genome.fa.s79.2.7.7.80.10.50.1000.14.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167904.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_17, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  21107920

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   

This is table  14  of  121  ( 14423 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2334809--2334853	20	2.4	18	79	13	54	31	15	8	44	1.77
2334818--2334859	20	2.1	20	100	0	84	28	11	9	50	1.70
2337073--2337167	47	2.0	46	82	11	113	54	6	14	24	1.63
2337118--2337309	49	3.9	48	76	13	185	51	5	16	27	1.65
2337092--2337309	48	4.5	45	75	16	172	50	5	16	27	1.68
2337284--2337421	37	3.8	36	77	11	120	47	9	17	26	1.78
2337284--2337430	36	4.0	38	76	11	144	46	8	17	26	1.77
2337322--2337467	73	2.0	74	82	9	183	45	8	17	28	1.78
2337362--2337521	35	4.4	37	74	10	100	46	9	13	30	1.75
2337607--2337694	37	2.4	37	84	5	108	54	9	6	29	1.58
2338843--2338879	16	2.4	16	86	8	51	51	2	8	37	1.46
2368934--2368958	2	12.5	2	100	0	50	52	0	0	48	1.00
2370493--2370588	47	2.0	47	95	0	174	31	22	8	37	1.84
2372733--2372793	21	2.9	21	88	9	97	50	0	4	44	1.23
2375663--2375767	30	3.5	28	74	13	84	45	1	9	42	1.47
2375684--2375775	30	3.1	30	76	14	93	46	3	10	39	1.55
2376220--2376251	2	16.0	2	100	0	64	50	0	0	50	1.00
2385384--2385417	2	17.0	2	93	0	59	47	0	0	52	1.00
2385927--2385953	14	1.9	14	100	0	54	85	0	7	7	0.75
2387330--2387384	2	28.0	2	96	3	103	49	0	50	0	1.00
2388478--2388673	98	2.0	98	100	0	392	46	5	11	36	1.62
2388646--2388764	57	2.2	56	90	6	190	50	0	10	38	1.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2388850--2388910	22	2.9	21	70	15	54	47	6	11	34	1.66
2388883--2389005	43	2.9	43	77	9	110	49	4	9	35	1.57
2389055--2389093	11	3.6	10	83	16	51	64	5	0	30	1.15
2389058--2389091	14	2.4	15	90	9	54	64	5	0	29	1.17
2389055--2389145	22	4.1	22	82	2	76	53	4	5	36	1.44
2389155--2389250	30	3.0	33	76	11	92	46	4	6	42	1.48
2389210--2389276	22	3.0	22	78	6	64	49	4	4	41	1.43
2389244--2389320	22	3.5	22	80	0	73	49	12	3	33	1.60
2389635--2389690	22	2.6	22	85	2	78	53	0	7	39	1.28
2389726--2389772	22	2.1	22	88	7	69	48	6	10	34	1.63
2389765--2389790	12	2.2	12	100	0	52	42	0	7	50	1.31
2389780--2389879	22	4.6	21	75	10	76	44	10	12	34	1.75
2389795--2389863	22	3.2	22	80	10	88	44	10	10	34	1.72
2389795--2389878	43	1.9	44	85	2	116	42	10	11	34	1.76
2389934--2390052	22	5.4	22	77	6	96	50	4	8	36	1.52
2389929--2390089	66	2.4	67	79	6	157	49	5	8	36	1.56
2390234--2390320	22	4.0	21	73	10	68	50	5	4	39	1.47
2390244--2390301	11	5.3	11	76	0	53	50	5	3	41	1.42
2390908--2391103	21	9.4	21	68	12	75	46	11	7	34	1.68
2393821--2393877	25	2.2	25	81	9	62	38	7	8	45	1.62
2393937--2393985	4	11.8	4	78	8	53	73	4	0	22	1.00
2393937--2393986	13	3.9	13	75	12	50	74	4	0	22	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2393936--2393983	17	2.8	17	93	0	78	72	4	0	22	1.01
2394417--2394451	13	2.7	13	86	0	52	62	22	0	14	1.31
2394443--2394477	10	3.4	10	88	7	52	62	11	0	25	1.28
2394992--2395282	41	7.0	41	83	2	341	39	20	14	24	1.91
2394994--2395282	83	3.5	82	84	2	346	39	20	14	24	1.91
2395501--2395568	33	2.1	33	85	0	91	33	20	16	29	1.94
2405290--2405354	23	2.8	23	82	13	71	23	9	0	67	1.19
2405592--2405626	17	2.1	17	88	0	52	65	17	17	0	1.27
2405719--2405845	52	2.4	53	88	8	206	23	0	5	70	1.14
2405821--2405856	17	2.0	18	89	10	56	16	2	0	80	0.83
2405917--2406432	52	9.5	56	70	18	308	40	7	13	37	1.73
2405901--2406266	106	3.3	107	75	16	272	41	6	14	37	1.72
2406183--2406377	106	1.8	108	80	10	238	40	7	13	38	1.73
2411922--2412060	41	3.4	40	90	5	199	24	17	20	38	1.93
2411944--2412062	42	2.9	42	97	1	222	24	17	22	35	1.95
2412042--2412080	20	2.0	20	100	0	78	38	15	10	35	1.81
2412000--2412123	61	2.0	62	95	1	223	29	15	19	36	1.92
2412062--2412148	42	2.1	42	91	2	140	27	16	22	33	1.95
2411959--2412148	103	1.8	103	93	0	326	26	16	22	34	1.95
2412437--2412506	19	3.7	19	74	14	56	27	5	0	67	1.13
2412443--2412505	16	3.9	16	77	18	60	28	4	0	66	1.12
2412463--2412527	23	2.9	22	86	9	78	24	7	0	67	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2412946--2413063	12	9.8	12	71	14	64	19	0	4	75	1.02
2412896--2413065	68	2.5	71	86	13	241	21	1	4	72	1.10
2413016--2413053	20	1.9	20	94	0	67	13	2	2	81	0.90
2413081--2413125	16	2.5	19	82	10	60	55	4	0	40	1.20
2413081--2413131	16	2.9	17	82	11	59	50	3	1	43	1.31
2413114--2413507	57	6.8	58	81	8	417	42	8	13	35	1.75
2413134--2413517	177	2.2	172	83	5	475	41	8	14	35	1.76
2415332--2415436	50	2.1	51	85	1	140	49	5	18	26	1.69
2415330--2415433	51	2.2	49	79	10	117	50	5	17	25	1.68
2420529--2420562	6	5.5	6	86	6	50	70	2	0	26	1.01
2420534--2420563	13	2.3	13	94	0	51	73	3	0	23	0.98
2422846--2425056	235	9.5	232	71	11	1058	50	6	11	32	1.62
2422936--2424131	463	2.6	464	79	8	1185	51	5	10	32	1.61
2423782--2423831	23	2.0	24	82	17	59	56	6	2	36	1.36
2426096--2426133	17	2.2	17	100	0	76	31	5	5	57	1.43
2426113--2426224	52	2.2	51	88	6	163	41	7	5	45	1.54
2430705--2430737	17	2.0	16	94	5	57	78	0	12	9	0.95
2431035--2431067	13	2.6	13	85	4	50	78	0	15	6	0.93
2432253--2432356	45	2.3	45	78	1	120	31	6	17	44	1.75
2432552--2432610	17	3.4	17	77	13	66	38	13	6	40	1.71
2432543--2432629	35	2.5	35	81	3	104	41	16	8	34	1.77
2432605--2432871	71	3.8	69	75	6	207	35	13	11	40	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2432920--2433048	69	1.9	69	88	0	195	31	14	13	39	1.86
2432850--2433013	52	3.2	52	87	0	220	31	14	13	40	1.84
2432920--2433048	17	7.5	17	80	6	107	31	14	13	39	1.86
2432920--2433064	69	2.1	69	85	0	191	33	14	13	38	1.86
2433078--2433178	53	1.9	53	82	11	127	34	17	9	37	1.83
2433163--2433255	17	5.4	17	76	5	87	29	9	12	48	1.73
2433575--2433657	18	4.7	18	86	3	96	21	0	12	66	1.24
2433575--2433651	6	13.0	6	79	2	75	23	0	10	66	1.22
2434021--2434047	2	13.5	2	100	0	54	48	0	0	51	1.00
2439299--2439326	2	14.0	2	100	0	56	50	0	50	0	1.00
2439615--2439646	2	16.0	2	93	0	55	46	0	0	53	1.00
2440593--2440646	26	2.1	26	82	3	65	29	3	16	50	1.63
2464928--2464976	2	24.5	2	100	0	98	48	0	0	51	1.00
2465571--2465599	5	5.8	5	100	0	58	20	0	0	79	0.74
2467298--2467322	12	2.1	12	100	0	50	40	0	24	36	1.55
2474651--2474702	26	1.9	28	88	7	81	42	19	7	30	1.79
2475272--2475312	16	2.5	17	80	7	50	51	9	9	29	1.67
2475823--2475860	3	12.7	3	100	0	76	31	0	0	68	0.90
2480830--2480860	2	15.5	2	93	0	53	45	0	3	51	1.17
2481133--2481166	13	2.7	13	86	4	52	55	5	0	38	1.24
2481413--2481451	2	19.5	2	100	0	78	0	48	0	51	1.00
2481451--2481481	2	15.5	2	100	0	62	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2483816--2483858	19	2.2	20	92	8	72	41	2	0	55	1.12
2491562--2491598	19	1.9	19	88	0	56	43	0	0	56	0.99
2491580--2491621	14	3.0	14	89	0	66	45	0	0	54	0.99
2491566--2491621	28	2.0	28	82	6	69	44	0	0	55	0.99
2493945--2494006	20	2.9	22	76	16	67	51	3	1	43	1.27
2496769--2496847	23	3.6	22	71	11	56	60	1	1	36	1.13
2497375--2497464	27	3.1	27	71	21	76	18	10	17	53	1.71
2503751--2503812	28	2.3	27	76	15	65	48	0	3	48	1.17
2503762--2503819	28	2.0	30	80	12	68	50	1	1	46	1.22
2508603--2509122	257	2.0	257	92	0	862	30	12	15	41	1.85

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121