genome.fa.s79.2.7.7.80.10.50.1000.23.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167904.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_17, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  21107920

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   

This is table  23  of  121  ( 14423 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4075649--4075728	11	7.2	11	79	13	76	77	1	3	17	0.98
4076723--4076773	25	2.0	25	85	7	68	58	1	0	39	1.09
4076722--4076843	14	8.4	14	71	20	67	61	2	2	33	1.22
4077063--4077134	1	72.0	1	74	0	63	2	0	9	87	0.64
4077063--4077134	8	8.5	8	82	14	83	2	0	9	87	0.64
4077063--4077134	17	4.1	18	80	10	87	2	0	9	87	0.64
4077065--4077134	25	2.7	25	83	12	88	2	0	10	87	0.65
4077063--4077134	35	2.1	35	92	5	119	2	0	9	87	0.64
4077142--4077423	41	7.0	41	86	9	368	38	21	18	21	1.93
4078662--4078706	23	2.0	24	82	8	58	2	26	0	71	0.98
4082551--4082710	61	2.7	58	92	3	248	35	12	5	46	1.65
4082551--4082728	61	3.0	61	84	9	233	33	11	6	48	1.64
4082736--4082820	6	13.7	6	73	19	68	77	1	4	16	0.99
4082736--4082819	32	2.6	33	81	11	102	77	1	4	16	1.00
4082736--4082819	11	7.8	11	74	12	68	77	1	4	16	1.00
4082756--4082861	10	9.5	11	72	19	53	72	2	3	20	1.13
4083852--4083902	25	2.0	25	85	7	68	58	1	0	39	1.09
4083851--4083972	14	8.4	14	71	20	67	61	2	2	33	1.22
4088304--4088453	36	4.0	35	74	14	122	16	18	13	51	1.76
4088304--4088519	75	2.9	75	82	6	244	18	19	11	50	1.77
4088298--4088430	39	3.5	38	78	10	146	17	19	14	48	1.80
4088620--4088695	34	2.2	34	85	0	98	19	21	7	51	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4088798--4088866	34	2.0	34	88	0	102	17	18	13	50	1.77
4088641--4089381	171	4.3	171	83	3	898	20	18	12	47	1.81
4089752--4089800	3	17.0	3	76	16	50	63	0	0	36	0.95
4089752--4089800	11	4.2	12	78	14	50	63	0	0	36	0.95
4089752--4089804	17	3.4	16	84	7	56	64	0	0	35	0.94
4098943--4098995	27	2.0	27	88	3	81	26	3	11	58	1.49
4101212--4101251	20	2.1	19	86	9	55	12	15	25	47	1.80
4107523--4108160	210	3.0	210	83	8	871	34	6	7	51	1.56
4109984--4110012	11	2.7	11	94	5	51	48	6	0	44	1.29
4113036--4113119	18	4.5	19	71	15	68	47	0	2	50	1.14
4113190--4113245	23	2.4	23	76	5	60	58	10	0	30	1.32
4115019--4115045	2	13.5	2	100	0	54	51	0	0	48	1.00
4116150--4116220	29	2.5	28	86	6	90	56	0	1	42	1.08
4121466--4121515	3	16.7	3	100	0	100	34	0	0	66	0.92
4122334--4122383	3	16.7	3	83	8	66	30	0	4	66	1.10
4122410--4122470	22	2.9	22	79	11	65	77	1	1	19	0.95
4122410--4122469	31	1.9	31	86	6	86	76	1	1	20	0.96
4122935--4122988	15	3.3	15	72	18	54	46	7	11	35	1.67
4122941--4123001	19	3.4	19	73	17	76	47	4	13	34	1.64
4122931--4123011	34	2.4	34	95	2	146	45	6	11	37	1.65
4131230--4131631	39	10.3	38	81	4	347	25	9	21	43	1.82
4131230--4131631	79	5.1	76	83	3	426	25	9	21	43	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4131230--4131631	118	3.4	116	79	5	432	25	9	21	43	1.82
4133685--4133714	3	10.0	3	100	0	60	66	0	0	33	0.92
4135925--4135967	23	1.9	22	90	4	68	58	0	0	41	0.98
4135925--4135970	24	2.0	22	87	8	65	58	0	0	41	0.98
4136985--4137061	35	2.2	33	88	6	109	55	1	1	41	1.16
4137038--4137091	22	2.7	21	81	18	62	61	1	0	37	1.07
4141602--4141647	5	9.0	5	81	13	58	0	2	15	82	0.76
4141580--4141644	16	3.9	16	80	11	69	1	4	13	80	0.95
4141602--4141647	20	2.2	21	88	3	67	0	2	15	82	0.76
4141584--4141647	13	5.2	12	71	25	53	1	3	15	79	0.93
4141813--4143362	49	31.7	49	83	8	1883	32	25	11	30	1.91
4141817--4143362	344	4.5	345	95	2	2638	32	25	11	30	1.91
4156565--4156605	17	2.6	15	82	14	55	2	4	7	85	0.81
4156570--4156610	17	2.4	17	91	4	64	2	4	7	85	0.81
4156565--4156610	22	2.1	21	84	4	56	2	4	8	84	0.83
4158368--4158415	20	2.4	21	86	10	66	77	12	2	8	1.08
4159513--4159575	29	2.1	30	91	2	101	65	3	0	31	1.09
4160237--4160285	19	2.7	18	78	12	55	44	0	8	46	1.33
4169917--4169986	35	2.0	35	97	0	131	31	10	11	47	1.73
4171775--4171896	51	2.4	50	77	6	111	30	11	18	39	1.86
4172462--4172521	6	9.7	6	85	7	84	18	5	0	76	0.96
4173735--4173768	8	4.1	8	88	3	50	11	2	2	82	0.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4173907--4173952	14	3.2	15	79	14	53	76	0	2	21	0.90
4174225--4174295	30	2.4	30	83	6	83	60	2	1	35	1.20
4176397--4176428	8	4.0	8	95	0	55	15	0	0	84	0.63
4176556--4176617	21	3.0	20	72	9	52	66	3	0	30	1.08
4177608--4177687	9	9.0	8	70	18	52	17	2	5	75	1.10
4177621--4177681	26	2.4	26	89	8	90	18	0	6	75	1.01
4177608--4177697	17	5.2	17	73	17	69	16	3	5	74	1.14
4177636--4177697	16	3.8	16	83	12	72	19	1	6	72	1.15
4178058--4178279	48	4.6	49	83	5	218	38	19	12	29	1.88
4190097--4190127	10	3.1	10	100	0	62	41	0	0	58	0.98
4191724--4191804	27	3.1	26	80	10	85	13	0	9	76	1.02
4195373--4195421	19	2.6	19	80	0	53	32	18	12	36	1.88
4198137--4198259	11	10.5	11	70	23	51	76	2	3	17	1.03
4198123--4198190	6	11.3	6	74	16	61	79	1	4	14	0.96
4198118--4198244	12	10.2	13	70	22	62	73	2	4	19	1.13
4199199--4199320	14	8.4	14	71	20	67	61	2	2	33	1.22
4199200--4199250	25	2.0	25	85	7	68	58	1	0	39	1.09
4203892--4203939	18	2.6	17	81	12	60	16	0	4	79	0.89
4203881--4203960	26	3.1	26	83	3	90	13	0	10	76	1.02
4207546--4207594	19	2.6	19	76	0	53	30	20	14	34	1.92
4209528--4209592	31	2.1	30	83	8	78	63	26	3	7	1.36
4209755--4209808	23	2.3	23	96	0	99	25	16	16	40	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4210554--4210794	130	1.9	130	85	5	335	46	7	12	34	1.70
4211702--4211737	18	2.0	18	88	0	54	36	2	19	41	1.66
4212156--4212203	19	2.5	19	86	0	60	27	16	18	37	1.92
4213496--4213560	26	2.6	25	85	7	80	49	1	3	46	1.27
4216746--4216818	30	2.4	30	84	4	94	42	9	6	41	1.64
4216766--4216829	30	2.2	28	78	13	67	40	7	6	45	1.58
4217269--4217293	12	2.1	12	100	0	50	24	0	28	48	1.52
4217268--4217310	19	2.3	19	87	0	59	20	0	30	48	1.50
4217281--4217345	26	2.5	26	71	0	67	18	3	35	43	1.66
4217268--4217319	19	2.7	19	84	0	50	21	1	32	44	1.63
4219865--4219919	18	3.2	17	80	12	67	81	10	1	5	0.92
4219865--4219921	24	2.5	23	81	13	64	82	10	1	5	0.90
4228314--4228366	12	4.8	12	75	17	51	16	1	16	64	1.39
4228377--4228418	3	14.7	3	80	9	52	28	0	4	66	1.12
4240873--4240963	40	2.3	40	83	5	114	26	13	17	42	1.86
4241044--4241481	40	11.3	39	74	9	315	27	10	18	42	1.84
4241044--4241448	80	5.2	77	76	11	371	27	10	19	42	1.84
4241251--4241313	33	1.9	33	86	0	90	25	12	25	36	1.91
4241044--4241474	79	5.5	76	75	11	324	27	10	19	42	1.84
4242525--4242558	17	1.9	18	88	5	52	5	11	0	82	0.83
4242566--4242639	9	7.3	10	71	18	55	22	0	5	71	1.06
4242548--4242598	20	2.5	20	84	9	68	15	1	7	74	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4242602--4242643	15	2.9	15	86	10	61	28	0	4	66	1.12
4242602--4242643	3	14.7	3	80	9	52	28	0	4	66	1.12
4243015--4243054	13	2.9	14	81	7	55	75	2	2	20	1.04
4243543--4243572	3	10.0	3	100	0	60	66	0	0	33	0.92
4245003--4245052	25	2.1	24	85	7	66	32	0	0	68	0.90
4245251--4245281	11	2.8	11	95	0	53	22	29	22	25	1.99
4247701--4247725	2	12.5	2	100	0	50	48	0	0	52	1.00
4249349--4249431	43	2.0	42	95	2	148	15	14	6	63	1.48
4249350--4249445	42	2.3	43	87	1	122	15	13	5	65	1.43
4252869--4252902	16	2.1	16	88	0	50	47	0	0	52	1.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121