genome.fa.s79.2.7.7.80.10.50.1000.29.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167904.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_17, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  21107920

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   

This is table  29  of  121  ( 14423 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5039495--5039521	4	6.8	4	100	0	54	22	0	0	77	0.76
5041972--5042007	16	2.4	16	90	9	58	86	8	2	2	0.77
5042037--5042079	20	2.2	19	83	8	50	74	13	4	6	1.19
5043024--5043053	3	10.0	3	100	0	60	66	0	0	33	0.92
5043959--5044211	130	1.9	129	92	3	418	37	6	19	35	1.78
5046194--5046250	29	2.0	29	96	0	105	56	1	1	40	1.20
5046687--5046747	26	2.4	26	89	8	90	50	1	1	45	1.21
5046866--5046986	15	8.0	15	74	14	106	44	0	0	53	1.12
5046849--5046981	23	5.8	23	70	19	100	44	0	0	54	1.11
5046866--5046943	31	2.6	29	82	10	61	42	0	1	56	1.07
5047096--5047143	22	2.2	22	85	3	62	35	10	4	50	1.56
5048924--5048949	2	13.0	2	100	0	52	50	0	0	50	1.00
5049244--5049293	3	16.7	3	100	0	100	66	0	0	34	0.92
5049571--5049605	17	2.1	17	94	0	61	37	2	11	48	1.54
5055068--5055100	11	3.0	11	95	0	57	27	42	9	21	1.83
5058070--5058489	60	7.0	59	86	9	523	46	8	12	33	1.71
5058070--5058479	121	3.4	116	87	7	558	46	7	12	33	1.71
5058079--5058479	181	2.2	180	89	4	621	45	7	12	33	1.70
5063541--5064475	41	23.0	42	88	8	1354	22	18	21	37	1.94
5063541--5064475	81	11.5	81	90	5	1314	22	18	21	37	1.94
5064482--5064552	1	71.0	1	78	0	52	85	7	0	7	0.73
5064482--5064546	9	6.7	9	78	19	60	86	7	0	6	0.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5064484--5064552	16	4.3	16	76	12	61	85	7	0	7	0.74
5064493--5064553	31	1.9	32	90	3	97	83	6	0	9	0.80
5065334--5065400	31	2.2	31	81	10	75	29	23	19	26	1.98
5065446--5065490	20	2.3	20	92	3	74	26	26	22	24	2.00
5065939--5066219	60	4.7	59	88	5	392	44	8	13	33	1.74
5065931--5066219	121	2.4	116	89	6	420	44	8	12	33	1.74
5068132--5068211	3	26.7	3	75	5	72	63	1	6	28	1.26
5068134--5068211	18	4.5	18	77	9	90	62	1	6	29	1.28
5068534--5068767	55	4.2	55	71	11	183	41	14	22	21	1.89
5080762--5080847	45	1.9	45	85	4	120	32	13	18	34	1.90
5080996--5081035	18	2.2	18	86	0	53	62	5	2	30	1.29
5081330--5081512	97	1.9	97	90	2	296	37	21	13	27	1.91
5083850--5083892	22	2.0	21	82	13	52	53	0	16	30	1.43
5084384--5084426	22	2.0	22	82	13	54	27	4	16	51	1.64
5087507--5087541	16	2.2	16	89	0	52	31	14	14	40	1.86
5089081--5089136	21	2.7	21	100	0	112	28	26	23	21	1.99
5091397--5091439	20	2.2	20	83	8	52	72	6	0	20	1.08
5094543--5094567	2	12.5	2	100	0	50	48	0	0	52	1.00
5094617--5094865	130	1.9	129	90	2	403	38	5	19	36	1.75
5095394--5095418	12	2.1	12	100	0	50	48	8	8	36	1.62
5103650--5103683	16	2.1	16	94	0	59	73	0	0	26	0.83
5104857--5104893	19	1.9	19	100	0	74	81	0	5	13	0.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5104841--5104884	14	3.1	14	87	9	54	77	0	4	18	0.94
5105685--5105785	6	16.8	6	79	11	55	52	2	12	31	1.54
5105683--5105782	9	10.8	9	77	13	60	53	3	13	31	1.54
5105688--5105731	3	14.7	3	85	0	52	38	4	27	29	1.76
5105688--5105731	15	2.9	15	86	0	61	38	4	27	29	1.76
5105730--5105786	3	19.0	3	86	13	82	63	1	1	33	1.15
5105732--5105786	14	3.9	14	90	0	92	63	1	1	32	1.15
5105730--5105786	17	3.4	17	85	4	80	63	1	1	33	1.15
5111369--5111407	19	2.1	19	100	0	78	28	10	20	41	1.85
5118515--5118667	3	52.3	3	79	12	167	62	3	2	32	1.25
5118886--5118925	21	1.9	21	85	10	55	5	5	25	65	1.34
5120099--5120143	3	15.0	3	100	0	90	33	0	0	66	0.92
5122710--5122779	7	9.4	7	73	11	50	20	0	32	47	1.50
5123984--5124028	22	2.0	22	91	0	72	33	2	15	48	1.57
5124567--5124743	31	5.7	31	75	7	139	36	16	19	27	1.93
5133311--5133428	45	2.6	44	80	6	121	37	28	1	32	1.67
5133931--5133964	16	2.1	16	100	0	68	76	0	0	23	0.79
5133993--5134027	14	2.6	14	86	13	56	37	0	0	62	0.95
5135121--5135162	16	2.9	15	83	13	52	64	7	2	26	1.32
5135969--5136006	15	2.5	15	91	0	58	42	7	23	26	1.81
5136002--5136074	3	24.0	3	91	8	121	64	1	1	32	1.11
5136245--5136384	55	2.5	55	76	2	147	45	16	18	19	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5146972--5147019	20	2.5	18	83	10	51	70	2	20	6	1.19
5148782--5148904	3	42.3	3	74	15	107	60	4	3	31	1.31
5148785--5148851	5	12.2	5	86	10	71	61	2	1	34	1.20
5148785--5148854	29	2.6	27	86	10	106	61	2	1	34	1.20
5148782--5148907	34	3.7	33	80	13	130	61	3	3	31	1.30
5149656--5149717	18	3.2	20	77	13	67	58	0	1	40	1.08
5150370--5150447	3	26.0	3	94	0	138	32	1	1	65	1.09
5153011--5153069	26	2.4	23	83	13	66	18	0	33	47	1.49
5153034--5153106	23	3.5	21	78	10	69	27	1	26	45	1.62
5154098--5154136	12	3.2	12	85	14	53	2	17	0	79	0.84
5154913--5155055	31	4.6	31	79	3	128	36	16	20	26	1.94
5155374--5155414	11	3.7	11	86	0	55	21	0	29	48	1.50
5155373--5155419	22	2.1	22	88	0	67	27	0	27	44	1.55
5156015--5156398	194	2.0	194	97	1	734	35	18	11	34	1.87
5158089--5158609	264	2.0	259	81	6	604	39	14	11	34	1.81
5168475--5168511	14	2.8	13	88	8	56	86	0	10	2	0.67
5168874--5168914	18	2.3	18	86	0	55	75	0	14	9	1.04
5170128--5170451	25	13.6	25	74	12	225	39	9	12	37	1.77
5170128--5170427	46	6.4	46	81	4	341	39	9	13	37	1.77
5170105--5170261	71	2.3	71	80	4	169	38	10	13	37	1.78
5170409--5170468	28	2.1	28	81	6	68	38	11	20	30	1.88
5171031--5171206	41	4.3	41	83	1	190	23	12	20	43	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5171395--5171421	8	3.4	8	100	0	54	66	0	22	11	1.22
5173216--5173323	57	1.9	57	84	7	148	53	8	11	26	1.64
5173228--5173317	28	3.2	27	67	14	65	48	10	10	31	1.69
5175745--5175789	18	2.5	17	83	16	56	37	2	0	60	1.09
5175823--5175859	12	3.1	12	100	0	74	27	16	40	16	1.89
5175823--5175857	18	1.9	18	88	0	52	22	17	42	17	1.88
5177500--5177550	13	3.7	14	78	21	63	33	0	0	66	0.92
5184814--5184839	6	4.3	6	100	0	52	15	0	0	84	0.62
5191619--5191653	18	1.9	18	88	0	52	62	0	0	37	0.95
5194987--5195011	12	2.1	12	100	0	50	8	8	0	84	0.79
5199543--5199574	15	2.2	15	94	5	57	28	0	6	65	1.16
5200938--5200996	29	2.0	29	80	6	66	50	8	0	40	1.33
5200942--5201024	39	2.1	38	82	10	96	51	7	0	40	1.29
5201690--5201736	19	2.4	19	86	13	60	46	2	0	51	1.13
5202863--5202953	40	2.3	38	79	7	94	30	1	5	62	1.25
5203203--5203248	10	4.5	10	84	12	58	39	0	8	52	1.33
5203645--5203684	21	1.9	21	89	0	62	65	2	0	32	1.06
5203645--5203695	21	2.4	21	83	0	57	60	1	1	35	1.19
5203732--5203768	17	2.2	17	90	0	56	67	2	0	29	1.04
5203887--5203926	21	1.9	21	89	0	62	57	5	0	37	1.21
5204000--5204029	9	3.3	9	95	0	51	13	6	0	80	0.91
5205682--5205752	12	5.8	12	79	12	74	38	0	0	61	0.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5205718--5205754	8	4.6	8	86	0	56	43	0	0	56	0.99
5205718--5205772	16	3.6	16	80	11	62	47	0	0	52	1.00
5210750--5210783	11	2.9	12	82	8	52	17	14	5	61	1.52
5212769--5212806	3	12.7	3	100	0	76	0	34	31	34	1.58
5223083--5223142	22	2.5	25	81	10	72	48	0	0	51	1.00
5223663--5223732	22	3.3	21	78	4	70	51	0	0	48	1.00
5224360--5224393	18	1.9	18	88	5	52	44	2	0	52	1.16
5224474--5224590	38	3.1	38	67	14	96	47	3	2	47	1.33
5224453--5224607	75	2.1	76	84	8	201	47	3	3	45	1.37
5224621--5224669	19	2.5	20	83	6	73	36	6	2	55	1.37

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121