genome.fa.s79.2.7.7.80.10.50.1000.19.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167904.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_17, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  21107920

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   

This is table  19  of  121  ( 14423 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3416463--3417460	264	3.7	262	84	4	1026	31	47	4	17	1.66
3417156--3417361	66	3.3	66	65	20	179	32	47	2	17	1.63
3417168--3417261	30	2.8	35	76	14	90	34	44	2	19	1.62
3417199--3417268	30	2.3	30	95	0	131	32	48	2	15	1.60
3417262--3417452	90	2.2	86	88	2	247	30	49	3	16	1.61
3417403--3417494	39	2.4	39	83	0	103	29	51	2	17	1.57
3417431--3417655	66	3.4	66	81	3	263	31	46	2	20	1.64
3417767--3418088	96	3.4	96	73	7	303	25	50	2	22	1.61
3418104--3418225	45	2.6	45	83	6	138	22	50	5	21	1.69
3417624--3418230	48	12.7	47	71	7	201	27	48	4	19	1.68
3418142--3418300	72	2.2	73	81	3	185	25	49	4	20	1.68
3418194--3418252	27	2.2	27	90	0	91	28	49	3	18	1.64
3418215--3418348	48	2.8	47	81	9	146	26	50	2	20	1.59
3418194--3418352	27	6.3	27	68	16	81	27	49	2	20	1.61
3418461--3418571	48	2.3	48	79	0	114	21	55	1	20	1.52
3421976--3422006	11	2.7	12	90	10	55	25	51	6	16	1.68
3422545--3422600	29	1.9	29	88	0	85	48	0	1	50	1.11
3422540--3422602	29	2.2	28	80	5	81	47	0	1	50	1.10
3423043--3423117	27	2.8	27	75	20	77	48	0	0	52	1.00
3423048--3423126	27	3.0	27	73	17	76	48	0	1	50	1.08
3431120--3431169	2	25.0	2	84	15	68	48	4	0	48	1.20
3431120--3431184	18	3.7	18	80	17	75	47	6	0	46	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3433183--3433275	26	3.5	26	70	13	91	47	7	2	43	1.43
3435441--3435484	11	3.8	11	82	11	61	27	0	0	72	0.85
3435424--3435482	24	2.5	24	88	0	82	32	0	0	67	0.91
3444093--3444322	33	7.2	33	73	10	147	30	34	16	17	1.93
3445068--3445119	6	8.7	6	91	0	59	19	1	55	23	1.53
3445068--3445119	12	4.3	12	87	0	68	19	1	55	23	1.53
3445211--3445252	18	2.3	18	87	0	57	23	7	50	19	1.72
3448053--3448087	18	1.9	18	88	0	52	45	14	17	22	1.84
3457018--3457064	24	1.9	25	83	12	62	46	8	2	42	1.46
3463786--3463820	17	2.1	17	88	0	52	77	0	0	22	0.78
3464582--3464639	30	1.9	30	96	0	107	46	24	0	29	1.53
3466401--3466440	20	2.0	20	85	9	55	67	7	10	15	1.41
3467625--3467705	20	4.1	20	88	0	108	45	13	6	34	1.69
3476549--3476914	184	2.0	185	87	0	536	26	24	30	18	1.98
3480428--3480484	30	1.9	30	85	7	80	36	1	15	45	1.57
3487286--3487316	2	15.5	2	100	0	62	48	0	0	51	1.00
3487976--3488040	20	3.2	20	89	6	96	41	10	9	38	1.72
3500548--3500584	2	18.5	2	100	0	74	51	0	48	0	1.00
3502127--3502260	69	1.9	69	92	0	223	32	17	11	38	1.86
3504422--3504467	21	2.2	21	84	3	58	19	4	4	71	1.20
3511579--3511625	25	1.9	24	83	12	60	40	6	17	36	1.75
3513014--3513058	18	2.4	19	85	3	65	51	2	0	46	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3514289--3514326	20	2.0	20	85	10	53	26	13	23	36	1.91
3518353--3518385	10	3.3	10	91	0	57	72	0	0	27	0.85
3521972--3522020	2	24.5	2	100	0	98	0	48	0	51	1.00
3522020--3522055	2	18.0	2	100	0	72	50	0	0	50	1.00
3526005--3526073	21	3.2	20	69	25	52	40	1	30	27	1.65
3526005--3526099	43	2.2	43	90	0	145	42	1	26	30	1.62
3528795--3528835	20	2.0	20	95	0	73	26	0	12	60	1.31
3534592--3534628	2	18.5	2	94	0	65	2	45	0	51	1.15
3535163--3535206	22	2.0	22	82	8	54	38	2	0	59	1.10
3535911--3535939	2	14.5	2	100	0	58	48	0	0	51	1.00
3544852--3544888	2	18.5	2	100	0	74	0	48	0	51	1.00
3544888--3544928	2	20.5	2	94	0	73	46	2	0	51	1.14
3554682--3554712	14	2.2	14	94	0	53	54	0	0	45	0.99
3555424--3555463	14	2.8	15	79	20	50	40	0	0	60	0.97
3556029--3556166	70	2.0	71	82	15	171	55	2	0	41	1.14
3556777--3556871	31	3.1	31	79	11	106	51	4	1	43	1.28
3561733--3561765	14	2.3	15	94	5	59	54	0	3	42	1.15
3561930--3561990	18	3.7	17	73	22	67	55	3	1	39	1.26
3562015--3562088	19	3.9	19	70	15	55	45	2	1	50	1.24
3564591--3564659	33	2.1	33	100	0	138	31	8	33	26	1.87
3564694--3564851	79	2.0	79	100	0	316	26	12	29	31	1.93
3566700--3566932	116	2.0	116	100	0	466	34	13	23	28	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3567431--3567557	39	3.3	39	89	2	193	44	14	27	12	1.82
3569093--3569204	18	6.4	18	68	19	67	58	1	0	39	1.15
3569114--3569186	13	5.7	12	72	18	58	54	2	1	41	1.23
3569223--3569314	16	5.5	16	71	21	64	47	2	0	50	1.13
3569279--3569349	25	2.8	24	80	16	81	49	2	0	47	1.16
3569941--3570000	26	2.3	25	81	13	77	38	0	3	58	1.15
3570542--3570582	21	1.9	22	85	5	57	48	0	0	51	1.00
3570862--3570916	27	2.1	26	82	3	65	47	3	1	47	1.30
3571739--3571799	29	2.2	27	82	5	68	65	3	1	29	1.18
3571759--3571797	19	2.0	20	90	5	62	69	0	0	30	0.89
3572758--3572786	14	2.0	15	93	6	51	58	0	0	41	0.98
3577873--3577931	30	2.0	30	96	0	109	27	11	16	44	1.83
3580322--3580352	2	16.0	2	93	6	55	48	0	0	51	1.00
3581443--3581482	17	2.4	17	91	0	71	40	0	0	60	0.97
3581596--3581642	23	2.0	22	100	0	76	51	4	8	36	1.52
3583473--3583501	14	2.1	14	93	6	51	17	27	10	44	1.81
3583732--3583797	33	2.0	33	93	0	114	22	19	7	50	1.73
3590946--3591017	33	2.2	33	100	0	144	29	8	13	48	1.72
3595786--3596035	126	2.0	126	93	0	428	19	16	22	42	1.89
3598179--3598216	14	2.5	15	87	8	51	71	0	2	26	1.00
3598193--3598239	12	4.0	12	77	5	51	68	0	0	31	0.90
3598184--3598229	23	2.0	23	91	0	74	69	0	0	30	0.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3598179--3598221	11	3.8	11	78	6	50	69	0	2	27	1.00
3599466--3599507	17	2.3	19	80	12	52	47	7	0	45	1.30
3599474--3599506	9	3.8	9	88	4	50	45	9	0	45	1.35
3599973--3600009	1	37.0	1	100	0	74	0	0	0	100	0.00
3602586--3602629	18	2.4	18	81	7	54	40	4	2	52	1.34
3606199--3606231	2	16.5	2	100	0	66	51	0	0	48	1.00
3608199--3608239	11	3.8	11	75	18	50	60	0	0	39	0.96
3612918--3612954	18	2.1	18	94	0	65	35	16	27	21	1.94
3619455--3619753	9	31.0	9	68	16	102	56	4	3	35	1.37
3619454--3619535	19	4.5	18	72	13	69	54	3	1	40	1.26
3619454--3619685	20	12.5	19	67	16	94	56	5	2	35	1.35
3619522--3619590	11	6.3	11	75	5	59	60	4	2	31	1.31
3619577--3619733	29	5.5	29	72	15	87	58	3	3	33	1.34
3619655--3619736	37	2.2	37	82	8	96	60	2	3	32	1.27
3619709--3619757	20	2.5	20	89	0	71	55	4	8	32	1.48
3622075--3622159	19	4.2	20	75	10	66	42	1	8	48	1.40
3622066--3622159	21	4.6	20	75	9	75	42	1	7	48	1.38
3622132--3622209	29	2.7	30	78	9	90	39	0	5	55	1.22
3622137--3622209	20	3.8	20	76	7	62	39	0	4	56	1.19
3622118--3622207	19	4.8	19	74	12	62	38	0	5	55	1.23
3622174--3622211	19	2.1	19	95	5	69	39	0	5	55	1.23
3623047--3623124	29	2.7	29	81	11	81	52	0	1	46	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3624485--3624523	19	2.1	19	85	0	51	41	5	2	51	1.38
3625372--3625420	17	2.9	17	82	17	59	61	2	4	32	1.26
3627179--3627211	13	2.5	13	86	13	50	51	0	0	48	1.00
3627316--3627374	30	2.0	28	84	12	75	44	3	1	50	1.28
3627768--3627810	20	2.4	17	76	23	52	34	25	0	39	1.56
3631787--3631841	19	3.0	18	71	21	51	32	0	9	58	1.30
3631787--3631865	38	2.1	38	83	4	97	35	1	7	55	1.36
3632111--3632170	22	2.8	20	78	9	66	65	3	5	26	1.29
3632349--3632425	23	3.2	24	76	12	68	53	2	6	37	1.41
3632382--3632436	23	2.4	23	82	11	60	50	0	7	41	1.30

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121