genome.fa.s79.2.7.7.80.10.50.1000.119.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167904.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_17, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  21107920

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   

This is table  119  of  121  ( 14423 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20554187--20554212	2	13.0	2	100	0	52	0	50	0	50	1.00
20562567--20562593	14	1.9	14	100	0	54	51	0	3	44	1.19
20562685--20562748	32	2.0	32	84	6	85	60	7	4	26	1.44
20565128--20565164	2	18.5	2	94	0	65	2	0	45	51	1.15
20573670--20573763	48	2.0	47	87	2	134	40	6	8	44	1.60
20573846--20573890	18	2.5	18	78	7	56	26	0	2	71	0.98
20573937--20573979	20	2.2	20	87	8	61	13	2	4	79	1.00
20574165--20574206	19	2.4	17	84	11	50	30	0	2	66	1.04
20579280--20579341	4	15.5	4	87	0	61	1	38	6	53	1.37
20579280--20579341	10	6.2	10	78	0	61	1	38	6	53	1.37
20581103--20581140	20	2.0	19	85	10	51	34	13	13	39	1.83
20582653--20582683	2	15.5	2	100	0	62	48	0	0	51	1.00
20585911--20585949	3	13.0	3	100	0	78	33	0	0	66	0.92
20588970--20589040	31	2.3	30	81	13	81	47	1	2	47	1.25
20591267--20591296	2	15.0	2	100	0	60	0	50	0	50	1.00
20592804--20592847	22	2.0	22	90	0	70	43	11	11	34	1.77
20596675--20596717	22	2.0	22	95	0	77	44	11	11	32	1.77
20602945--20602984	6	6.7	6	100	0	80	0	32	15	52	1.43
20621438--20621465	2	14.0	2	100	0	56	50	0	50	0	1.00
20622844--20622929	31	2.6	34	85	9	106	38	6	27	26	1.82
20627365--20627481	62	1.9	61	92	1	198	54	9	17	18	1.69
20642281--20642307	3	9.0	3	100	0	54	33	0	33	33	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20647133--20647169	2	18.5	2	100	0	74	48	0	51	0	1.00
20648412--20648491	42	1.9	42	84	0	106	15	38	15	31	1.88
20651438--20651534	29	3.3	29	78	15	83	52	3	7	37	1.45
20651500--20651559	29	2.0	29	83	3	75	56	5	3	35	1.37
20662568--20662602	3	11.7	3	100	0	70	34	0	0	65	0.93
20670606--20670671	31	2.2	30	89	8	98	50	0	0	50	1.00
20670874--20670908	18	1.9	18	94	0	61	42	0	14	42	1.45
20673925--20673961	15	2.3	17	86	9	51	48	10	10	29	1.72
20676739--20676773	17	2.0	18	88	5	54	40	5	2	51	1.40
20677489--20677533	19	2.5	17	79	10	54	48	2	0	48	1.13
20685781--20685814	7	5.0	7	89	3	52	0	38	14	47	1.45
20688041--20688073	17	2.0	17	94	5	59	48	3	12	36	1.56
20698559--20698612	20	2.9	19	79	20	69	48	0	0	51	1.00
20698559--20698604	18	2.5	19	80	20	62	45	0	0	54	0.99
20698559--20698613	18	3.1	19	72	27	57	49	0	0	50	1.00
20699567--20699605	17	2.4	16	87	8	60	23	5	0	71	1.05
20720549--20720584	2	18.0	2	100	0	72	50	0	50	0	1.00
20726730--20726758	6	4.8	6	100	0	58	17	0	34	48	1.47
20732025--20732074	21	2.4	21	100	0	100	30	14	30	26	1.94
20732810--20732853	22	2.0	22	100	0	88	45	13	9	31	1.75
20736501--20736562	25	2.6	25	89	5	92	37	19	29	14	1.91
20736710--20736753	22	2.0	22	95	0	79	43	13	11	31	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20749635--20749678	22	2.0	22	100	0	88	45	13	9	31	1.75
20753332--20753393	25	2.6	25	89	5	92	37	19	29	14	1.91
20753541--20753584	22	2.0	22	95	0	79	43	13	11	31	1.80
20756765--20756797	8	4.2	8	88	7	50	0	3	6	90	0.52
20756765--20756797	15	2.2	15	94	0	57	0	3	6	90	0.52
20763888--20763919	2	16.0	2	100	0	64	50	0	0	50	1.00
20766913--20766978	33	2.1	31	88	5	96	39	3	15	42	1.62
20766926--20766996	33	2.2	33	84	0	88	39	7	14	39	1.73
20767649--20767699	21	2.5	21	83	3	68	19	17	11	50	1.76
20768414--20769353	161	5.9	161	82	2	983	42	15	9	32	1.79
20770515--20770557	13	3.3	13	86	0	59	60	4	6	27	1.43
20775653--20775872	62	3.5	61	75	10	176	35	11	10	42	1.76
20775690--20775879	62	3.1	61	75	9	181	34	12	10	42	1.77
20779961--20780032	35	2.1	35	84	5	92	36	18	8	37	1.81
20780064--20780231	62	2.7	62	80	4	169	35	11	14	37	1.84
20780129--20780324	64	3.1	63	82	8	211	35	13	11	39	1.81
20780214--20780403	64	3.0	62	79	9	170	35	13	8	42	1.75
20780370--20780427	26	2.3	25	85	8	73	34	3	10	51	1.53
20780459--20780625	89	1.9	89	86	7	243	37	9	17	35	1.83
20780753--20780893	61	2.3	59	82	7	156	35	14	9	39	1.80
20780762--20780983	63	3.6	63	79	10	174	33	13	11	40	1.81
20780790--20780983	61	3.2	59	80	11	160	34	12	12	40	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20780868--20781056	63	3.1	58	77	15	184	33	14	10	41	1.80
20781113--20781158	19	2.4	19	100	0	92	23	10	15	50	1.75
20786295--20786342	25	1.9	25	82	0	60	54	12	0	33	1.38
20787708--20787738	13	2.4	13	94	0	53	80	0	0	19	0.71
20787844--20787919	32	2.4	32	100	0	152	46	2	0	51	1.15
20789815--20789915	53	2.0	50	92	5	166	18	31	8	40	1.82
20792231--20792330	50	2.0	50	98	0	191	35	10	29	26	1.89
20796416--20796441	2	13.0	2	100	0	52	50	0	0	50	1.00
20804428--20804487	30	2.0	30	83	6	77	30	10	35	25	1.88
20804599--20804880	142	2.0	143	87	2	415	24	10	31	32	1.90
20804765--20804856	47	2.0	47	84	2	123	27	7	31	33	1.85
20805135--20805220	34	2.5	34	83	5	120	24	12	29	33	1.92
20805016--20805355	154	2.2	153	83	2	430	28	11	25	35	1.90
20806806--20806839	17	1.9	17	88	5	50	35	0	0	64	0.94
20814223--20814276	21	2.6	21	96	0	99	22	9	40	27	1.84
20815737--20815882	72	2.0	74	93	2	251	31	20	6	41	1.79
20825534--20825561	14	2.0	14	100	0	56	21	28	21	28	1.99
20839711--20839757	10	4.4	11	76	13	53	10	4	0	85	0.74
20839952--20839995	17	2.5	18	88	3	63	75	0	0	25	0.81
20841210--20841240	15	2.1	14	94	5	53	51	0	0	48	1.00
20841303--20841368	31	2.2	29	83	5	78	46	0	9	43	1.35
20841348--20841401	27	2.0	26	86	13	74	33	0	3	62	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20842074--20842101	2	14.0	2	100	0	56	50	0	0	50	1.00
20851104--20851164	15	3.7	16	68	14	52	62	1	0	36	1.05
20852417--20852445	2	14.5	2	100	0	58	51	0	0	48	1.00
20852779--20852803	13	1.9	13	100	0	50	48	0	0	52	1.00
20858869--20858910	23	1.9	23	85	9	61	35	19	4	40	1.72
20858988--20859030	10	4.3	10	93	0	50	51	9	0	39	1.34
20858984--20859028	14	3.2	14	90	0	63	51	11	0	37	1.38
20858982--20859018	18	2.1	18	89	0	56	51	16	0	32	1.45
20858996--20859037	2	21.0	2	90	0	66	50	4	0	45	1.23
20863282--20863453	86	2.0	86	80	6	197	32	19	20	26	1.97
20867642--20867688	16	2.8	18	81	15	64	57	0	0	42	0.98
20867597--20867666	28	2.5	27	75	13	70	57	0	0	42	0.99
20867642--20867681	17	2.4	16	88	12	55	57	0	0	42	0.98
20868342--20868372	3	10.3	3	92	0	53	29	0	3	67	1.06
20869014--20869153	71	2.0	70	87	6	203	40	2	5	51	1.38
20869140--20869187	18	2.7	18	87	3	62	56	0	0	43	0.99
20869943--20870026	42	2.0	42	88	4	125	8	28	21	41	1.82
20873145--20873182	19	2.0	19	90	10	60	78	0	10	10	0.95
20873311--20873340	15	2.0	15	93	0	51	63	0	0	36	0.95
20876723--20876798	39	1.9	39	100	0	152	32	22	15	28	1.95
20879272--20879315	10	4.5	10	81	13	56	86	2	9	2	0.75
20879685--20879760	11	6.6	11	81	18	93	86	0	6	6	0.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20879684--20879751	1	68.0	1	80	0	64	88	0	5	5	0.64
20879683--20879766	9	9.4	9	79	18	63	84	0	9	5	0.77
20880365--20880430	32	2.1	32	97	0	123	51	3	16	28	1.59
20880947--20881023	21	3.5	21	73	13	73	42	7	11	37	1.70
20880945--20881034	46	2.0	46	88	4	137	42	8	11	37	1.72
20881199--20881259	31	2.0	31	90	0	95	36	8	14	40	1.76
20881195--20881269	31	2.4	30	84	4	87	38	6	16	38	1.74
20881432--20881829	44	9.3	44	76	8	288	24	11	17	46	1.81
20881441--20881829	88	4.6	86	78	8	341	24	11	18	45	1.82
20881568--20881802	41	5.7	41	78	8	233	25	10	18	45	1.81

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121