genome.fa.s79.2.7.7.80.10.50.1000.39.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167904.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_17, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  21107920

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   

This is table  39  of  121  ( 14423 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6904800--6904911	20	5.2	21	70	15	77	54	9	1	33	1.44
6904622--6904922	111	2.7	110	77	11	256	53	9	2	33	1.49
6904794--6904943	21	6.9	21	74	15	117	54	10	1	34	1.42
6904944--6905031	17	5.0	17	79	6	70	52	11	5	30	1.60
6904966--6905013	16	2.9	15	77	19	51	47	10	8	33	1.68
6905951--6906087	43	3.2	43	82	5	161	35	18	16	30	1.92
6906107--6906282	38	4.7	37	82	5	221	39	20	13	26	1.89
6906110--6906282	73	2.3	75	87	3	251	39	20	13	26	1.89
6906107--6906287	37	4.9	37	78	7	197	39	20	12	27	1.89
6906537--6906576	19	2.1	19	95	0	71	17	17	30	35	1.93
6906544--6906583	19	2.1	19	85	0	53	22	15	22	40	1.91
6906815--6906853	19	2.1	18	85	4	51	30	12	12	43	1.81
6906864--6906904	20	2.1	20	86	4	57	39	7	2	51	1.43
6906960--6906984	9	2.8	9	100	0	50	20	0	0	80	0.72
6906928--6907009	37	2.3	35	78	17	89	34	1	2	62	1.16
6906994--6907036	11	4.1	10	80	19	52	25	2	0	72	0.97
6906993--6907044	14	4.0	14	78	16	67	26	1	0	71	0.97
6906993--6907047	21	2.7	21	86	8	78	27	1	0	70	0.97
6907104--6907163	23	2.6	23	84	7	68	30	1	1	66	1.11
6907803--6907828	12	2.2	12	100	0	52	7	15	0	76	0.99
6907901--6907957	20	2.8	20	78	5	53	3	17	14	64	1.41
6908291--6908319	11	2.6	11	100	0	58	20	0	0	79	0.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6912061--6912186	43	3.0	43	84	1	173	36	15	15	32	1.89
6912198--6912416	37	5.9	37	79	9	223	37	22	10	28	1.88
6912200--6912423	38	6.0	38	78	7	235	38	22	11	28	1.88
6912201--6912425	111	2.0	113	85	6	307	39	22	11	27	1.88
6912472--6912602	48	2.7	49	83	4	169	41	17	10	30	1.84
6912918--6913152	113	2.1	113	91	0	380	38	15	11	34	1.84
6918125--6918170	22	2.0	23	91	4	76	56	13	4	26	1.55
6918268--6918701	24	18.8	24	69	19	262	54	10	2	32	1.48
6918243--6918323	42	2.0	40	90	4	126	54	12	2	30	1.51
6918248--6918406	47	3.5	47	82	8	152	54	12	2	30	1.51
6918322--6918712	47	8.5	47	72	16	222	54	10	2	32	1.48
6918400--6918466	21	3.2	20	81	6	80	55	10	2	31	1.49
6918400--6918487	21	4.1	20	72	16	68	55	10	2	31	1.46
6918268--6918735	208	2.3	208	92	1	809	54	11	2	31	1.49
6918641--6918685	21	2.1	21	87	0	63	57	8	2	31	1.41
6918680--6918738	21	3.0	20	76	11	61	55	11	1	30	1.46
6918387--6918712	66	4.8	66	76	11	300	54	10	2	32	1.48
6918731--6918776	16	2.9	15	81	9	56	54	6	8	30	1.56
6919878--6919932	23	2.3	24	84	6	76	40	10	29	20	1.86
6923226--6923329	48	2.2	48	84	3	129	27	29	10	31	1.90
6924984--6925043	27	2.2	27	82	5	68	45	15	5	35	1.68
6927513--6927554	13	2.9	14	83	13	50	19	0	0	80	0.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6927558--6927696	24	6.2	23	74	17	107	31	5	1	61	1.28
6927536--6927701	24	7.2	24	72	16	104	28	4	1	65	1.21
6927542--6927661	46	2.7	45	79	12	124	30	5	0	63	1.21
6927605--6927696	34	2.9	29	73	19	85	29	4	2	64	1.25
6927615--6927686	36	2.0	37	84	13	96	29	4	2	63	1.27
6928021--6928060	19	2.1	19	85	0	53	30	15	15	40	1.87
6928434--6928579	13	11.4	13	70	20	62	22	1	2	73	1.04
6928451--6928579	10	12.3	10	73	17	61	22	1	3	72	1.07
6928439--6928490	16	3.2	16	86	8	70	28	0	0	71	0.87
6928521--6928579	6	10.7	6	80	14	65	15	1	1	81	0.86
6928507--6928579	16	4.5	15	80	14	74	15	2	2	79	0.96
6928513--6928578	5	12.4	5	78	15	62	15	1	3	80	0.91
6928600--6928892	60	4.8	59	79	10	272	40	4	12	42	1.64
6928962--6928991	16	1.9	16	93	6	53	13	10	0	76	1.01
6939354--6939397	13	3.5	13	85	14	58	79	0	9	11	0.93
6939368--6939408	18	2.4	17	88	8	64	85	0	4	9	0.73
6940435--6940849	41	9.9	41	79	8	383	25	15	19	40	1.90
6940435--6940846	83	4.9	83	80	7	417	25	15	19	39	1.90
6941049--6941082	12	2.9	12	86	4	52	17	0	0	82	0.67
6941088--6941163	22	3.3	23	85	5	100	34	6	1	57	1.33
6941463--6941504	22	1.9	22	85	0	57	14	4	14	66	1.40
6941678--6941816	71	2.0	71	97	0	260	35	8	30	24	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6942047--6942083	18	2.0	19	89	5	58	27	0	5	67	1.12
6942095--6942152	16	3.4	16	84	11	71	15	6	0	77	0.97
6942104--6942152	11	4.4	11	80	14	55	14	6	0	79	0.91
6942095--6942141	6	8.0	6	83	7	53	17	6	0	76	0.98
6942112--6942163	18	2.9	17	83	13	61	13	5	1	78	1.01
6942155--6942409	118	2.1	120	82	5	320	43	5	10	41	1.61
6942179--6942413	60	4.0	60	79	8	284	42	5	11	41	1.62
6942181--6942522	118	2.9	117	79	10	311	40	5	12	41	1.67
6942590--6942618	15	1.9	15	100	0	58	13	10	0	75	1.04
6945535--6945612	37	2.1	37	87	0	111	38	24	15	21	1.92
6949303--6949330	3	9.3	3	100	0	56	67	0	0	32	0.91
6952845--6952878	13	2.5	13	90	4	50	82	0	8	8	0.85
6953506--6953554	24	2.1	23	84	3	62	57	4	20	18	1.57
6954161--6954227	16	3.9	16	71	21	55	67	1	1	29	1.09
6954449--6954513	19	3.4	19	75	8	60	43	21	12	23	1.86
6954655--6954707	19	2.8	19	82	5	63	47	30	7	15	1.73
6958766--6958842	34	2.3	34	86	0	100	36	14	20	28	1.92
6960861--6960923	27	2.4	25	78	17	65	17	11	0	71	1.14
6961088--6961120	14	2.4	14	94	0	57	45	0	0	54	0.99
6961081--6961111	2	15.5	2	93	0	53	48	0	0	51	1.00
6961140--6961182	20	2.3	19	81	14	54	44	6	0	48	1.29
6966161--6966185	12	2.1	12	100	0	50	52	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6966164--6966213	17	2.8	18	72	6	57	46	0	0	54	1.00
6967837--6967871	7	5.0	7	100	0	70	71	0	0	28	0.86
6968555--6968591	13	2.9	13	88	11	51	70	5	0	24	1.08
6969260--6969700	244	1.8	242	91	2	724	28	9	11	49	1.71
6969484--6970096	297	2.1	298	82	4	729	28	8	13	49	1.71
6971908--6971963	23	2.3	25	84	6	71	30	1	5	62	1.28
6973348--6973401	24	2.4	23	82	11	67	50	1	0	48	1.11
6975300--6975360	29	2.1	29	100	0	122	36	13	13	37	1.83
6976670--6976701	16	2.0	16	100	0	64	43	25	12	18	1.85
6989455--6989479	13	1.9	13	100	0	50	32	8	12	48	1.69
6995296--6995468	87	2.0	85	91	4	276	38	20	15	26	1.91
6996393--6996423	2	15.5	2	100	0	62	51	0	0	48	1.00
6996423--6996456	2	17.0	2	93	0	59	52	0	47	0	1.00
6998670--6998704	16	2.2	16	90	10	54	22	2	8	65	1.34
6998846--6998983	73	1.9	74	92	1	233	42	3	5	47	1.44
7002002--7002088	29	3.0	29	77	11	99	34	3	2	59	1.27
7002113--7002230	31	3.8	31	86	4	150	50	0	7	41	1.31
7002111--7002272	61	2.7	61	81	3	177	52	1	5	40	1.33
7002118--7002251	31	4.4	30	81	4	144	50	0	5	44	1.30
7004539--7004601	31	2.0	31	84	6	83	34	7	6	50	1.57
7005409--7005449	21	2.0	20	95	4	73	48	9	0	41	1.36
7005410--7005465	23	2.5	22	83	11	62	51	5	0	42	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7007517--7007563	25	1.9	25	87	12	71	46	6	0	46	1.28
7007769--7007822	27	2.0	28	89	10	85	57	0	0	42	0.98
7008913--7008943	2	15.5	2	100	0	62	48	0	0	51	1.00
7010425--7010473	20	2.5	20	68	0	53	71	0	4	24	1.03
7015412--7015436	10	2.5	10	100	0	50	40	20	8	32	1.81
7015554--7015604	3	17.0	3	100	0	102	66	0	0	33	0.92
7016465--7016511	23	2.0	23	100	0	94	44	8	8	38	1.65
7017343--7017381	19	2.0	21	85	10	55	43	2	2	51	1.29
7017883--7017913	14	2.2	14	94	0	53	41	0	3	54	1.16
7019032--7019077	23	2.0	23	82	0	56	60	2	2	34	1.21

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121