genome.fa.s79.2.7.7.80.10.50.1000.31.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167904.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_17, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  21107920

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   

This is table  31  of  121  ( 14423 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5414208--5414239	15	2.3	15	89	10	50	59	0	0	40	0.97
5414369--5414433	25	2.7	24	84	11	80	66	0	1	32	1.01
5414389--5414432	16	2.9	15	90	6	63	72	0	0	27	0.85
5414513--5414584	25	2.6	26	73	25	67	47	5	5	41	1.50
5416492--5416524	6	5.7	6	89	3	50	3	0	66	30	1.06
5419934--5420016	42	2.0	42	80	0	94	20	27	19	32	1.97
5419943--5420071	42	3.1	42	81	2	134	20	21	20	37	1.95
5432344--5432396	22	2.5	22	87	9	74	67	1	28	1	1.11
5442717--5442748	3	10.7	3	100	0	64	31	0	0	68	0.90
5450995--5451019	12	2.1	12	100	0	50	16	8	40	36	1.77
5451201--5451231	3	10.3	3	100	0	62	32	35	0	32	1.58
5451975--5452011	12	3.1	12	88	0	56	35	32	8	24	1.85
5457646--5457671	13	2.0	13	100	0	52	30	30	7	30	1.85
5457679--5457714	18	2.0	18	94	0	63	47	11	13	27	1.77
5466529--5466574	2	23.0	2	81	0	56	50	0	0	50	1.00
5468098--5468128	2	15.5	2	100	0	62	48	0	0	51	1.00
5469501--5469529	3	9.7	3	100	0	58	68	0	0	31	0.89
5471436--5471475	22	1.9	20	85	10	53	57	5	15	22	1.57
5475374--5475411	16	2.3	17	81	4	51	39	0	0	60	0.97
5475392--5475452	24	2.6	24	87	5	81	40	1	1	55	1.19
5487771--5487809	15	2.6	15	87	0	51	53	7	0	38	1.30
5487786--5487820	15	2.3	15	90	5	52	65	5	0	28	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5487794--5487840	24	2.0	24	86	0	67	70	4	0	25	1.05
5487958--5488014	25	2.3	24	76	8	53	63	7	1	28	1.30
5488155--5488232	38	2.1	38	80	4	86	43	2	2	51	1.29
5488362--5488408	19	2.5	19	86	10	62	44	2	0	53	1.12
5488708--5488763	20	2.7	21	81	10	71	55	0	0	44	0.99
5488726--5488780	20	2.8	20	81	10	60	56	0	0	43	0.99
5488854--5488896	18	2.4	18	88	11	63	60	4	0	34	1.17
5488843--5488996	20	7.9	19	71	15	77	62	7	2	27	1.35
5489342--5489392	19	2.7	18	77	17	59	25	1	5	66	1.24
5489476--5489528	27	2.0	27	84	0	70	45	3	0	50	1.19
5489776--5489856	30	2.7	29	84	7	99	49	3	1	45	1.27
5490291--5490333	18	2.5	17	85	11	52	58	4	2	34	1.32
5490474--5490549	20	3.8	20	73	19	61	30	0	3	65	1.10
5490524--5490592	31	2.1	34	86	10	99	30	1	0	68	0.99
5490541--5490626	37	2.4	34	81	7	91	32	2	1	63	1.14
5490588--5490645	27	2.1	27	78	15	66	36	3	1	58	1.25
5490605--5490637	17	1.9	17	93	0	57	33	6	0	60	1.21
5490759--5490825	19	3.7	18	70	7	64	29	0	5	64	1.17
5490815--5490882	27	2.4	29	85	9	88	27	0	7	64	1.20
5490876--5490955	19	4.3	18	77	17	67	40	1	1	57	1.15
5490905--5490960	27	2.0	28	86	3	78	44	0	1	53	1.11
5490876--5490955	36	2.2	38	86	8	112	40	1	1	57	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5490915--5490971	28	2.2	26	81	9	62	42	1	1	54	1.21
5500036--5500310	137	2.0	138	93	1	471	32	18	15	33	1.92
5505204--5505234	3	10.3	3	100	0	62	67	0	32	0	0.91
5506056--5506123	11	6.5	11	72	13	63	41	0	4	54	1.20
5506154--5506178	12	2.1	12	100	0	50	40	0	8	52	1.31
5510597--5510627	12	2.7	12	95	5	55	32	0	12	54	1.38
5510871--5510985	57	2.0	56	96	1	212	53	0	7	38	1.30
5510940--5510981	17	2.3	18	80	12	50	64	0	2	33	1.07
5511648--5511688	12	3.5	11	83	9	55	63	0	0	36	0.95
5513555--5513590	3	11.7	3	94	5	63	30	2	0	66	1.06
5514351--5514479	58	2.2	56	80	5	141	23	10	8	58	1.58
5515061--5515099	18	2.2	17	86	9	51	87	7	0	5	0.68
5515865--5515916	20	2.5	21	81	12	63	75	3	5	15	1.14
5516141--5516271	43	3.0	43	80	7	142	45	16	12	25	1.81
5517328--5517384	18	3.3	17	83	11	80	14	7	0	78	0.94
5526730--5526834	50	2.1	50	89	0	165	48	6	20	23	1.73
5527887--5528077	61	3.2	61	74	11	180	21	8	9	59	1.56
5528414--5528455	19	2.2	19	87	8	59	19	0	2	78	0.86
5531170--5531226	18	3.3	17	83	11	80	14	7	0	78	0.94
5540535--5540639	50	2.1	50	89	0	165	48	6	20	23	1.73
5541709--5541899	60	3.2	57	79	7	193	19	9	9	61	1.54
5542074--5542456	202	1.9	200	83	6	497	38	8	5	47	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5542481--5542532	26	2.0	26	82	10	63	69	15	1	13	1.28
5542785--5542823	13	2.8	13	88	7	51	0	38	0	61	0.96
5544359--5544474	56	2.1	56	96	0	214	47	3	8	40	1.51
5544493--5544538	18	2.5	18	85	3	56	43	6	6	43	1.56
5547622--5547671	13	3.6	14	77	15	50	60	2	10	28	1.40
5549122--5549148	7	3.9	7	100	0	54	70	0	0	29	0.88
5557183--5557207	12	2.1	12	100	0	50	60	0	0	40	0.97
5557578--5557617	21	1.9	21	90	10	64	62	0	0	37	0.95
5557697--5557727	16	2.0	16	93	6	55	58	0	0	41	0.98
5557681--5557738	29	2.0	30	83	10	75	53	0	3	43	1.17
5558470--5558504	13	2.7	13	90	0	52	65	2	0	31	1.07
5558473--5558534	16	4.1	16	74	23	53	64	1	0	33	1.03
5563252--5563284	12	2.8	12	95	0	57	39	51	6	3	1.42
5563250--5563284	14	2.5	14	90	0	52	40	51	5	2	1.40
5564543--5564572	15	2.0	15	100	0	60	40	6	6	46	1.56
5566835--5566868	4	8.5	4	86	0	50	20	2	2	73	1.09
5574013--5574493	72	6.7	70	75	13	338	41	7	12	38	1.71
5574082--5574466	142	2.7	144	79	12	396	42	6	11	38	1.68
5586393--5586417	12	2.1	12	100	0	50	44	0	0	56	0.99
5587267--5587300	3	11.3	3	100	0	68	35	0	0	64	0.94
5587825--5587891	12	5.8	12	76	20	54	35	0	0	64	0.94
5587835--5587885	16	3.4	16	79	20	74	31	0	0	68	0.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5587839--5587890	22	2.3	22	83	12	61	32	0	0	67	0.91
5587835--5587891	18	3.4	18	79	18	61	33	0	0	66	0.92
5587878--5587928	20	2.5	20	87	12	77	49	0	0	50	1.00
5587881--5587927	21	2.2	21	92	7	78	48	0	0	51	1.00
5587878--5587930	21	2.7	19	86	13	72	50	0	0	49	1.00
5592393--5592437	20	2.2	20	88	8	63	82	0	11	6	0.84
5594359--5594391	3	11.0	3	100	0	66	33	0	0	66	0.92
5594523--5594554	2	16.0	2	93	0	55	53	0	0	46	1.00
5594753--5594797	13	3.1	14	81	15	56	53	0	0	46	1.00
5594775--5594807	16	2.0	17	88	5	50	48	0	0	51	1.00
5605388--5605415	3	9.3	3	100	0	56	67	0	0	32	0.91
5605599--5605702	52	2.0	51	84	1	136	27	19	5	47	1.72
5608400--5608572	87	2.0	87	81	4	206	38	3	12	45	1.58
5608484--5608611	61	2.1	61	81	10	145	39	5	8	46	1.58
5608632--5608758	63	2.0	63	85	8	170	37	5	10	47	1.61
5608695--5608815	56	2.2	57	86	5	167	38	4	9	47	1.59
5613609--5613658	22	2.3	22	85	0	64	32	2	2	64	1.16
5613737--5613762	2	13.0	2	100	0	52	50	0	0	50	1.00
5628003--5628033	2	15.5	2	100	0	62	51	0	0	48	1.00
5637695--5637735	22	1.9	21	85	5	55	17	2	48	31	1.60
5641278--5641303	2	13.0	2	100	0	52	50	0	0	50	1.00
5643555--5643582	2	14.0	2	100	0	56	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5648462--5648497	18	2.0	18	100	0	72	44	0	33	22	1.53
5648464--5648507	18	2.4	18	88	3	61	50	0	27	22	1.50
5649864--5650043	36	5.0	35	76	6	146	48	21	6	23	1.74
5649863--5650004	72	2.0	72	81	2	169	46	22	7	23	1.76
5651497--5651565	29	2.4	29	80	0	84	57	8	5	27	1.51
5658650--5658690	3	13.7	3	94	0	73	29	2	0	68	1.03
5663603--5663877	135	2.0	137	98	1	536	24	16	16	42	1.88
5665279--5665361	29	2.8	29	81	5	85	45	6	2	45	1.41
5666060--5666137	38	2.1	38	87	0	111	41	15	19	24	1.90
5666919--5667034	58	2.0	57	89	1	178	42	8	12	36	1.74

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121