272	7	5.0	7	86	13	54	71	2	0	25	1.00
10795238--10795281	21	2.0	23	83	16	58	70	2	2	25	1.10
10812116--10812150	16	2.1	17	94	5	63	57	11	8	22	1.61
10819033--10819068	12	2.8	13	91	8	56	83	0	16	0	0.65
10837670--10837732	30	2.1	29	82	8	74	25	3	28	42	1.70
10858962--10859008	22	2.1	22	92	0	76	61	6	25	6	1.44
10860424--10860462	10	4.0	10	83	6	53	35	2	17	43	1.63
10860424--10860462	19	2.0	20	90	5	62	35	2	17	43	1.63
10869224--10869316	48	1.9	48	84	4	125	16	12	11	59	1.62
10869353--10869395	17	2.5	17	96	0	77	9	6	18	65	1.44
10874833--10874866	17	1.9	18	88	5	52	44	11	5	38	1.65
10879625--10879684	31	1.9	31	93	0	102	36	11	1	50	1.49
10879628--10879822	104	1.9	103	86	3	275	44	11	3	41	1.56
10879743--10880134	150	2.6	151	83	6	492	45	9	5	38	1.61
10884703--10884756	15	3.5	15	87	5	65	62	3	1	31	1.23
10888298--10888351	22	2.5	22	78	6	56	27	16	11	44	1.82
10888710--10888744	16	2.2	16	89	0	52	40	11	14	34	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10894201--10894232	14	2.3	14	94	0	55	34	12	0	53	1.39
10897625--10897750	62	2.0	62	93	0	216	38	15	16	30	1.89
10899907--10900031	5	23.4	5	70	17	74	37	4	4	54	1.38
10899906--10900092	3	66.7	3	75	18	82	39	2	2	55	1.28
10900464--10900523	20	3.0	20	80	9	79	16	1	28	53	1.53
10900957--10900991	6	5.7	6	86	6	52	25	0	2	71	1.00
10900957--10900994	13	3.0	13	88	3	60	28	0	2	68	1.03
10904998--10905061	8	8.9	7	77	17	60	82	4	9	3	0.91
10904999--10905067	21	3.1	21	75	8	57	82	5	8	2	0.92
10904996--10905056	22	2.7	23	80	10	63	78	6	11	3	1.05
10904998--10905061	14	4.4	14	80	16	60	82	4	9	3	0.91
10904998--10905077	37	2.2	37	82	13	94	80	5	12	2	0.98
10905824--10906980	120	9.7	119	77	5	720	20	23	12	43	1.86
10906145--10906329	56	3.2	57	67	13	151	21	24	12	40	1.89
10905824--10906981	240	4.8	239	80	3	1026	20	23	12	43	1.86
10906921--10907047	65	2.0	65	87	3	184	18	25	11	44	1.82
10907022--10907216	88	2.2	88	78	2	212	16	22	16	45	1.85
10907630--10907795	3	58.3	3	74	22	119	33	3	3	59	1.30
10907597--10907773	62	2.9	60	80	11	189	35	4	5	54	1.43
10908878--10908930	19	2.9	19	86	8	74	56	15	0	28	1.39
10908879--10908936	19	3.4	16	74	11	53	58	15	0	25	1.37
10913052--10913111	26	2.3	26	94	0	102	63	10	10	16	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10920017--10920162	63	2.3	64	79	10	149	36	14	10	39	1.80
10920155--10920350	63	3.1	61	81	9	209	34	15	13	36	1.86
10920245--10920380	62	2.2	63	81	9	163	38	13	13	34	1.84
10920308--10920475	88	1.9	88	95	0	300	37	10	15	36	1.82
10920457--10920599	63	2.3	61	78	12	164	29	12	16	41	1.85
10921131--10921297	64	2.7	62	75	4	167	30	10	16	43	1.81
10923749--10923804	19	3.1	18	74	20	62	55	1	5	37	1.33
10924028--10924061	18	1.9	18	88	5	52	20	2	11	64	1.39
10924073--10924187	57	2.0	57	84	3	149	49	8	6	35	1.58
10925195--10925236	3	14.0	3	100	0	84	66	0	0	33	0.92
10925365--10925396	15	2.1	16	94	5	57	68	0	18	12	1.20
10926373--10926433	24	2.4	25	84	13	81	73	1	14	9	1.16
10926391--10926437	12	3.8	12	80	8	51	76	0	14	8	1.01
10926373--10926437	18	3.6	18	82	15	64	75	1	13	9	1.11
10926372--10926441	25	2.9	23	80	14	70	77	1	12	8	1.06
10927180--10927224	16	2.9	15	83	9	54	86	2	8	2	0.73
10927180--10927216	16	2.3	16	90	0	56	86	2	8	2	0.76
10927315--10927355	9	4.7	9	84	3	57	85	0	7	7	0.75
10927315--10927356	18	2.3	18	95	0	75	85	0	7	7	0.73
10927697--10927721	13	1.9	13	100	0	50	92	8	0	0	0.40
10930852--10930887	10	3.6	10	96	0	63	47	22	2	27	1.65
10932767--10932887	25	4.9	25	79	5	129	42	34	1	21	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10932882--10932939	20	3.0	20	79	2	64	46	31	3	18	1.66
10933008--10933040	11	3.0	11	95	0	57	24	39	0	36	1.56
10935536--10935590	16	3.6	16	76	20	55	49	0	0	50	1.00
10935550--10935615	16	3.5	19	68	17	57	50	3	0	46	1.16
10935546--10935605	31	1.9	31	87	12	88	48	3	0	48	1.18
10935549--10935661	19	6.3	19	67	24	59	49	2	0	46	1.21
10935921--10935953	6	5.5	6	92	0	57	78	3	0	18	0.87
10943081--10943128	22	2.1	24	84	7	64	33	10	2	54	1.46
10943364--10943439	34	2.3	34	88	6	111	32	13	19	34	1.90
10949971--10950188	63	3.5	62	70	20	166	33	10	12	43	1.77
10950048--10951381	187	7.1	187	81	4	1381	35	12	11	40	1.78
10950057--10951381	371	3.5	370	86	3	1669	36	12	11	40	1.78
10952123--10952179	28	2.0	28	82	0	69	22	5	24	47	1.72
10952202--10952272	37	1.9	37	97	0	133	23	14	26	35	1.93
10954876--10954946	36	2.0	35	86	2	97	38	18	8	35	1.81
10956806--10956849	17	2.7	16	83	13	54	56	0	2	40	1.11
10956815--10956857	18	2.4	19	81	18	56	62	0	2	34	1.08
10957965--10958011	22	2.2	22	92	3	78	46	0	0	53	1.00
10962235--10962299	32	2.0	33	81	3	78	33	7	7	50	1.59
10962251--10962363	17	6.4	17	75	14	95	30	6	10	52	1.61
10962274--10962363	36	2.4	38	83	3	112	30	5	11	53	1.59
10962286--10962368	19	4.3	20	82	11	84	32	4	9	53	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10962343--10962431	43	2.1	42	87	4	126	35	2	7	53	1.42
10962309--10962481	67	2.7	64	81	11	201	31	2	9	55	1.47
10962325--10962455	24	5.8	24	75	13	109	32	2	9	55	1.44
10962435--10962485	18	2.8	18	80	11	59	27	3	13	54	1.56
10962521--10962572	23	2.2	24	89	3	79	32	3	11	51	1.56
10966105--10966134	12	2.5	12	88	0	51	80	0	20	0	0.72
10966433--10966471	8	4.9	8	81	12	53	87	2	2	7	0.73
10966431--10966505	17	4.4	17	76	14	73	82	1	10	5	0.88
10966434--10966489	15	3.6	14	79	15	58	85	1	7	5	0.79
10966432--10966505	36	2.1	34	82	9	87	83	1	9	5	0.85
10968712--10968814	15	6.9	15	72	11	59	20	0	29	49	1.55
10968899--10968941	15	2.9	14	83	16	52	20	2	34	41	1.65
10968930--10968975	22	2.1	22	83	0	56	28	0	26	45	1.54
10968978--10969014	16	2.4	16	90	4	58	13	5	27	54	1.61
10968993--10969082	23	3.9	23	70	17	69	23	2	24	50	1.61
10969031--10969075	15	2.9	16	80	6	58	17	0	31	51	1.46
10970415--10970449	12	2.9	12	91	0	52	22	2	42	31	1.68
10971015--10971051	13	2.8	14	80	12	51	27	29	5	37	1.79
10971367--10971492	37	3.4	37	74	9	121	28	11	20	39	1.87
10971532--10971651	43	2.8	43	79	2	125	30	11	18	40	1.86
10971971--10972019	22	2.2	23	85	3	64	73	0	12	14	1.10
10972603--10972667	32	2.0	33	90	3	105	29	9	10	50	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10972636--10972758	21	6.1	20	68	24	71	31	4	9	54	1.52
10972612--10972692	16	4.8	17	73	10	76	27	7	12	53	1.65
10972603--10972697	32	2.8	32	81	10	102	29	7	10	52	1.63
10972642--10972769	19	6.3	20	71	19	88	31	3	9	55	1.50
10972678--10972809	42	3.0	43	83	9	153	29	2	11	56	1.46
10972719--10972759	18	2.2	20	86	8	59	29	2	9	58	1.43
10972709--10972781	23	3.2	24	68	18	66	30	1	10	57	1.41
10972831--10972944	45	3.0	35	70	22	102	28	4	14	52	1.60
10972847--10972926	23	3.5	23	93	3	135	28	5	13	52	1.61
10973359--10973405	23	2.0	24	95	4	87	34	8	21	36	1.84

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121