genome.fa.s79.2.7.7.80.10.50.1000.50.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167904.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_17, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  21107920

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   

This is table  50  of  121  ( 14423 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8851620--8851698	25	3.2	25	92	0	122	21	3	27	46	1.68
8851620--8851726	25	4.3	25	82	4	119	22	4	27	45	1.72
8854770--8854874	36	3.0	35	90	2	156	33	12	14	40	1.83
8874820--8874927	45	2.4	45	81	3	119	22	33	17	26	1.96
8877861--8877902	19	2.3	19	84	8	52	21	4	14	59	1.53
8911972--8912019	23	2.1	23	88	0	69	31	16	31	20	1.95
8912019--8912144	45	2.8	45	82	2	137	22	29	20	27	1.98
8919640--8920085	224	2.0	223	86	1	624	24	20	22	32	1.98
8923118--8923234	45	2.6	45	76	0	108	26	28	17	28	1.97
8930696--8930757	29	2.1	29	90	0	97	19	4	56	19	1.59
8930781--8930831	19	2.6	18	79	14	57	11	0	13	74	1.07
8931136--8931517	50	7.8	49	78	7	294	38	21	12	27	1.90
8931090--8931517	99	4.3	97	78	8	332	37	21	12	28	1.90
8931101--8931513	198	2.1	199	82	6	491	37	21	13	28	1.91
8932280--8932315	18	2.0	18	89	10	56	8	13	0	77	0.98
8933295--8933332	18	2.1	19	90	5	60	31	23	7	36	1.84
8938910--8939019	55	2.0	55	100	0	220	29	9	21	40	1.84
8943140--8943178	18	2.1	18	85	9	51	46	2	5	46	1.38
8943808--8943845	13	2.9	13	92	0	58	15	7	0	76	1.01
8944681--8944713	12	2.8	12	90	0	57	6	0	9	84	0.76
8945033--8945075	19	2.3	19	84	4	61	13	0	9	76	1.01
8945030--8945093	29	2.2	28	83	5	83	15	1	7	75	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8956786--8956890	45	2.3	44	78	12	106	25	26	20	26	1.99
8971718--8971822	45	2.4	44	80	4	104	23	26	21	27	1.99
8979699--8979729	12	2.6	12	100	0	62	19	6	32	41	1.77
8986285--8986393	44	2.4	45	86	1	139	28	31	14	25	1.95
8989394--8989467	34	2.1	35	85	5	105	35	10	25	28	1.90
9006273--9006368	47	2.0	47	87	0	138	18	19	25	36	1.95
9018347--9018398	19	2.8	18	79	2	59	34	15	28	21	1.94
9020161--9020206	24	1.9	24	86	0	65	36	36	21	4	1.74
9038193--9038242	18	2.8	18	96	0	91	22	34	10	34	1.87
9046585--9046618	17	2.0	17	94	0	59	38	11	32	17	1.86
9058893--9059659	385	2.0	385	88	1	1142	28	24	25	21	1.99
9059433--9060361	471	2.0	470	84	2	1204	21	32	20	26	1.98
9059944--9060875	371	2.5	371	85	0	1229	20	30	21	27	1.98
9069802--9069899	45	2.2	45	86	0	133	27	30	16	25	1.96
9069823--9069933	45	2.5	45	81	0	123	24	32	18	25	1.97
9071667--9071720	21	2.6	21	82	5	65	22	20	38	18	1.93
9083528--9083626	18	5.6	18	71	13	53	41	11	11	36	1.76
9083567--9083743	68	2.5	68	80	3	183	33	15	15	35	1.89
9083803--9083926	35	3.6	34	72	8	79	42	12	11	33	1.79
9083803--9083877	17	4.3	17	73	6	69	42	13	12	32	1.80
9083803--9084019	17	12.4	17	67	8	58	43	11	12	31	1.79
9083803--9084018	53	4.1	53	74	1	173	43	12	12	31	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9083850--9084023	36	4.9	36	68	7	97	44	10	12	31	1.77
9084149--9084336	45	4.2	45	76	11	147	41	13	8	36	1.75
9085779--9085828	13	3.9	13	77	15	50	4	20	0	76	0.95
9088297--9088336	16	2.5	16	91	0	62	70	2	5	22	1.19
9088750--9088791	22	1.9	22	85	9	59	80	2	4	11	0.95
9089734--9089783	24	2.1	23	85	10	66	70	0	2	28	0.99
9090548--9090573	7	3.7	7	100	0	52	30	0	15	53	1.42
9098415--9098445	9	3.6	9	95	4	55	48	0	0	51	1.00
9098656--9098701	14	2.9	16	81	18	53	47	0	2	50	1.13
9098616--9098761	12	12.2	12	69	21	60	50	0	2	47	1.15
9098756--9099687	181	5.2	179	76	8	743	40	8	9	41	1.66
9098770--9099698	355	2.6	358	80	5	921	40	7	9	42	1.66
9100415--9100448	10	3.3	10	88	8	50	52	0	0	47	1.00
9100409--9100459	21	2.5	20	76	17	50	50	0	0	49	1.00
9100612--9100654	14	3.0	14	79	3	50	44	0	2	53	1.13
9100609--9100738	62	2.1	62	97	1	244	40	1	7	50	1.40
9100636--9100740	33	3.3	33	70	15	112	40	1	8	49	1.44
9100844--9100923	24	3.3	24	70	16	65	47	2	1	48	1.23
9101553--9101655	32	3.2	31	71	17	77	45	4	1	47	1.35
9102643--9102717	36	2.1	36	82	9	91	50	4	1	44	1.29
9102853--9105051	181	12.2	175	75	9	1376	40	8	9	41	1.69
9102853--9105041	362	6.1	358	75	8	1648	40	8	9	41	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9105317--9105373	23	2.4	23	77	16	64	38	1	1	57	1.19
9105066--9105661	182	3.3	176	77	9	553	41	7	10	40	1.68
9106235--9106316	44	1.9	42	85	9	112	46	1	3	48	1.27
9106245--9106337	42	2.2	43	82	7	109	48	1	2	48	1.20
9107640--9107747	14	7.2	16	68	23	58	52	0	0	46	1.06
9107643--9107730	25	3.5	25	73	14	67	51	0	1	47	1.08
9107691--9107746	17	3.2	18	82	10	71	53	0	0	46	1.00
9107781--9107847	19	3.7	17	75	14	64	50	1	1	46	1.19
9107950--9108020	3	23.7	3	73	11	56	39	0	2	57	1.13
9107953--9108020	30	2.3	30	82	5	84	39	0	2	57	1.14
9108037--9108154	4	29.8	4	66	28	58	47	0	0	50	1.12
9108037--9108079	14	3.2	13	87	12	61	51	2	0	46	1.13
9107983--9108108	22	6.0	21	74	17	77	46	1	0	51	1.16
9108064--9108133	18	3.8	19	72	23	69	45	0	0	54	0.99
9108060--9108138	23	3.3	24	74	13	74	45	0	0	54	0.99
9108393--9108425	10	3.2	11	87	12	52	51	0	0	48	1.00
9108485--9108569	27	3.2	25	75	18	75	51	3	2	42	1.31
9108769--9108806	13	2.8	13	81	18	51	47	0	5	47	1.24
9108756--9108820	25	2.5	27	85	9	82	47	0	6	46	1.27
9108940--9108966	11	2.5	11	100	0	54	62	0	7	29	1.22
9109305--9109381	24	3.0	25	78	12	75	48	2	1	48	1.23
9109316--9109398	27	3.2	27	79	15	86	44	2	2	50	1.28
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9110126--9110201	32	2.4	31	81	16	86	48	1	0	50	1.09
9110143--9110198	25	2.1	29	83	12	75	46	1	0	51	1.11
9110619--9110746	28	4.5	28	71	15	75	46	0	1	50	1.16
9110645--9110688	19	2.4	19	84	3	54	40	2	0	56	1.11
9110977--9111027	21	2.4	22	75	15	54	50	3	3	41	1.39
9112535--9112651	37	3.1	37	71	23	100	49	0	0	48	1.12
9112658--9112705	25	1.9	25	86	0	69	54	4	4	37	1.39
9112739--9112774	14	2.6	15	83	16	51	41	0	0	58	0.98
9112821--9113159	176	1.9	177	83	6	438	40	11	7	40	1.70
9113261--9113308	23	2.1	22	88	3	69	56	2	0	41	1.11
9113457--9113527	18	3.9	18	78	9	65	46	2	1	49	1.25
9113476--9113527	19	2.9	18	85	5	61	42	3	1	51	1.31
9113652--9113713	17	3.9	17	70	21	53	40	1	1	56	1.19
9113785--9113827	20	2.0	22	86	8	63	41	2	4	51	1.35
9114041--9114081	20	2.1	20	86	4	57	51	2	0	46	1.14
9114101--9114156	17	3.5	16	80	14	62	51	0	3	44	1.18
9114115--9114141	14	1.9	14	100	0	54	55	0	7	37	1.28
9114507--9114559	21	2.5	21	79	17	56	54	1	0	43	1.11
9114544--9114590	25	1.9	24	83	12	60	44	0	4	51	1.21
9114569--9114626	27	2.1	27	84	6	73	43	3	1	51	1.28
9114639--9114709	34	2.1	34	84	10	92	57	0	1	40	1.07
9115066--9115104	10	3.7	10	83	10	51	53	0	0	46	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9116212--9116262	20	2.5	20	75	12	52	43	1	0	54	1.11
9117261--9117343	36	2.3	37	81	6	91	44	1	4	49	1.31
9117377--9117420	12	3.5	14	77	22	53	47	0	0	52	1.00
9117380--9117418	11	3.5	11	82	6	51	48	0	0	51	1.00
9118524--9118565	20	2.1	20	86	8	59	52	2	0	45	1.13
9118740--9118888	42	3.4	42	75	12	115	46	0	2	50	1.20
9119023--9119055	17	2.0	17	88	5	50	36	9	0	54	1.32
9119859--9119922	26	2.4	26	84	7	85	54	0	3	42	1.16
9120109--9120142	16	2.1	16	88	0	50	50	0	0	50	1.00
9120114--9120188	34	2.2	34	86	9	100	48	0	2	49	1.15

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121