genome.fa.s79.2.7.7.80.10.50.1000.85.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167904.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_17, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  21107920

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   

This is table  85  of  121  ( 14423 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14434176--14434230	28	2.0	28	81	0	65	41	1	0	56	1.10
14436112--14436147	6	6.0	6	86	0	54	19	19	30	30	1.96
14441785--14441836	4	13.0	4	87	0	59	40	0	5	53	1.25
14441785--14441836	6	8.7	6	82	0	59	40	0	5	53	1.25
14443351--14443378	2	14.0	2	100	0	56	50	0	0	50	1.00
14453031--14453116	44	2.0	44	88	0	127	19	23	8	48	1.75
14457237--14457426	94	2.0	95	97	1	364	27	20	7	44	1.78
14462563--14462600	15	2.5	15	86	4	58	44	0	5	50	1.24
14462827--14462861	16	2.1	17	89	5	54	0	2	8	88	0.61
14463395--14463440	12	4.0	12	80	8	51	52	0	2	45	1.13
14463378--14463435	23	2.6	22	83	2	71	56	0	1	41	1.09
14463378--14463435	12	5.1	12	71	12	50	56	0	1	41	1.09
14464280--14464315	18	2.0	18	88	0	54	55	0	0	44	0.99
14465785--14465831	24	1.9	25	86	4	69	57	0	2	40	1.11
14465871--14465903	11	3.1	11	86	8	50	72	0	3	24	0.98
14465787--14465948	24	6.5	24	66	20	66	61	1	3	33	1.22
14466056--14466087	13	2.5	13	89	0	55	50	0	0	50	1.00
14466906--14466973	26	2.6	25	80	19	84	50	1	1	47	1.19
14466994--14467039	19	2.4	18	85	7	56	56	0	0	43	0.99
14467248--14467302	27	2.0	28	92	3	94	61	0	0	38	0.96
14467248--14467304	28	2.0	28	90	6	89	61	0	0	38	0.96
14467307--14467353	22	2.1	22	88	7	69	44	0	2	53	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14468228--14468280	22	2.4	22	81	9	63	67	0	1	30	1.01
14469062--14469099	15	2.6	15	83	4	51	55	0	5	39	1.23
14470421--14470693	106	2.7	100	83	7	309	46	15	10	27	1.78
14474666--14474719	22	2.4	23	84	6	67	66	1	0	31	1.02
14475347--14475396	20	2.5	20	90	6	75	50	0	0	50	1.00
14476181--14476884	47	14.8	48	79	9	667	40	20	10	29	1.86
14476181--14476883	48	14.7	47	79	8	625	39	20	10	29	1.86
14476194--14477110	95	9.7	93	78	7	703	39	19	10	29	1.86
14476701--14477144	227	2.0	227	92	0	744	38	19	11	30	1.87
14476916--14477110	47	4.1	47	84	1	255	40	17	11	30	1.86
14482891--14482918	5	5.6	5	100	0	56	0	21	0	78	0.75
14486101--14486208	54	2.0	54	94	3	191	18	17	7	56	1.64
14487788--14487825	17	2.3	17	86	4	51	0	0	21	78	0.74
14488920--14488964	21	2.2	20	84	4	54	37	4	6	51	1.49
14489127--14489176	12	4.2	12	77	12	50	40	0	0	60	0.97
14493755--14493800	23	2.0	23	86	0	65	32	6	21	39	1.79
14493777--14493836	15	3.9	15	74	10	50	31	5	21	41	1.75
14493827--14493862	8	4.5	8	86	13	56	22	0	25	52	1.47
14493774--14493902	16	8.2	16	71	13	70	26	3	23	46	1.69
14494337--14494387	15	3.3	15	78	5	57	58	7	0	33	1.27
14506095--14507818	580	3.0	571	85	7	2225	42	6	11	39	1.67
14508725--14508775	24	2.0	26	88	7	79	41	0	7	50	1.31
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14510646--14510684	12	3.2	12	82	7	51	71	0	28	0	0.86
14510649--14510681	13	2.4	14	85	15	50	69	0	30	0	0.88
14512123--14512196	32	2.3	31	86	4	94	25	5	10	58	1.53
14513973--14514011	20	2.0	19	85	14	53	30	17	17	33	1.94
14515811--14515940	49	2.7	50	79	13	130	54	6	13	26	1.61
14515977--14516011	17	2.0	18	88	5	54	54	5	8	31	1.54
14518065--14518109	21	2.1	21	84	8	56	24	6	13	55	1.62
14521235--14521502	125	2.2	122	81	9	305	36	13	10	38	1.80
14526177--14526291	51	2.3	49	80	10	126	47	0	2	48	1.21
14532101--14532201	52	1.9	53	85	2	141	34	7	10	46	1.68
14534607--14534632	3	8.7	3	100	0	52	30	0	0	69	0.89
14536545--14536584	20	2.0	21	85	14	57	40	0	0	60	0.97
14537656--14537686	11	2.7	12	95	5	55	0	9	0	90	0.46
14538332--14538371	20	2.0	21	85	5	55	12	10	0	77	0.99
14546122--14546160	18	2.2	18	95	0	69	17	0	41	41	1.50
14547503--14547611	6	18.3	6	86	1	58	33	17	1	46	1.59
14547532--14547587	3	18.7	3	92	0	94	35	30	1	32	1.68
14547586--14547613	3	9.3	3	100	0	56	35	0	0	64	0.94
14547730--14548341	219	2.8	218	80	7	597	51	5	10	32	1.59
14547730--14548628	219	4.2	214	76	11	582	51	5	10	32	1.60
14548502--14548552	20	2.6	21	81	12	63	64	5	0	29	1.17
14549567--14549604	20	1.9	20	88	0	58	34	7	10	47	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14550256--14550296	20	2.0	20	85	4	55	26	17	17	39	1.91
14551276--14551328	26	1.9	28	85	11	74	54	3	9	32	1.50
14554251--14554292	23	1.9	23	85	9	61	61	7	14	16	1.53
14557976--14558097	64	1.9	64	83	6	158	45	6	9	39	1.62
14558202--14558231	14	2.1	14	93	0	51	50	26	0	23	1.50
14560075--14560112	19	2.0	19	85	10	51	21	18	7	52	1.70
14563022--14563069	23	2.0	24	92	4	80	60	0	39	0	0.97
14563971--14564063	48	2.0	47	84	2	123	53	4	11	30	1.56
14566184--14566309	36	3.5	34	77	12	121	30	4	32	31	1.79
14566184--14566281	33	2.9	32	83	7	115	30	5	30	33	1.79
14566184--14566310	18	7.1	18	70	13	109	30	4	32	32	1.78
14566656--14566697	3	14.0	3	80	9	50	33	38	0	28	1.58
14566656--14566697	12	3.5	12	83	0	57	33	38	0	28	1.58
14578447--14578508	10	6.4	10	83	7	65	56	11	25	6	1.58
14580583--14580649	27	2.5	26	75	15	66	20	1	4	73	1.09
14580642--14580742	3	30.7	3	75	13	76	30	4	1	62	1.27
14580628--14580790	12	13.7	12	68	24	62	29	4	1	64	1.23
14580645--14580739	26	3.4	27	74	17	86	30	5	2	62	1.29
14580704--14580767	23	2.8	23	85	4	85	34	3	1	60	1.22
14580643--14580742	29	3.6	28	81	6	98	31	5	2	62	1.28
14580706--14580764	20	2.9	20	80	10	66	33	3	1	61	1.23
14581312--14581359	16	2.9	16	73	14	53	54	0	45	0	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14581466--14581498	11	2.8	12	90	4	50	18	30	36	15	1.91
14581630--14581759	3	42.7	3	74	11	113	27	0	3	68	1.10
14581785--14581937	58	2.7	57	90	4	238	43	6	11	38	1.67
14585167--14585222	27	2.1	27	89	0	85	83	1	10	3	0.83
14585144--14585222	12	6.2	12	74	18	70	82	2	10	5	0.92
14585174--14585243	32	2.2	31	82	10	79	80	1	14	4	0.94
14586243--14586500	41	6.1	41	78	7	216	25	15	21	37	1.92
14586243--14586500	82	3.1	83	82	6	245	25	15	21	37	1.92
14586423--14586543	45	2.7	45	83	2	120	24	17	19	38	1.93
14586821--14586955	4	34.8	4	72	11	52	30	3	1	64	1.20
14586823--14586882	28	2.1	28	84	6	77	31	1	0	66	1.01
14586821--14586914	35	2.7	34	81	5	98	29	4	1	64	1.19
14587787--14587838	3	17.0	3	84	11	70	34	1	0	63	1.06
14587864--14587930	18	3.5	17	76	23	55	16	5	0	77	0.95
14587850--14587935	46	1.9	46	84	13	117	17	6	0	75	1.01
14587856--14587930	5	14.4	5	78	13	64	17	5	0	77	0.95
14587948--14588100	58	2.7	57	92	2	245	45	5	11	37	1.64
14591039--14591076	17	2.2	17	86	9	51	81	2	15	0	0.80
14593479--14593510	2	16.0	2	100	0	64	50	0	0	50	1.00
14593729--14593784	28	2.0	28	96	0	103	50	5	16	28	1.67
14594386--14594430	16	2.6	17	83	16	58	8	8	4	77	1.10
14596800--14596843	9	4.6	9	81	13	52	11	4	2	81	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14596788--14596842	19	2.9	18	78	17	58	14	3	1	80	0.94
14597739--14597801	7	8.9	7	75	18	51	12	4	1	80	0.93
14597744--14597831	37	2.5	36	83	9	110	12	4	3	79	1.01
14597846--14598243	60	6.7	59	85	5	461	43	7	13	34	1.73
14598092--14598186	30	3.1	30	61	8	75	36	4	16	42	1.68
14604064--14604114	18	2.8	18	90	0	84	31	11	5	50	1.62
14604968--14605019	26	2.0	26	84	0	68	51	13	7	26	1.67
14606837--14606862	2	13.0	2	100	0	52	50	0	0	50	1.00
14608323--14608375	16	3.3	16	70	19	56	43	1	11	43	1.51
14612649--14612679	2	16.0	2	93	6	55	51	0	0	48	1.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121