genome.fa.s79.2.7.7.80.10.50.1000.18.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167904.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_17, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  21107920

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   

This is table  18  of  121  ( 14423 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3272941--3273035	44	2.2	44	81	7	104	38	7	2	51	1.42
3273356--3273405	23	2.1	24	89	10	77	36	2	2	60	1.20
3280725--3280787	28	2.2	28	83	10	76	46	3	0	50	1.17
3280730--3280788	29	2.1	28	84	9	75	49	3	0	47	1.18
3280972--3281012	22	2.0	22	85	9	59	51	4	4	39	1.45
3281284--3281308	12	2.1	12	100	0	50	68	0	0	32	0.90
3282111--3282176	27	2.4	27	75	22	66	45	0	4	50	1.22
3282263--3282305	2	23.0	2	86	13	65	48	0	0	51	1.00
3287517--3287605	44	2.0	44	86	0	124	29	14	13	42	1.84
3288428--3288473	23	2.0	23	95	0	83	36	23	4	34	1.75
3290509--3290590	19	5.0	16	67	17	53	47	1	2	48	1.22
3292596--3292637	13	3.5	12	75	12	50	69	0	2	28	1.01
3292598--3292645	11	4.2	11	84	7	60	66	0	4	29	1.10
3295471--3295500	14	2.1	15	93	6	53	63	0	0	36	0.95
3296109--3296168	3	21.0	3	73	10	54	60	0	1	38	1.07
3296109--3296167	21	3.3	18	84	15	70	59	0	1	38	1.08
3297598--3297823	15	14.5	16	73	13	125	47	27	1	23	1.59
3297598--3297805	64	3.3	64	74	14	182	48	26	1	23	1.59
3297759--3297857	29	3.5	28	75	8	92	46	28	1	24	1.59
3297889--3297930	21	2.0	22	86	13	61	52	28	0	19	1.46
3298352--3298389	19	2.1	19	85	5	51	65	2	0	31	1.06
3306343--3306406	22	2.9	21	79	4	74	28	17	18	35	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3306532--3306742	87	2.4	87	77	5	221	21	16	17	45	1.86
3306652--3307107	110	4.1	110	79	5	406	24	18	16	40	1.90
3306850--3306893	22	2.0	22	86	0	61	25	18	20	36	1.95
3306961--3307004	22	2.0	22	86	0	61	27	15	18	38	1.91
3307063--3307129	23	3.0	23	88	2	91	25	23	20	29	1.99
3307085--3307311	111	2.1	110	80	2	249	24	17	15	42	1.88
3307234--3307403	88	1.9	88	81	0	205	22	18	15	43	1.87
3307327--3307542	110	2.0	111	80	5	251	24	21	14	39	1.90
3307503--3307570	23	3.0	23	85	6	77	27	25	19	27	1.98
3308289--3308347	22	2.7	23	86	7	77	25	23	20	30	1.98
3308289--3308355	22	3.0	22	81	14	75	23	23	22	29	1.99
3308208--3308546	131	2.6	132	84	4	443	23	19	18	37	1.94
3308420--3308482	22	2.8	22	87	2	90	31	22	14	31	1.93
3308711--3308771	9	6.7	9	70	10	52	55	1	0	42	1.09
3308746--3308776	16	1.9	16	93	0	53	67	0	0	32	0.91
3309799--3309841	17	2.6	17	82	13	54	20	0	2	76	0.89
3310238--3310348	15	7.1	15	70	9	69	46	28	2	21	1.65
3310256--3310322	32	2.1	32	86	5	91	50	28	1	19	1.56
3310257--3310348	48	1.9	48	86	0	130	47	30	2	19	1.61
3310358--3310408	14	3.6	14	84	5	66	45	29	0	25	1.54
3310422--3310469	14	3.3	14	77	11	51	52	25	2	20	1.58
3310396--3310529	30	4.6	29	75	12	121	49	28	0	21	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3316460--3316501	21	2.0	21	85	0	57	45	7	0	47	1.30
3320311--3320360	22	2.2	23	82	13	59	56	10	2	32	1.44
3320678--3320721	19	2.4	18	82	14	54	75	2	0	22	0.92
3321510--3321559	22	2.2	23	82	13	59	56	10	2	32	1.44
3321876--3321919	19	2.4	18	82	14	54	75	2	0	22	0.92
3323078--3323121	19	2.4	18	82	14	54	75	2	0	22	0.92
3324532--3324587	14	4.1	13	79	9	58	26	0	1	71	0.96
3324556--3324587	16	1.9	17	93	6	57	25	0	0	75	0.81
3325763--3325813	3	17.0	3	100	0	102	33	0	0	66	0.92
3326165--3326375	34	6.2	33	67	13	108	48	13	18	19	1.80
3326230--3326591	102	3.5	102	86	3	478	46	12	20	21	1.83
3326321--3326591	34	8.0	34	72	6	199	46	11	20	21	1.82
3326688--3327134	73	6.1	73	81	4	499	44	12	21	20	1.85
3326696--3327128	219	2.0	219	83	3	559	44	12	21	21	1.85
3328179--3328265	9	10.8	8	78	11	72	12	4	1	81	0.89
3328197--3328265	4	15.0	5	77	19	53	14	2	1	81	0.88
3328197--3328231	14	2.6	14	95	4	63	20	0	0	80	0.72
3328237--3328264	13	2.2	13	100	0	56	0	7	0	92	0.37
3339584--3339610	13	2.1	13	100	0	54	22	0	29	48	1.51
3339833--3339904	30	2.4	29	80	11	83	29	1	1	68	1.07
3340938--3340989	23	2.3	23	86	0	77	23	17	48	11	1.79
3341047--3341102	26	2.1	25	83	12	67	35	0	0	64	0.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3350402--3350432	2	15.5	2	100	0	62	51	0	0	48	1.00
3351121--3351154	14	2.4	14	90	0	50	52	0	0	47	1.00
3351376--3351409	13	2.5	13	90	4	50	20	2	8	67	1.31
3354059--3354084	2	13.0	2	100	0	52	50	0	50	0	1.00
3356704--3356789	34	2.5	34	85	9	120	40	9	9	40	1.69
3361625--3361686	29	2.1	29	96	0	115	43	32	16	8	1.77
3363240--3363282	14	2.9	15	82	10	52	39	0	2	58	1.11
3380131--3380164	14	2.4	14	95	5	59	58	0	2	38	1.13
3380403--3380518	23	5.4	20	74	19	92	39	1	0	57	1.15
3381610--3381992	187	2.0	194	85	5	528	43	5	9	42	1.59
3382494--3382531	18	2.1	19	85	5	51	55	0	5	39	1.23
3382884--3382942	31	1.9	31	85	0	82	40	5	1	52	1.33
3383183--3383221	16	2.4	16	82	0	51	25	10	5	58	1.51
3384940--3384987	4	11.5	4	79	16	53	70	4	2	22	1.15
3384930--3384997	21	3.2	20	81	10	64	70	7	1	20	1.19
3384922--3384976	22	2.5	23	77	11	62	70	7	1	20	1.20
3384940--3384987	13	3.8	12	77	20	53	70	4	2	22	1.15
3384940--3384990	17	3.0	17	85	0	66	68	3	1	25	1.17
3385950--3385988	19	2.1	18	86	13	53	66	5	2	25	1.25
3386042--3386087	3	14.3	3	95	4	65	69	0	0	30	0.89
3386283--3386407	39	3.2	39	86	2	153	44	18	13	24	1.86
3386283--3386429	78	1.9	78	81	2	179	45	15	12	25	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3386292--3386485	78	2.5	78	77	3	176	44	17	11	26	1.83
3387365--3387860	246	2.0	247	99	0	976	20	20	6	53	1.67
3393095--3393153	31	2.1	28	81	15	68	50	11	15	22	1.76
3395177--3395248	34	2.1	34	85	12	94	72	11	2	13	1.23
3396238--3396324	4	21.8	4	70	13	54	67	4	4	22	1.28
3396204--3396308	52	2.0	52	88	0	156	63	5	5	24	1.38
3396348--3396381	3	11.3	3	87	0	50	67	5	0	26	1.13
3396348--3396384	12	3.1	12	92	0	56	67	8	0	24	1.17
3397130--3397194	31	2.1	32	82	8	80	43	4	0	52	1.22
3397373--3397453	41	2.0	42	90	2	128	39	18	4	37	1.72
3397587--3397675	44	2.0	44	95	0	160	38	14	19	28	1.91
3402973--3403022	11	4.2	12	85	10	50	68	4	0	28	1.08
3402990--3403022	11	2.9	11	95	4	57	69	0	0	30	0.88
3405518--3405542	1	25.0	1	100	0	50	100	0	0	0	0.00
3408878--3408904	13	2.1	13	100	0	54	22	0	0	77	0.76
3409524--3409583	29	2.1	29	90	0	93	60	3	8	28	1.42
3414268--3414342	33	2.3	33	95	0	132	32	44	6	17	1.75
3414367--3414923	48	11.4	48	71	5	427	28	45	5	21	1.72
3414400--3414479	27	3.2	26	64	20	62	22	48	2	26	1.63
3414319--3414589	147	1.9	145	87	0	335	29	44	5	20	1.74
3414415--3414779	198	1.8	198	94	0	649	29	44	5	20	1.73
3414727--3414805	21	3.5	21	73	18	68	21	56	1	20	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3414406--3414779	99	3.8	98	94	0	568	29	44	5	20	1.72
3414613--3414923	144	2.1	145	89	1	471	27	46	4	20	1.71
3414450--3414875	198	2.2	195	83	3	498	30	44	6	19	1.75
3414901--3415040	39	3.6	38	96	0	217	34	46	2	16	1.62
3414656--3414969	144	2.2	145	80	6	359	30	45	5	19	1.72
3415145--3415184	6	6.7	6	91	0	62	17	67	0	15	1.23
3415509--3415549	22	1.9	22	85	5	57	51	12	0	36	1.40
3416463--3417452	87	11.1	87	80	6	860	31	47	4	17	1.66
3416463--3417452	177	5.6	175	78	7	886	31	47	4	17	1.66
3416937--3417003	33	1.9	35	85	8	93	31	49	2	16	1.61

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121