genome.fa.s79.2.7.7.80.10.50.1000.69.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167904.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_17, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  21107920

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   

This is table  69  of  121  ( 14423 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11874555--11874623	27	2.5	27	84	9	95	75	2	13	8	1.15
11874561--11874622	28	2.2	28	91	2	108	75	3	12	8	1.14
11874574--11874621	15	3.3	15	71	11	55	77	2	12	8	1.08
11875635--11875720	35	2.4	35	78	5	93	17	15	13	53	1.73
11875760--11875943	35	5.3	35	75	10	128	14	17	16	51	1.77
11876251--11876356	35	3.0	35	78	0	122	17	17	16	48	1.82
11876258--11876395	70	2.0	70	85	8	192	16	16	18	48	1.81
11876457--11876556	5	19.2	5	71	22	57	78	17	4	1	0.97
11876464--11876554	6	14.7	6	75	17	71	78	16	4	1	0.98
11876455--11876526	22	3.2	22	77	21	69	79	16	2	1	0.93
11876454--11876554	29	3.4	31	73	12	95	78	16	3	0	0.96
11876874--11876940	31	2.2	30	81	10	73	65	1	0	32	1.02
11876908--11876949	15	2.8	16	79	13	54	71	2	0	26	0.98
11878411--11878462	26	2.0	27	88	3	79	65	1	1	30	1.14
11878589--11878647	13	4.8	12	75	21	59	52	27	1	18	1.55
11878658--11878733	14	5.8	14	74	13	63	51	17	6	25	1.69
11878960--11878994	15	2.2	16	90	5	54	80	0	0	20	0.72
11882018--11882332	100	3.2	97	81	5	337	31	13	10	45	1.77
11882018--11882399	48	7.7	48	75	10	268	31	12	10	45	1.77
11882072--11882399	148	2.2	150	80	8	339	31	12	10	45	1.76
11882018--11882334	99	3.2	96	81	6	357	31	13	10	45	1.77
11882378--11882424	24	2.0	24	95	0	85	19	8	14	57	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11882402--11882706	49	6.3	48	79	10	291	30	14	12	42	1.82
11883448--11883511	32	2.0	32	90	0	101	46	6	28	18	1.73
11884844--11884882	11	3.7	10	86	10	51	69	2	2	25	1.14
11885317--11885354	7	5.6	7	90	9	53	78	13	0	7	0.94
11885311--11885359	14	3.5	14	80	5	55	81	10	2	6	0.94
11885917--11886246	143	2.3	142	80	7	341	33	13	12	41	1.81
11887549--11887655	50	2.1	50	84	0	133	23	14	14	47	1.81
11887699--11887934	7	36.8	6	67	20	65	44	34	2	19	1.62
11887699--11887837	13	10.7	13	70	16	83	44	34	1	19	1.60
11887700--11887839	20	7.2	20	73	13	87	43	35	1	19	1.60
11887713--11887938	39	6.0	35	68	16	98	44	34	2	19	1.63
11887901--11887939	19	2.1	19	90	0	60	41	43	0	15	1.46
11889397--11889467	27	2.5	30	77	15	78	69	2	11	16	1.30
11889427--11889469	10	4.3	10	80	11	52	74	2	11	11	1.17
11889800--11889881	33	2.5	32	78	7	92	41	12	15	30	1.84
11889888--11890084	32	6.2	32	74	5	114	43	14	23	18	1.86
11890201--11890312	32	3.5	32	74	6	100	54	9	16	18	1.69
11890176--11890406	99	2.4	97	76	2	230	47	7	22	22	1.76
11895324--11895395	7	11.1	7	75	14	66	47	38	0	13	1.44
11895324--11895397	19	3.9	19	89	5	114	45	40	0	13	1.43
11895304--11895391	38	2.3	38	80	3	97	45	39	0	14	1.45
11895327--11895395	12	5.4	13	76	13	72	46	39	0	14	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11903600--11903647	21	2.3	21	82	3	62	31	20	4	43	1.71
11908391--11908735	50	6.8	50	73	14	242	30	16	13	40	1.86
11908578--11908692	58	2.0	57	89	5	178	33	13	13	39	1.84
11908635--11908735	51	2.0	51	86	0	139	30	14	12	41	1.84
11914133--11914260	6	21.8	6	71	16	54	67	2	7	22	1.29
11914134--11914285	12	13.2	11	72	14	76	68	2	5	23	1.24
11914134--11914224	35	2.6	35	84	10	91	70	1	7	20	1.19
11915198--11915254	26	2.2	26	90	0	87	29	21	15	33	1.94
11918593--11918639	25	2.0	23	87	8	67	42	0	6	51	1.27
11918633--11918675	17	2.5	17	73	0	50	58	0	2	39	1.11
11920002--11920107	51	2.0	52	83	5	133	53	7	15	23	1.67
11920062--11920095	17	1.9	18	88	5	52	70	2	8	17	1.25
11920825--11920928	53	2.0	52	88	5	156	50	8	13	26	1.70
11921936--11921977	3	14.3	3	80	14	52	66	2	0	30	1.04
11922023--11922076	27	2.0	27	86	10	76	25	14	1	57	1.48
11927738--11927854	62	1.9	62	80	3	137	35	11	16	36	1.85
11930653--11931527	161	5.4	161	77	7	734	32	10	15	42	1.80
11931433--11931615	91	2.0	91	91	2	296	31	8	17	42	1.80
11931272--11931776	252	2.0	252	85	3	685	31	8	16	43	1.79
11931524--11931932	161	2.5	161	86	3	554	31	9	15	42	1.80
11933121--11933154	12	2.7	13	86	9	52	64	0	0	35	0.94
11935242--11935305	18	3.6	18	78	2	67	32	6	26	34	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11935242--11935332	39	2.5	36	85	7	112	34	5	29	30	1.80
11939109--11939158	25	2.1	25	85	7	68	44	10	2	44	1.49
11945936--11945961	12	2.2	12	100	0	52	15	0	0	84	0.62
11946187--11946216	3	10.0	3	92	0	51	30	0	3	66	1.07
11946672--11946720	20	2.3	22	89	6	75	30	2	0	67	1.02
11952089--11952116	2	14.0	2	100	0	56	50	0	0	50	1.00
11952341--11952382	3	14.0	3	100	0	84	66	0	0	33	0.92
11955109--11955134	2	13.0	2	100	0	52	50	0	0	50	1.00
11958507--11958538	10	3.0	11	90	9	57	62	0	0	37	0.95
11958679--11958789	31	3.5	31	75	1	114	38	4	8	48	1.53
11958958--11959016	22	2.7	22	89	0	82	10	3	45	40	1.54
11963090--11963500	205	2.0	207	98	0	790	29	17	13	40	1.87
11964523--11964569	3	16.0	3	95	4	87	31	0	0	68	0.90
11964579--11964618	11	3.5	11	86	10	53	0	17	0	82	0.67
11966293--11966412	32	3.5	32	72	13	89	51	0	1	45	1.16
11967937--11967974	17	2.3	16	86	13	51	42	15	2	39	1.61
11971110--11971159	21	2.3	22	82	6	57	48	6	2	44	1.39
11971126--11971166	21	2.0	21	85	0	55	43	7	2	46	1.44
11971304--11971343	19	2.2	18	86	4	53	50	0	0	50	1.00
11971387--11971455	31	2.2	31	84	5	86	42	4	7	46	1.51
11971536--11971569	16	2.0	18	88	11	54	52	5	0	41	1.25
11979573--11979715	63	2.3	62	79	7	164	34	13	12	39	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11979573--11979737	63	2.7	63	79	7	160	35	14	11	38	1.82
11982158--11982187	3	10.0	3	92	0	51	33	3	0	63	1.11
11985396--11985436	20	2.2	19	83	12	50	7	9	7	75	1.18
11985574--11985812	126	1.9	126	83	1	309	38	16	12	32	1.85
11985571--11985838	126	2.1	126	81	2	306	38	16	12	33	1.86
11985865--11986025	40	4.0	40	77	4	135	38	9	13	38	1.77
11986200--11986249	25	2.0	25	100	0	100	40	24	20	16	1.91
11986398--11986458	23	2.7	23	81	0	77	32	19	18	29	1.95
11986421--11986514	44	2.1	44	82	2	107	22	21	29	26	1.99
11986445--11986529	22	3.9	22	80	0	98	20	22	30	27	1.98
11986553--11986767	32	6.7	32	82	2	155	31	13	23	32	1.92
11986559--11986767	64	3.3	64	80	2	240	32	12	22	33	1.91
11986572--11986745	96	1.8	96	84	2	242	32	11	22	33	1.90
11988893--11988935	17	2.5	17	88	7	61	0	4	9	86	0.71
11994059--11994098	3	13.3	3	100	0	80	32	32	0	35	1.58
11994097--11994123	3	9.0	3	100	0	54	33	0	0	66	0.92
11996932--11997017	19	4.5	19	72	15	70	52	33	3	10	1.53
11996932--11997019	38	2.3	37	81	11	99	52	34	3	10	1.52
11997622--11997680	27	2.2	25	77	16	64	38	6	8	45	1.61
11998674--11998706	15	2.1	16	88	5	50	36	3	9	51	1.49
11997542--11999147	537	3.0	525	83	6	1973	36	12	13	37	1.83
12001240--12001319	11	7.3	11	68	20	51	77	2	16	3	1.02
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12004214--12004277	33	1.9	33	83	0	83	32	20	10	35	1.87
12006641--12006927	13	21.9	13	66	20	100	49	29	1	20	1.56
12006641--12006789	20	7.5	20	72	9	72	51	28	0	19	1.52
12006741--12006858	19	6.2	18	74	16	78	52	26	0	20	1.52
12006641--12006908	7	40.8	6	70	16	101	49	29	1	19	1.56
12006857--12006894	19	2.0	20	89	5	60	44	34	2	18	1.64
12011390--12011436	16	2.9	17	75	9	53	2	14	29	53	1.53
12011896--12011971	27	2.9	27	84	5	95	42	1	3	52	1.28
12011903--12011971	24	2.8	24	75	12	68	40	1	2	55	1.24
12011978--12012007	15	1.9	16	93	6	53	36	6	16	40	1.75

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121