genome.fa.s79.2.7.7.80.10.50.1000.75.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167904.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_17, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  21107920

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   

This is table  75  of  121  ( 14423 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12904321--12904795	106	4.5	104	83	5	508	27	8	16	48	1.75
12907736--12907777	20	2.1	20	90	0	66	35	0	4	59	1.19
12908771--12908881	40	2.8	40	94	0	195	36	21	10	30	1.88
12916137--12916281	43	3.2	46	84	14	189	57	11	6	24	1.56
12916137--12916281	47	3.2	44	87	10	199	57	11	6	24	1.56
12917041--12917077	16	2.3	17	86	9	51	59	5	18	16	1.55
12918426--12918464	19	2.1	19	85	0	51	56	10	7	25	1.59
12918642--12918683	9	4.7	9	79	8	50	0	11	4	83	0.79
12928816--12928871	28	2.0	28	96	0	103	50	19	10	19	1.77
12937374--12937448	30	2.5	30	77	16	84	44	12	1	42	1.50
12942033--12942068	18	2.0	18	100	0	72	33	5	16	44	1.71
12946143--12946178	13	2.8	13	91	0	54	50	0	0	50	1.00
12946249--12946279	16	1.9	16	93	0	53	22	6	6	64	1.40
12946334--12946413	20	4.0	21	75	6	67	55	5	5	35	1.44
12946467--12946524	24	2.5	23	78	10	64	53	3	3	39	1.35
12946585--12946641	17	3.2	17	78	9	51	78	5	3	12	1.03
12946598--12946651	13	4.3	12	84	13	58	81	7	3	7	0.97
12946585--12946649	19	3.5	18	78	14	53	78	6	3	12	1.05
12946600--12946664	27	2.4	27	79	5	69	80	7	6	6	1.04
12947558--12947599	14	2.8	15	85	7	50	69	2	2	26	1.13
12947555--12947627	15	5.1	14	73	18	53	67	1	1	30	1.08
12947596--12947622	6	4.5	6	100	0	54	70	0	0	29	0.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12949393--12949424	2	16.5	2	93	6	57	50	0	0	50	1.00
12950565--12950766	110	1.8	110	96	2	379	42	14	12	30	1.83
12951778--12951880	51	2.0	51	100	0	206	39	21	9	29	1.85
12953308--12953335	2	14.0	2	100	0	56	50	0	0	50	1.00
12954773--12954813	20	2.0	20	85	0	55	60	0	9	29	1.28
12956588--12956924	168	2.0	168	98	0	647	46	21	3	28	1.67
12961444--12961553	27	4.1	27	89	2	168	55	3	13	27	1.55
12961635--12961688	28	1.9	28	88	7	83	46	33	1	18	1.60
12961663--12961701	17	2.4	16	82	4	51	41	38	2	17	1.64
12961895--12961934	21	1.9	21	85	10	55	22	12	10	55	1.67
12965006--12965231	49	4.6	47	81	9	229	38	21	11	28	1.89
12965006--12965231	50	4.5	50	80	6	255	38	21	11	28	1.89
12965360--12965460	48	2.1	48	83	7	125	42	17	12	26	1.86
12965286--12965620	147	2.3	147	83	5	428	41	19	13	25	1.87
12965578--12965640	33	1.9	33	84	12	85	39	19	17	23	1.92
12965533--12965708	81	2.2	81	86	0	244	41	20	14	23	1.89
12965383--12965873	228	2.2	228	86	2	666	41	19	13	24	1.88
12965715--12965949	48	5.6	40	68	24	110	42	20	12	24	1.87
12965735--12965835	48	2.1	48	90	7	161	42	19	13	23	1.87
12965858--12965959	48	2.1	49	85	5	136	43	18	13	24	1.87
12965720--12965971	123	2.0	124	90	3	393	41	20	13	24	1.88
12966400--12966487	35	2.5	35	92	0	149	40	15	9	34	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12972268--12972320	26	2.0	26	85	0	70	35	0	0	64	0.94
12974274--12974377	42	2.5	42	80	1	129	30	14	15	39	1.87
12974360--12974498	62	2.2	61	85	6	181	32	10	18	38	1.86
12974582--12974800	63	3.5	63	78	0	231	36	16	15	31	1.90
12976867--12976970	52	2.0	52	88	0	154	47	7	17	27	1.75
12978641--12978691	23	2.2	22	80	16	59	62	0	5	31	1.19
12980988--12981055	21	3.3	21	80	8	68	83	2	13	0	0.75
12980988--12981056	11	6.5	10	79	15	68	84	2	13	0	0.74
12980991--12981045	24	2.3	24	81	3	67	83	0	16	0	0.64
12983556--12983610	25	2.2	26	90	3	85	40	14	5	40	1.69
12985173--12985203	12	2.6	12	94	0	53	16	0	45	38	1.47
12987046--12987098	19	2.9	19	72	5	56	15	3	5	75	1.13
12987065--12987123	25	2.2	27	85	8	77	16	3	8	71	1.25
12987290--12987369	40	2.0	41	82	2	99	35	17	12	35	1.88
12987497--12987676	41	4.4	41	82	2	173	32	12	20	34	1.90
12988342--12988401	30	2.0	30	83	0	75	33	28	16	21	1.95
12989305--12989385	37	2.2	37	91	4	128	50	7	0	41	1.30
12989373--12989403	16	1.9	16	93	0	53	45	9	3	41	1.53
12989313--12989428	37	2.9	38	82	8	108	45	8	1	43	1.44
12989744--12990008	22	12.0	22	67	12	96	47	7	11	33	1.67
12989695--12989793	51	1.9	51	84	8	130	52	10	7	30	1.61
12990073--12990325	22	11.2	22	70	12	111	47	6	12	33	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12990166--12990226	29	2.1	29	84	6	79	42	6	13	37	1.70
12990201--12990347	22	6.7	22	73	9	75	49	5	10	34	1.60
12990308--12990370	22	2.9	22	82	0	72	47	6	7	38	1.58
12990631--12990687	22	2.6	22	80	0	60	38	10	15	35	1.82
12991073--12991120	22	2.2	22	96	0	87	45	10	8	35	1.68
12991571--12991623	11	4.8	11	76	0	52	54	3	3	37	1.36
12991571--12991761	22	8.7	22	78	4	134	47	4	8	39	1.54
12991583--12991753	66	2.6	66	81	1	191	46	4	9	40	1.55
12991571--12991746	44	4.0	44	79	2	192	47	3	8	39	1.53
13003254--13003310	3	18.7	3	89	3	78	28	1	3	66	1.18
13005403--13005444	13	3.1	14	83	13	52	59	11	9	19	1.59
13005470--13005558	19	4.7	18	75	18	83	51	12	5	30	1.62
13005555--13005604	17	2.9	17	77	19	50	52	8	6	34	1.55
13005742--13005779	18	2.2	18	85	4	51	78	2	7	10	1.04
13006831--13006937	6	17.5	6	75	6	81	63	9	0	26	1.30
13006831--13006917	12	7.2	12	81	6	104	66	9	0	24	1.20
13006834--13006921	6	14.5	6	82	11	90	68	10	0	21	1.19
13006833--13006936	19	5.7	18	77	15	90	64	9	0	25	1.30
13011150--13011192	20	2.1	20	83	12	52	51	0	18	30	1.47
13013864--13013888	10	2.5	10	100	0	50	40	8	20	32	1.81
13014858--13014904	18	2.6	18	75	0	58	25	8	14	51	1.71
13017215--13017245	15	2.1	15	100	0	62	29	6	6	58	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13018245--13018272	12	2.3	12	100	0	56	53	14	7	25	1.66
13018198--13018283	42	2.2	40	83	12	106	55	16	4	23	1.59
13018308--13018340	14	2.3	15	89	5	50	66	9	6	18	1.40
13018374--13018462	19	4.7	19	79	8	92	53	10	6	29	1.60
13018374--13018462	39	2.3	39	84	7	112	53	10	6	29	1.60
13018458--13018509	17	2.9	19	81	18	67	55	9	5	28	1.55
13018598--13018683	13	6.8	13	77	5	70	79	3	4	12	1.02
13018642--13018678	7	5.7	7	87	12	53	86	0	0	13	0.57
13018600--13018677	18	4.2	18	75	9	77	79	3	3	12	1.00
13018643--13018690	18	2.7	18	87	6	53	83	2	4	10	0.87
13019710--13019740	15	2.0	16	93	6	55	6	3	12	77	1.08
13019767--13019801	13	2.6	13	90	4	52	65	0	2	31	1.07
13025367--13025411	4	11.2	4	85	0	63	46	4	0	48	1.22
13025367--13025411	6	7.5	6	87	0	63	46	4	0	48	1.22
13025367--13025411	10	4.5	10	91	0	63	46	4	0	48	1.22
13027772--13027804	17	1.9	17	88	11	50	18	27	6	48	1.71
13028671--13028723	16	3.3	16	81	5	54	50	1	0	47	1.12
13029569--13029615	17	2.5	20	77	16	57	21	0	8	70	1.14
13029737--13029773	3	12.3	3	88	0	56	29	2	2	64	1.21
13030532--13030804	108	2.5	108	87	5	390	8	29	13	48	1.71
13031651--13031806	51	3.0	51	86	1	204	26	24	8	40	1.83
13031651--13031806	52	3.0	52	83	3	199	26	24	8	40	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13032083--13032134	25	2.2	25	82	6	63	30	36	5	26	1.80
13032093--13032142	25	2.0	25	92	0	82	24	34	6	36	1.80
13032141--13032213	25	2.9	25	85	2	92	20	30	6	42	1.78
13032454--13032519	29	2.3	29	84	5	89	19	54	7	18	1.67
13035246--13035272	12	2.2	12	100	0	54	77	14	0	7	0.97
13045768--13045894	49	2.6	49	81	8	134	32	11	18	37	1.88
13045724--13045965	50	4.9	51	80	7	225	31	11	19	38	1.87
13045786--13045965	50	3.6	50	85	5	227	30	11	19	38	1.87
13045723--13046009	50	5.7	50	77	10	207	30	12	18	38	1.88
13046219--13046258	19	2.1	19	90	9	64	70	15	0	15	1.18

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121