genome.fa.s79.2.7.7.80.10.50.1000.40.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167904.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_17, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  21107920

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   

This is table  40  of  121  ( 14423 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7028501--7028581	38	2.2	38	78	8	87	39	4	2	53	1.36
7028718--7028760	18	2.4	18	92	0	68	53	0	0	46	1.00
7028792--7028842	21	2.4	21	87	6	68	54	3	0	41	1.19
7031951--7032032	37	2.2	36	87	6	121	35	2	15	46	1.60
7034179--7034204	9	2.9	9	100	0	52	57	0	0	42	0.98
7039807--7039890	36	2.3	36	88	8	134	44	16	4	34	1.69
7040009--7040045	19	1.9	19	94	0	65	45	24	5	24	1.74
7049081--7049383	113	2.7	111	77	6	284	37	8	6	46	1.62
7049018--7049544	115	4.6	115	75	4	345	36	11	6	45	1.66
7054745--7054798	21	2.6	21	77	16	58	57	0	5	37	1.22
7054753--7054798	21	2.1	22	84	11	60	56	0	4	39	1.19
7054797--7054844	18	2.7	18	86	0	60	52	2	0	45	1.12
7054876--7054925	21	2.4	21	80	6	57	54	4	2	40	1.31
7059198--7059229	3	10.7	3	100	0	64	31	0	0	68	0.90
7059422--7059446	2	12.5	2	100	0	50	48	0	0	52	1.00
7060508--7060914	144	2.9	141	85	6	477	40	10	14	34	1.81
7061404--7061503	49	2.0	49	86	3	139	33	20	17	30	1.95
7061623--7061671	6	8.7	6	97	2	77	0	0	16	83	0.64
7061609--7061671	12	5.7	11	88	5	76	0	1	19	79	0.82
7062654--7062811	60	2.7	60	94	2	266	35	11	22	30	1.90
7062788--7062875	42	2.1	42	82	4	106	28	12	26	32	1.92
7062670--7062966	156	1.9	158	81	5	368	32	10	24	32	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7063040--7063474	68	6.5	68	75	9	302	33	15	17	33	1.91
7063065--7063173	33	3.2	33	69	19	98	30	17	22	30	1.96
7063195--7063259	34	1.9	33	84	9	87	38	15	13	32	1.87
7063235--7063426	34	5.8	33	72	7	122	35	12	15	36	1.85
7063278--7063459	67	2.7	67	79	4	188	34	14	15	35	1.88
7063443--7063877	240	1.8	241	85	4	617	31	16	18	34	1.93
7063694--7063762	36	1.9	36	82	5	86	27	14	20	37	1.91
7063606--7064060	104	4.4	102	73	8	328	31	16	18	33	1.93
7063279--7063910	34	18.4	34	66	13	116	32	15	18	33	1.92
7063676--7064077	207	1.9	207	87	2	583	31	16	17	34	1.92
7067736--7067773	18	2.0	18	90	10	58	21	2	2	73	1.07
7068183--7068210	10	2.8	10	100	0	56	57	32	0	10	1.33
7069039--7069299	144	1.8	144	82	9	345	41	9	13	34	1.78
7069195--7069423	125	1.8	126	85	8	324	37	7	15	38	1.76
7075910--7075934	7	3.6	7	100	0	50	88	0	0	12	0.53
7076005--7076046	17	2.5	17	80	3	50	50	0	4	45	1.23
7076944--7076983	14	2.7	15	84	3	55	80	0	5	15	0.88
7078599--7078690	18	5.0	18	76	14	73	51	13	4	31	1.60
7078867--7078912	24	1.9	24	100	0	92	52	10	6	30	1.62
7078918--7078966	20	2.5	20	96	0	89	57	6	0	36	1.24
7078922--7079038	20	5.5	21	75	10	78	56	8	1	33	1.40
7079018--7079094	31	2.5	30	81	10	75	49	12	9	28	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7079718--7079757	14	2.6	16	88	11	57	72	0	0	27	0.85
7079968--7080043	40	1.9	40	88	0	116	39	26	9	25	1.85
7080077--7080214	43	3.2	42	82	3	159	39	18	15	26	1.91
7084004--7084080	6	12.0	6	72	16	57	25	1	0	72	0.92
7084004--7084080	33	2.4	31	86	6	100	25	1	0	72	0.92
7084045--7084094	19	2.5	21	80	9	68	24	4	0	72	1.02
7084053--7084116	20	2.9	22	75	13	60	28	6	3	62	1.34
7084956--7085059	5	20.4	5	74	16	56	23	1	2	72	1.09
7084966--7084994	3	10.0	3	92	7	51	31	0	0	68	0.89
7084956--7085069	13	8.3	13	70	21	56	21	1	3	72	1.09
7085066--7085301	58	4.1	57	75	12	185	43	5	12	38	1.67
7085093--7085314	58	3.8	59	81	6	256	42	7	13	36	1.72
7091105--7091196	18	5.0	18	76	9	80	52	11	4	31	1.58
7091319--7091417	24	4.0	26	75	22	90	54	10	5	30	1.55
7091392--7091454	25	2.5	25	81	0	72	57	14	1	26	1.47
7091461--7091502	18	2.3	18	78	21	52	47	11	9	30	1.72
7091465--7091502	20	2.0	18	90	10	58	47	10	7	34	1.67
7092078--7092107	12	2.5	12	94	0	51	70	13	0	16	1.18
7092500--7092542	23	1.9	22	90	4	68	60	2	0	37	1.10
7092750--7092793	23	1.9	23	90	0	70	77	0	13	9	0.99
7097448--7097504	6	10.0	6	77	11	66	29	0	5	64	1.15
7097448--7097504	18	3.3	18	83	11	84	29	0	5	64	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7098011--7098052	20	2.1	20	95	0	75	30	4	16	47	1.67
7098412--7098489	18	4.2	18	75	16	70	20	5	0	74	1.01
7098444--7098492	3	16.7	3	80	19	59	26	4	0	69	1.06
7098641--7098683	20	2.2	20	87	4	61	27	6	11	53	1.63
7099406--7099439	11	2.9	11	91	8	50	88	0	8	2	0.62
7107164--7107206	3	14.3	3	83	9	52	37	2	0	60	1.10
7108168--7108201	14	2.5	14	90	4	52	11	5	17	64	1.45
7108306--7108358	27	2.0	27	100	0	106	49	7	5	37	1.55
7112484--7112548	9	6.7	10	81	10	55	66	23	4	6	1.33
7113062--7113138	3	25.7	3	89	0	109	37	2	25	33	1.70
7113440--7113874	115	3.8	116	74	4	360	44	12	21	21	1.85
7113795--7113972	93	1.9	92	86	5	252	43	8	23	23	1.82
7114057--7114188	60	2.2	60	79	6	142	41	10	26	21	1.85
7116018--7116065	11	4.4	11	79	7	53	16	0	4	79	0.89
7116165--7116264	46	2.1	47	82	8	116	54	8	4	34	1.49
7116165--7116264	47	2.2	46	82	8	114	54	8	4	34	1.49
7117667--7117736	34	2.1	34	94	0	122	45	7	12	34	1.70
7117739--7117840	41	2.5	41	85	0	141	47	17	9	25	1.78
7126322--7126380	28	2.1	28	83	3	73	45	1	1	50	1.21
7126301--7126380	29	2.7	29	78	7	81	46	2	2	48	1.29
7127027--7127078	18	2.8	18	79	5	59	53	1	3	40	1.30
7127096--7127187	44	2.1	43	84	9	116	50	3	1	45	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7127443--7127534	46	2.0	48	86	4	134	40	3	6	50	1.45
7127819--7127849	1	31.0	1	100	0	62	100	0	0	0	0.00
7145982--7146007	10	2.6	10	100	0	52	92	0	0	7	0.39
7165927--7165952	12	2.2	12	100	0	52	38	0	0	61	0.96
7166374--7166419	13	3.5	13	78	21	51	67	0	0	32	0.91
7166479--7166513	17	2.1	16	89	5	52	54	8	0	37	1.31
7171635--7171674	20	2.0	20	85	0	53	60	0	2	37	1.11
7172707--7172742	6	6.0	6	90	9	56	80	16	2	0	0.83
7172716--7172741	11	2.4	11	100	0	52	84	15	0	0	0.62
7172709--7172742	17	1.9	18	94	5	61	82	14	2	0	0.79
7176820--7176860	12	3.6	12	80	9	50	31	4	0	63	1.15
7178098--7178139	3	14.0	3	100	0	84	66	0	0	33	0.92
7178382--7178407	12	2.2	12	100	0	52	19	15	7	57	1.62
7184585--7184642	24	2.4	24	88	8	91	62	12	3	22	1.45
7184809--7185142	170	2.0	170	98	1	652	39	9	11	40	1.73
7187713--7187855	72	2.0	73	87	5	209	42	11	15	30	1.83
7188532--7188579	3	16.0	3	100	0	96	66	0	0	33	0.92
7193204--7193272	33	2.1	32	83	2	84	27	11	23	37	1.89
7193210--7193318	34	3.2	34	75	1	103	28	11	22	38	1.88
7197754--7198393	187	3.4	185	82	3	708	35	13	12	38	1.81
7199132--7199180	12	4.0	12	84	5	62	18	8	32	40	1.80
7199157--7199242	37	2.3	37	80	4	93	23	11	25	39	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7200340--7200400	3	21.0	3	79	12	65	32	1	1	63	1.13
7200339--7200402	23	2.8	23	81	11	78	32	1	1	64	1.13
7200341--7200397	29	2.0	29	83	13	73	33	1	1	63	1.15
7200340--7200400	32	1.9	32	86	6	88	32	1	1	63	1.13
7201240--7201269	13	2.3	13	94	0	51	10	3	0	86	0.67
7201259--7201308	11	4.5	11	76	23	52	18	0	10	72	1.12
7201259--7201320	32	2.0	31	90	3	97	17	0	8	74	1.06
7201564--7201592	13	2.1	14	93	6	51	34	10	6	48	1.64
7213774--7213901	40	3.3	39	83	3	168	25	10	21	43	1.83
7213774--7213934	40	4.1	37	78	10	126	25	11	19	42	1.85

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121