Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167904.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_17, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  21107920

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   

This is table  121  of  121  ( 14423 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
21085837--21086114
116
2.4
116
82
4
330
25
11
21
41
1.87
21086038--21086121
40
2.1
39
80
6
89
28
13
16
41
1.86
21087132--21087185
12
4.4
12
83
4
63
7
11
3
77
1.09
21087151--21087213
25
2.6
24
87
2
81
14
3
9
73
1.21
21087178--21087213
12
3.0
12
84
15
56
16
0
11
72
1.12
21088508--21088618
34
3.3
34
76
8
102
37
11
17
33
1.86
21088508--21088621
17
6.8
17
72
5
70
38
12
16
32
1.86
21088484--21088621
51
2.7
51
78
6
127
38
13
15
33
1.86
21092812--21092872
24
2.7
22
80
14
63
73
4
1
19
1.10
21093554--21093608
26
2.1
26
93
6
94
61
18
5
14
1.51
21093702--21093947
43
5.7
43
79
5
212
42
15
13
28
1.85
21093702--21093948
130
1.9
128
80
4
282
42
15
13
27
1.85
21094209--21094303
34
2.8
34
85
4
84
36
16
15
30
1.91
21094228--21094303
35
2.2
34
92
2
125
35
17
15
31
1.91
21094228--21094331
35
3.1
35
84
4
115
34
15
17
32
1.91
21094924--21094971
15
3.2
15
82
8
62
62
0
37
0
0.95
21095229--21095253
13
1.9
13
100
0
50
28
0
0
72
0.86
21095499--21095534
8
4.6
8
89
3
56
77
2
0
19
0.88
21104168--21104200
15
2.2
15
94
0
57
21
27
21
30
1.98
21105572--21105660
43
2.1
42
89
10
137
24
15
19
40
1.90
21106851--21106892
9
4.8
9
88
5
68
78
2
0
19
0.86
21106851--21106891
17
2.3
18
91
4
66
80
2
0
17
0.82
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
21107257--21107365
56
1.9
57
81
9
134
45
10
11
32
1.74

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121

The End!