genome.fa.s79.2.7.7.80.10.50.1000.89.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167904.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_17, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  21107920

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   

This is table  89  of  121  ( 14423 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15035315--15035358	3	14.3	3	80	4	52	36	6	0	56	1.26
15035642--15035692	24	2.1	24	92	0	84	29	21	25	23	1.99
15035574--15036002	109	3.9	111	78	5	402	38	20	20	20	1.94
15035753--15035796	22	2.0	22	86	0	61	29	18	25	27	1.98
15036665--15036843	33	5.5	33	82	7	204	34	15	21	29	1.93
15036663--15036844	65	2.8	65	82	5	217	35	14	20	29	1.93
15044861--15044925	29	2.3	28	75	2	76	23	1	30	44	1.62
15051294--15051684	50	7.9	49	83	6	357	28	10	21	38	1.88
15051305--15051744	48	8.8	48	80	13	408	27	11	21	39	1.88
15051294--15051684	197	2.0	196	85	7	533	28	10	21	38	1.88
15051621--15051742	58	2.1	59	90	3	192	27	11	23	37	1.89
15060051--15060136	31	2.7	31	85	8	111	32	19	12	34	1.90
15060868--15061260	111	3.5	110	78	8	402	22	20	18	38	1.93
15061015--15061061	22	2.1	22	92	0	76	25	21	21	31	1.98
15060810--15061259	111	4.0	109	78	9	399	23	20	18	38	1.94
15061123--15061173	24	2.1	24	92	7	86	25	23	19	31	1.98
15060810--15061259	220	2.0	223	80	3	505	23	20	18	38	1.94
15061799--15061889	42	2.2	42	84	9	123	50	30	1	17	1.53
15061856--15061968	60	1.9	60	83	0	145	43	30	5	21	1.74
15061968--15062131	85	1.9	85	86	0	229	49	29	3	17	1.64
15061977--15062172	14	13.9	14	68	12	80	50	28	3	18	1.62
15062131--15062214	22	3.8	22	80	4	71	51	27	1	20	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15062140--15062188	7	6.7	7	86	9	71	53	26	0	20	1.46
15062122--15062188	15	4.7	15	82	12	79	50	28	0	20	1.48
15062158--15062229	22	3.3	22	83	11	85	50	29	2	18	1.61
15064422--15064506	4	21.5	4	76	9	77	69	4	0	25	1.08
15064422--15064505	22	3.8	22	78	6	80	70	4	0	25	1.07
15064852--15064900	19	2.5	19	83	3	53	51	12	2	34	1.51
15065003--15065045	9	4.6	9	80	11	50	58	16	0	25	1.38
15065060--15065111	19	2.8	19	74	14	54	50	28	0	21	1.49
15068312--15068344	17	1.9	17	88	11	50	42	0	0	57	0.98
15068672--15068720	25	1.9	26	87	4	73	59	2	6	32	1.34
15072294--15072338	22	2.0	22	86	0	63	28	0	22	48	1.50
15072365--15072519	52	3.0	52	85	1	177	42	8	21	27	1.81
15073084--15073155	25	2.8	25	79	8	83	33	9	34	22	1.87
15073073--15073175	48	2.1	48	82	8	118	34	8	33	22	1.85
15073084--15073175	25	3.8	23	76	13	78	32	8	35	22	1.85
15073444--15073601	52	3.0	52	84	4	194	44	8	20	27	1.79
15074471--15074510	11	3.6	11	79	0	53	20	2	27	50	1.61
15075511--15075552	11	3.8	11	83	0	57	23	0	28	47	1.52
15075510--15075552	22	2.0	22	95	0	77	25	0	27	46	1.53
15075584--15075723	53	2.7	51	77	9	147	47	6	17	28	1.72
15076300--15076368	25	2.8	25	80	6	68	36	7	33	23	1.82
15076619--15076649	11	2.8	11	90	0	53	29	0	19	51	1.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15076607--15076649	22	2.0	22	90	0	68	25	0	23	51	1.49
15076672--15076830	52	3.0	52	82	9	164	43	6	20	29	1.76
15077380--15077460	25	3.2	24	77	6	81	33	7	35	23	1.83
15077694--15077735	22	1.9	22	90	0	66	23	0	28	47	1.52
15077760--15077887	52	2.5	52	90	0	193	48	8	17	25	1.75
15077761--15077917	52	3.0	52	84	1	190	44	7	21	26	1.78
15078492--15078557	25	2.6	25	73	4	62	34	9	36	19	1.84
15078793--15078835	22	2.0	22	95	0	77	25	0	25	48	1.51
15078860--15079014	51	3.0	51	82	2	195	43	9	20	27	1.82
15081538--15081609	23	3.2	22	79	15	76	34	2	1	61	1.19
15085593--15085633	21	1.9	22	85	5	57	53	0	0	46	1.00
15085618--15085658	12	3.2	12	83	12	55	60	0	0	39	0.96
15085616--15085676	12	4.6	14	76	17	51	62	0	0	37	0.96
15086141--15086194	23	2.2	24	83	6	65	42	3	1	51	1.30
15086137--15086189	24	2.3	25	78	15	62	45	3	1	49	1.31
15089908--15089970	32	1.9	32	81	18	76	52	0	1	46	1.10
15091552--15091619	18	3.6	17	75	22	64	57	0	0	42	0.98
15091628--15091692	27	2.4	30	76	23	72	47	3	1	47	1.27
15092328--15092363	18	2.0	18	89	10	56	25	8	0	66	1.19
15093916--15093940	13	1.9	13	100	0	50	64	0	0	36	0.94
15095159--15095187	14	2.0	15	93	6	51	24	0	0	75	0.80
15098421--15098565	52	2.8	52	87	2	202	27	24	8	39	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15098826--15098911	25	3.5	25	77	3	86	22	38	8	31	1.83
15098826--15098928	50	2.1	48	82	7	118	22	36	7	33	1.83
15099449--15099604	52	3.0	52	85	2	208	28	25	7	38	1.83
15100631--15100680	24	2.1	24	84	0	64	44	4	2	50	1.32
15100962--15101059	30	3.3	29	70	5	79	39	17	5	37	1.72
15101025--15101354	115	2.9	115	90	3	529	41	10	10	38	1.73
15103030--15103075	2	23.5	2	88	4	67	54	2	0	43	1.12
15106668--15106730	8	7.9	8	76	18	51	34	1	3	60	1.22
15106640--15106735	11	8.3	11	71	18	52	36	2	4	57	1.30
15106729--15106768	17	2.3	18	86	4	55	5	12	0	82	0.82
15107576--15107622	18	2.6	18	80	9	51	12	2	4	80	0.94
15119883--15119926	13	3.5	13	84	3	54	40	0	6	52	1.28
15120498--15120549	20	2.7	20	84	3	61	42	19	9	28	1.82
15124134--15124420	43	6.7	43	78	4	267	42	14	11	31	1.81
15125433--15125482	9	5.4	9	81	11	57	4	12	0	84	0.76
15125439--15125484	10	4.7	10	79	12	51	4	8	0	86	0.68
15134557--15134586	10	3.1	10	90	9	53	10	6	0	83	0.81
15134554--15134584	9	3.3	9	91	8	53	9	3	0	87	0.66
15134549--15134595	19	2.4	19	78	3	58	14	6	2	76	1.08
15137452--15137478	3	9.0	3	100	0	54	33	0	0	66	0.92
15139016--15139070	23	2.3	24	84	12	69	5	27	0	67	1.12
15139015--15139071	26	2.2	24	79	17	62	5	28	0	66	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15140897--15140930	3	11.3	3	100	0	68	67	0	0	32	0.91
15143914--15143945	15	2.1	15	94	0	55	31	12	18	37	1.88
15148786--15148815	15	2.0	15	93	0	51	30	6	20	43	1.77
15161575--15161880	153	2.0	153	94	0	540	25	13	18	42	1.87
15168612--15168652	21	2.1	18	86	13	55	34	17	0	48	1.47
15171717--15171743	14	1.9	14	100	0	54	59	3	0	37	1.15
15172913--15172961	24	2.0	24	96	0	89	28	24	28	18	1.98
15172987--15173039	2	28.0	2	88	11	85	47	0	0	52	1.00
15173337--15173487	56	2.6	57	77	14	175	43	7	3	45	1.49
15183768--15183802	13	2.8	12	87	12	52	65	2	2	28	1.21
15184067--15184170	52	2.0	51	87	5	147	42	8	23	25	1.82
15184362--15184429	35	1.9	35	81	0	82	19	4	36	39	1.71
15195999--15196037	21	1.9	20	89	5	60	12	7	17	61	1.54
15212922--15212963	21	2.0	22	81	13	52	35	4	11	47	1.61
15214031--15214084	26	2.1	27	83	10	69	31	3	5	59	1.38
15217649--15217710	8	7.8	8	83	7	72	9	9	1	79	1.02
15217649--15217713	25	2.7	24	90	4	96	10	10	1	76	1.08
15217648--15217710	17	3.9	17	83	6	78	9	9	1	79	1.01
15224355--15224866	58	8.7	58	85	5	665	33	13	8	44	1.73
15224355--15224866	117	4.4	118	91	3	820	33	13	8	44	1.73
15224891--15224974	24	3.6	22	76	15	80	78	1	5	14	0.99
15224913--15225043	12	10.4	12	70	18	63	74	4	3	17	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15224899--15224973	11	6.5	11	73	14	55	78	1	6	13	1.00
15224883--15224966	28	3.0	29	81	13	95	76	1	8	14	1.07
15224894--15224972	5	15.4	5	72	23	51	78	1	6	13	1.00
15224879--15224972	17	5.6	16	70	19	52	76	1	7	14	1.05
15224900--15224973	17	4.3	17	75	11	71	78	1	6	13	1.01
15224994--15225043	4	12.8	4	85	4	66	78	4	0	18	0.91
15225852--15225943	22	4.3	20	73	17	71	69	6	5	18	1.30
15226058--15226129	6	12.5	6	78	8	78	79	2	1	16	0.93
15226069--15226129	17	3.6	17	86	4	88	80	3	1	14	0.92
15226014--15226129	11	10.6	10	68	17	54	76	2	2	18	1.01

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121