genome.fa.s79.2.7.7.80.10.50.1000.47.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167904.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_17, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  21107920

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   

This is table  47  of  121  ( 14423 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8208977--8209019	12	3.2	13	80	12	52	65	2	6	25	1.30
8210103--8210129	10	2.7	10	100	0	54	44	0	0	55	0.99
8211218--8211252	17	2.1	17	94	0	61	42	14	8	34	1.76
8211651--8211702	19	2.9	17	78	18	52	78	3	11	5	1.05
8218365--8218404	21	1.9	21	84	0	53	72	0	25	2	0.97
8218374--8218404	15	2.0	16	93	6	55	70	0	25	3	1.02
8220541--8220723	98	1.9	98	86	4	262	35	20	15	27	1.94
8220512--8220823	33	9.6	33	69	13	171	34	21	17	26	1.95
8221453--8222913	34	42.7	34	75	5	756	20	18	11	48	1.79
8221535--8222913	102	13.4	103	77	6	951	21	18	11	48	1.79
8221663--8222913	137	9.2	133	74	10	551	20	18	11	49	1.78
8222337--8222426	17	5.3	17	68	10	67	22	13	7	56	1.62
8222342--8222399	18	3.3	18	74	16	59	25	10	6	56	1.57
8221967--8222913	137	7.0	138	77	7	607	21	18	11	49	1.78
8223565--8223801	129	1.8	129	83	3	316	29	14	13	42	1.84
8229678--8229733	29	2.0	28	82	3	67	73	3	1	21	1.08
8229684--8229731	23	2.1	23	84	7	62	75	4	2	18	1.07
8230492--8230520	15	1.9	15	100	0	58	27	17	20	34	1.95
8231398--8231437	21	1.9	21	89	0	62	37	17	12	32	1.87
8231851--8232003	58	2.6	58	88	1	216	37	19	13	28	1.90
8234144--8234189	20	2.3	20	84	0	56	84	4	8	2	0.83
8235468--8235527	20	3.0	20	69	13	52	51	1	0	46	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8236197--8236282	34	2.5	35	74	12	97	32	11	15	40	1.83
8238170--8238286	61	1.9	62	91	1	191	39	5	8	46	1.59
8239000--8239049	17	2.7	19	79	17	61	66	10	0	24	1.22
8242124--8242204	34	2.4	34	80	0	81	46	9	6	37	1.62
8243207--8243240	17	2.0	17	100	0	68	64	0	0	35	0.94
8252511--8252589	22	3.7	20	77	11	68	44	13	8	32	1.75
8252689--8252919	36	6.3	36	74	7	139	45	11	12	30	1.77
8252757--8252804	19	2.5	19	93	0	78	54	14	8	22	1.67
8252689--8252920	18	12.7	18	73	10	107	46	11	12	30	1.77
8252712--8252880	55	3.1	54	75	9	148	46	12	11	29	1.77
8252857--8252976	28	4.3	28	69	26	85	45	10	16	27	1.81
8252776--8253091	36	8.4	36	73	9	168	45	10	13	30	1.77
8252779--8253422	156	4.1	156	71	12	392	44	10	14	30	1.79
8252949--8253321	18	19.9	18	68	15	93	45	8	14	32	1.75
8253040--8253091	8	5.9	8	79	16	50	50	9	11	28	1.70
8253009--8253206	20	10.5	20	73	13	143	45	9	13	30	1.76
8253040--8253206	9	17.8	9	68	16	81	46	9	13	29	1.75
8253008--8253186	37	4.8	37	76	11	163	45	9	13	30	1.76
8253004--8253206	75	2.7	77	77	8	215	47	9	13	30	1.74
8254297--8254349	13	3.9	13	80	9	70	35	11	24	28	1.90
8254290--8254362	28	2.6	28	93	0	128	36	9	21	31	1.86
8254290--8254362	15	5.1	15	77	12	82	36	9	21	31	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8259285--8259640	39	9.2	38	76	6	236	24	11	18	45	1.83
8259362--8259640	77	3.6	77	77	6	201	23	12	18	45	1.84
8259354--8259640	115	2.5	116	81	6	337	24	12	18	44	1.84
8261692--8261778	46	1.9	44	90	4	138	9	18	0	72	1.10
8261696--8261748	26	2.0	26	82	7	63	9	20	0	69	1.15
8261693--8261793	46	2.3	45	80	12	115	10	18	0	70	1.16
8277567--8277714	60	2.4	60	81	7	165	43	10	18	28	1.82
8277527--8277744	61	3.7	61	76	8	166	40	12	17	29	1.86
8277598--8278175	183	3.2	183	79	8	570	37	14	15	31	1.88
8277585--8278110	61	8.7	59	68	11	204	38	14	15	30	1.88
8279221--8279309	33	2.6	34	82	8	119	30	14	15	39	1.88
8283363--8283410	24	1.9	24	91	8	78	35	0	0	64	0.94
8283364--8283431	12	5.6	12	69	13	50	41	0	0	58	0.98
8283394--8283466	19	3.3	23	73	23	77	47	0	0	52	1.00
8283397--8283465	23	3.1	22	84	12	79	46	0	0	53	1.00
8283410--8283474	22	3.1	21	79	16	73	49	0	0	50	1.00
8287945--8288020	38	2.0	39	84	5	102	35	13	18	32	1.89
8291465--8291491	9	3.0	9	100	0	54	55	0	0	44	0.99
8291809--8291842	17	2.0	17	88	11	52	76	5	17	0	0.98
8294017--8294073	19	3.0	19	82	14	73	22	15	19	42	1.89
8294019--8294085	19	3.6	17	75	13	53	22	14	19	43	1.87
8294010--8294097	38	2.3	39	75	15	94	20	12	19	47	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8294268--8294326	3	19.7	3	100	0	118	33	0	0	66	0.92
8294349--8294399	22	2.3	22	87	12	70	23	7	0	68	1.15
8295781--8295805	11	2.3	11	100	0	50	24	16	0	60	1.36
8299455--8299498	17	2.6	17	81	0	52	29	11	2	56	1.46
8300405--8300442	20	1.9	20	89	10	60	42	5	2	50	1.39
8310629--8310688	13	4.8	12	78	15	68	18	0	3	78	0.89
8310637--8310688	28	1.9	26	88	7	77	19	0	3	76	0.93
8310629--8310688	25	2.3	26	78	13	63	18	0	3	78	0.89
8316880--8316928	25	2.0	25	91	0	80	36	12	16	34	1.86
8317307--8317376	31	2.3	31	83	11	90	38	47	5	8	1.58
8317670--8317700	14	2.2	14	94	0	53	54	3	6	35	1.42
8319262--8319304	20	2.3	18	84	11	52	39	0	4	55	1.20
8319527--8320692	371	3.1	371	83	3	1530	27	22	30	18	1.98
8320526--8320858	166	2.0	167	89	0	506	29	24	28	17	1.97
8320693--8321811	371	3.0	368	85	3	1451	27	21	30	20	1.98
8323492--8323525	3	11.3	3	100	0	68	35	0	32	32	1.58
8324618--8324661	21	2.0	21	86	4	61	22	29	25	22	1.99
8327814--8327851	20	1.9	19	89	5	58	23	2	28	44	1.67
8327780--8327871	45	2.1	44	84	11	120	22	4	26	46	1.70
8339494--8339706	60	3.5	60	74	7	187	36	17	13	32	1.88
8339458--8339659	60	3.3	59	75	7	181	41	17	12	28	1.85
8339458--8339706	122	2.0	122	85	1	329	40	16	12	30	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8344785--8344821	13	2.8	13	83	0	56	24	13	5	56	1.58
8345865--8347592	161	10.9	161	78	5	1488	32	10	16	41	1.81
8345996--8347225	637	1.9	636	81	4	1458	31	10	16	42	1.81
8346974--8347582	304	2.0	304	83	5	772	31	10	16	41	1.82
8348176--8348252	21	3.7	21	70	6	66	42	14	24	18	1.87
8350220--8350252	15	2.1	16	94	5	59	54	6	0	39	1.25
8350866--8351398	261	2.0	263	82	3	637	33	13	16	36	1.88
8356364--8356450	13	5.9	15	67	20	51	17	3	1	78	0.96
8356364--8356449	5	16.6	5	77	17	63	17	3	1	77	0.96
8356378--8356453	11	6.5	11	76	11	80	19	2	1	76	0.98
8356364--8356458	6	15.7	6	73	15	72	17	4	1	76	1.00
8356364--8356517	36	4.1	36	72	20	93	18	4	2	74	1.11
8356364--8356509	78	1.9	78	80	8	172	18	4	2	73	1.12
8356602--8356641	11	3.5	12	75	25	50	27	5	5	62	1.37
8356602--8356670	22	3.3	21	82	13	81	24	5	4	65	1.33
8356602--8356683	19	4.1	19	81	13	60	23	4	3	68	1.25
8356604--8356693	41	2.2	42	82	9	105	22	5	3	68	1.25
8357496--8357646	5	29.8	5	72	16	66	19	3	2	74	1.07
8357495--8357646	6	25.7	6	68	18	52	19	3	2	75	1.07
8357563--8357616	27	2.0	28	88	3	83	11	3	1	83	0.85
8357570--8357615	11	4.3	11	80	5	58	10	2	2	84	0.79
8357558--8357646	19	4.8	18	73	21	67	13	5	2	78	1.02
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8357570--8357646	22	3.4	22	79	15	70	12	3	2	80	0.95
8357560--8357650	28	3.2	26	76	17	85	12	6	2	79	1.02
8357662--8357988	59	5.7	57	81	8	385	45	6	12	35	1.67
8357661--8357988	58	5.7	58	81	8	384	45	6	12	35	1.67
8357661--8357989	116	2.8	116	88	4	486	45	6	12	35	1.67
8364841--8364966	8	16.6	8	91	8	203	74	0	12	12	1.07
8364841--8364966	15	8.3	15	96	3	211	74	0	12	12	1.07
8365989--8366164	41	4.1	41	83	9	217	25	16	22	35	1.94
8366050--8366208	41	3.8	41	85	7	169	24	16	22	37	1.94
8366575--8366651	22	3.8	21	77	16	72	25	2	2	68	1.15

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121