genome.fa.s79.2.7.7.80.10.50.1000.21.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167904.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_17, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  21107920

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   

This is table  21  of  121  ( 14423 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3801749--3801787	20	2.0	20	89	0	60	2	30	7	58	1.39
3806169--3806216	19	2.4	21	75	10	55	29	4	4	62	1.32
3806329--3806406	38	2.1	38	92	7	133	35	1	15	47	1.54
3816190--3816240	2	26.5	2	92	7	88	0	52	0	47	1.00
3816393--3816427	2	17.5	2	100	0	70	0	51	0	48	1.00
3818197--3818256	2	31.0	2	86	6	88	51	0	3	45	1.17
3820709--3820741	16	1.9	18	88	11	52	15	6	0	78	0.93
3822321--3822442	60	2.0	60	88	0	181	31	27	10	29	1.90
3824330--3824363	7	4.9	7	100	0	68	44	0	0	55	0.99
3831598--3831639	22	1.9	22	95	0	75	69	0	0	30	0.89
3831979--3832006	13	2.2	13	100	0	56	71	0	0	28	0.86
3834758--3834784	2	13.5	2	100	0	54	0	0	48	51	1.00
3840566--3840590	2	12.5	2	100	0	50	0	0	52	48	1.00
3843833--3844124	127	2.3	125	76	9	277	41	8	5	43	1.60
3844191--3844215	12	2.1	12	100	0	50	40	0	8	52	1.31
3844304--3844354	26	1.9	27	84	4	68	41	15	1	41	1.58
3844272--3844426	58	2.6	59	78	10	156	40	14	2	43	1.59
3852548--3852596	20	2.2	22	82	13	57	63	6	2	28	1.30
3874916--3874988	21	3.3	21	72	20	60	63	2	2	31	1.23
3875833--3875873	20	2.0	21	85	4	57	46	0	0	53	1.00
3876769--3876818	7	7.6	7	76	13	52	70	14	4	12	1.31
3876770--3876818	14	3.7	14	78	15	68	69	14	4	12	1.33
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3876764--3876824	25	2.4	25	91	0	104	70	13	4	11	1.31
3876803--3876886	32	2.6	32	83	5	98	71	10	3	14	1.26
3876786--3876887	11	8.9	11	69	22	50	71	11	2	13	1.25
3876928--3877004	29	2.6	29	78	10	75	20	53	7	18	1.69
3877171--3877224	24	2.2	24	83	6	65	72	12	3	11	1.25
3881940--3883263	666	2.0	659	94	1	2303	38	13	21	27	1.91
3883926--3884739	48	17.0	48	81	8	733	27	12	22	36	1.91
3884958--3885015	7	8.6	7	72	12	50	70	12	3	13	1.28
3884954--3885052	32	2.9	34	76	11	105	73	8	3	15	1.18
3887385--3887421	20	1.9	20	88	5	58	29	0	2	67	1.04
3887791--3887833	17	2.5	17	76	0	50	23	0	4	72	1.04
3887782--3887848	21	3.2	21	79	10	66	22	1	4	71	1.12
3888675--3888718	23	1.9	23	90	0	70	31	15	11	40	1.83
3888849--3888903	16	3.8	15	75	20	55	76	0	18	5	0.97
3888848--3888902	10	5.7	10	81	12	62	76	0	20	3	0.94
3888849--3888902	28	1.9	28	88	7	83	77	0	18	3	0.91
3889118--3889245	49	2.6	49	79	8	134	39	19	11	29	1.87
3897655--3897713	20	3.0	20	94	0	100	18	30	28	22	1.97
3897750--3897783	7	5.1	7	92	7	54	14	0	0	85	0.60
3897753--3897782	6	4.8	6	95	4	51	13	0	0	86	0.57
3898013--3898045	11	2.8	12	86	9	50	18	0	0	81	0.68
3898362--3898432	31	2.3	31	82	4	90	21	22	25	30	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3898502--3898538	19	1.9	19	88	0	56	32	29	16	21	1.95
3898760--3898802	5	8.6	5	80	10	52	20	41	34	2	1.65
3898822--3898848	1	27.0	1	100	0	54	0	0	0	100	0.00
3898822--3898873	9	5.3	10	79	6	54	9	0	3	86	0.69
3898891--3899349	156	2.9	161	94	2	768	28	14	17	39	1.89
3902595--3902620	1	26.0	1	100	0	52	100	0	0	0	0.00
3903010--3903057	21	2.3	21	88	0	69	77	0	18	4	0.93
3904295--3904648	41	8.4	41	80	14	357	24	16	21	37	1.93
3904295--3904478	83	2.2	81	91	2	287	23	17	21	38	1.93
3904497--3904648	40	3.8	40	80	13	188	25	14	20	39	1.90
3904497--3904666	40	4.3	39	78	18	147	25	14	21	37	1.92
3904928--3904986	20	3.0	20	94	0	100	18	30	28	22	1.97
3905024--3905057	7	5.1	7	92	7	54	14	0	0	85	0.60
3905027--3905056	6	4.8	6	95	4	51	13	0	0	86	0.57
3905288--3905320	11	2.8	12	86	9	50	18	0	0	81	0.68
3905637--3905709	31	2.4	31	86	4	103	24	26	21	27	2.00
3905771--3905815	19	2.4	19	88	7	65	24	28	22	24	1.99
3906088--3906120	9	3.7	9	100	0	66	18	0	9	72	1.10
3906079--3906123	18	2.5	18	77	0	63	13	0	6	80	0.91
3906159--3906623	156	2.9	157	93	1	770	29	14	17	38	1.90
3909572--3909618	3	15.7	3	100	0	94	68	0	0	31	0.90
3911881--3911938	1	58.0	1	75	0	53	87	0	3	8	0.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3911881--3911939	9	6.7	9	84	11	86	86	0	3	10	0.68
3911881--3911937	26	2.2	26	90	6	89	87	0	3	8	0.64
3913503--3913544	13	3.4	13	80	12	52	45	2	2	50	1.27
3913674--3913709	18	2.0	18	88	0	54	16	2	0	80	0.83
3914109--3914163	25	2.2	25	87	3	76	5	10	3	80	1.01
3914108--3914170	33	2.0	30	82	14	74	6	12	3	77	1.07
3920710--3920735	3	8.7	3	100	0	52	34	0	0	65	0.93
3921169--3921195	11	2.5	11	100	0	54	51	0	0	48	1.00
3921662--3921725	28	2.2	29	81	13	71	50	0	1	48	1.10
3922549--3922609	27	2.2	28	75	18	74	65	3	1	29	1.18
3924713--3924812	37	2.7	38	77	19	102	46	1	3	50	1.23
3925033--3925072	20	2.0	20	95	0	71	37	20	12	30	1.89
3929708--3929735	13	2.2	13	100	0	56	28	0	0	71	0.86
3929938--3929977	3	13.3	3	100	0	80	67	0	0	32	0.91
3934364--3934401	20	1.9	20	88	0	58	28	10	2	57	1.45
3935243--3935271	2	14.5	2	100	0	58	51	0	0	48	1.00
3936273--3936459	26	7.1	26	65	18	73	62	3	2	32	1.25
3936234--3936364	54	2.4	53	80	9	124	59	5	1	33	1.29
3936298--3936391	38	2.6	34	76	14	89	61	4	3	30	1.31
3936322--3936376	18	2.9	18	75	8	56	65	5	3	25	1.31
3936402--3936435	18	1.9	18	94	5	61	58	0	0	41	0.98
3936627--3936702	29	2.5	31	87	12	113	27	0	6	65	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3936803--3936827	10	2.5	10	100	0	50	24	0	8	68	1.16
3937597--3937752	22	7.2	21	67	15	77	48	7	8	35	1.60
3938851--3938894	23	1.9	23	100	0	88	59	0	0	40	0.98
3939270--3939320	22	2.3	21	86	6	66	41	0	7	50	1.31
3939345--3939425	22	3.7	22	76	0	72	53	2	3	40	1.32
3939470--3939540	22	3.2	22	86	4	63	52	4	5	38	1.45
3939492--3939553	19	3.1	19	81	11	54	50	4	4	40	1.45
3939493--3939541	22	2.2	22	92	0	80	51	4	4	40	1.40
3939631--3939699	22	3.1	22	82	0	84	47	7	4	40	1.51
3939639--3939711	22	3.3	22	79	7	67	46	8	2	42	1.48
3939651--3939868	22	9.9	22	77	4	134	48	7	5	38	1.56
3939664--3939855	66	2.9	65	74	6	165	47	7	6	38	1.56
3939692--3939840	11	13.5	11	65	0	64	48	6	6	38	1.54
3940322--3940585	22	12.1	21	70	12	133	47	4	10	37	1.57
3940322--3940585	44	6.1	43	73	10	162	47	4	10	37	1.57
3940551--3940620	22	3.0	22	71	15	61	44	4	10	41	1.57
3940640--3940720	22	3.7	22	73	12	67	51	8	3	35	1.50
3940870--3940900	13	2.4	13	88	0	53	54	0	0	45	0.99
3941011--3941054	21	2.1	22	83	8	56	52	13	2	31	1.53
3941157--3941197	21	2.0	21	95	0	73	46	0	7	46	1.30
3941663--3941780	49	2.4	49	79	0	137	38	3	10	48	1.54
3947134--3947172	20	2.0	20	89	0	60	28	10	2	58	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3949043--3949232	26	7.2	26	65	18	79	61	3	2	32	1.25
3949004--3949134	54	2.4	53	80	9	124	59	5	1	33	1.29
3949068--3949161	38	2.6	34	76	14	89	61	4	3	30	1.31
3949092--3949146	18	2.9	18	75	8	56	65	5	3	25	1.31
3949173--3949206	18	1.9	18	94	5	61	58	0	0	41	0.98
3949564--3949588	10	2.5	10	100	0	50	24	0	8	68	1.16
3950266--3950362	22	4.6	21	71	15	74	47	10	6	36	1.63
3950283--3950383	43	2.4	44	83	11	131	48	10	6	33	1.65
3950257--3950408	65	2.4	65	80	7	159	46	8	8	36	1.65
3950312--3950414	22	4.8	21	75	4	73	46	8	8	35	1.66

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121