genome.fa.s79.2.7.7.80.10.50.1000.36.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167904.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_17, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  21107920

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   

This is table  36  of  121  ( 14423 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6416424--6416511	22	3.9	22	75	16	81	51	29	1	18	1.54
6416486--6416543	29	2.0	29	86	0	80	51	20	0	27	1.47
6416472--6416527	22	2.5	22	76	0	58	53	19	1	25	1.55
6418196--6418256	29	2.1	30	87	6	90	50	13	6	29	1.66
6422824--6422871	7	6.4	7	81	13	60	83	0	4	12	0.79
6422827--6422880	8	6.9	8	79	10	58	81	0	5	12	0.85
6422834--6422870	17	2.2	17	90	4	58	86	0	5	8	0.70
6423155--6423198	20	2.3	20	88	7	65	34	9	11	45	1.72
6423639--6423667	13	2.1	14	93	6	51	20	3	0	75	0.94
6423627--6423672	22	2.0	23	83	4	58	19	2	6	71	1.18
6423780--6423832	26	2.1	25	82	10	63	39	1	9	49	1.46
6423926--6423953	6	4.7	6	100	0	56	85	0	0	14	0.59
6423927--6423966	11	3.5	11	89	3	53	77	0	0	22	0.77
6428064--6428175	8	13.9	8	77	20	76	75	0	15	8	1.07
6428064--6428128	15	3.8	17	84	15	73	73	0	13	12	1.09
6428084--6428142	15	4.1	14	81	14	66	79	0	11	8	0.93
6428109--6428185	18	4.1	19	77	15	56	79	1	16	2	0.92
6428067--6428191	43	2.8	43	75	17	112	75	0	16	7	1.07
6428108--6428185	27	2.8	26	79	9	84	78	1	17	2	0.94
6428137--6428191	17	3.2	17	78	17	60	76	1	20	1	0.97
6429327--6429605	21	13.1	22	82	5	238	35	6	16	41	1.75
6429332--6429604	43	6.4	43	81	6	263	34	6	16	41	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6429855--6429898	21	2.1	21	95	0	79	36	13	18	31	1.90
6429895--6429948	20	2.7	20	75	13	65	29	9	16	44	1.79
6429986--6430022	18	2.0	19	89	5	58	51	16	5	27	1.66
6429877--6430173	151	2.0	148	92	2	495	36	11	14	37	1.82
6430382--6430707	44	7.5	44	83	5	360	26	9	15	48	1.75
6430903--6430932	7	4.3	7	100	0	60	86	0	0	13	0.57
6430906--6430950	24	1.9	23	90	4	72	84	2	2	11	0.80
6431245--6431283	19	2.0	20	90	5	62	35	10	7	46	1.67
6431750--6431813	26	2.6	24	79	16	60	20	4	1	73	1.09
6431896--6431948	25	2.1	25	82	3	61	50	1	7	39	1.41
6445396--6445435	16	2.5	16	83	0	53	40	0	5	55	1.22
6445588--6445627	18	2.2	18	86	8	55	27	0	5	67	1.11
6445586--6445636	19	2.7	19	80	20	70	29	0	3	66	1.09
6447435--6447516	34	2.4	34	76	8	85	35	9	13	41	1.77
6448347--6448374	2	14.0	2	100	0	56	50	0	0	50	1.00
6459619--6459656	20	1.9	20	88	0	58	55	2	21	21	1.56
6467672--6467712	14	2.9	14	81	0	55	7	7	4	80	1.02
6467791--6467851	5	11.0	5	75	16	50	73	3	1	21	1.06
6467791--6467850	17	3.6	16	80	12	59	73	3	1	21	1.07
6468744--6468929	3	63.0	3	75	11	116	55	4	6	33	1.45
6469765--6470046	86	3.3	86	77	3	280	37	12	18	32	1.88
6469877--6469924	18	2.7	18	90	9	73	35	20	18	25	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6471114--6471167	23	2.3	23	96	0	99	38	12	12	35	1.82
6471307--6471339	10	3.4	10	87	4	50	9	15	0	75	1.03
6471307--6471343	19	2.0	18	94	5	65	10	13	0	75	1.04
6477381--6477483	27	4.0	25	76	17	79	72	2	1	22	1.08
6477402--6477477	18	4.4	17	83	11	100	73	3	1	21	1.06
6477402--6477480	35	2.3	34	85	10	106	74	3	1	20	1.04
6478008--6478050	19	2.3	19	88	4	61	41	27	2	27	1.68
6478317--6478403	15	6.1	14	82	4	59	54	0	13	32	1.40
6478339--6478370	3	10.7	3	100	0	64	34	0	31	34	1.58
6478369--6478396	3	9.3	3	100	0	56	67	0	0	32	0.91
6478422--6478461	18	2.2	18	90	0	62	50	5	7	37	1.53
6478478--6478517	3	13.3	3	100	0	80	65	0	0	35	0.93
6479172--6479219	24	2.0	24	100	0	96	20	12	12	54	1.70
6479417--6479449	2	16.5	2	100	0	66	51	0	0	48	1.00
6481064--6481089	13	2.0	13	100	0	52	76	0	7	15	0.99
6481294--6481320	12	2.2	12	100	0	54	77	0	7	14	0.97
6481631--6481674	23	1.9	23	90	9	72	38	34	0	27	1.57
6484480--6484603	66	1.9	66	84	3	169	25	23	8	42	1.81
6484561--6484737	89	2.0	89	92	0	291	31	20	6	41	1.77
6488204--6488477	63	4.3	62	74	4	199	39	10	14	34	1.82
6495580--6495627	25	2.0	25	87	4	71	39	4	8	47	1.53
6496168--6496308	62	2.3	60	79	10	153	41	15	14	28	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6496843--6497248	63	6.5	62	70	14	221	36	15	13	33	1.87
6497439--6497608	63	2.7	63	79	6	166	41	12	13	32	1.83
6497394--6497749	188	1.9	188	80	5	416	37	14	14	33	1.87
6505508--6505652	55	2.6	55	78	1	155	50	14	8	26	1.71
6506395--6506434	18	2.2	18	90	0	62	27	0	17	55	1.43
6506559--6506591	3	11.0	3	100	0	66	66	0	0	33	0.92
6506679--6506759	41	2.0	39	83	9	101	45	7	6	40	1.57
6507208--6507258	26	2.0	26	84	0	66	45	3	9	41	1.56
6510422--6510461	18	2.2	18	95	0	71	52	17	0	30	1.45
6510701--6510818	61	1.9	61	80	13	136	39	11	15	33	1.82
6515248--6515374	68	1.9	68	89	0	200	36	5	14	44	1.68
6516196--6516341	55	2.7	55	81	2	161	48	12	8	30	1.70
6517230--6517254	12	2.1	12	100	0	50	32	8	8	52	1.60
6517298--6517397	7	14.3	7	76	8	51	46	32	0	22	1.52
6517340--6517397	21	2.8	21	74	10	64	44	29	0	25	1.54
6519482--6519518	18	2.2	18	85	9	51	40	0	5	54	1.24
6522072--6522123	14	3.7	14	76	5	52	59	3	1	34	1.27
6527117--6527148	16	2.0	16	93	0	55	71	18	0	9	1.12
6527581--6527621	12	3.2	12	89	6	55	82	0	17	0	0.66
6527587--6527620	16	2.1	17	94	5	61	88	0	11	0	0.52
6528131--6528251	34	3.6	34	79	8	113	41	17	14	27	1.87
6528179--6528251	35	2.1	34	82	2	83	43	19	10	26	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6528416--6528562	34	4.3	34	70	7	118	41	15	13	29	1.86
6528659--6528810	33	4.6	33	77	5	139	39	21	9	30	1.84
6528755--6528845	33	2.8	32	81	8	94	41	21	8	27	1.83
6531239--6531264	3	8.7	3	100	0	52	69	0	0	30	0.89
6533298--6533377	34	2.4	34	77	8	83	28	3	7	60	1.42
6533594--6533634	14	2.5	17	78	21	52	68	0	7	24	1.15
6533763--6533807	13	3.5	13	81	6	56	57	22	4	15	1.56
6533823--6533861	20	2.0	20	89	0	60	48	23	7	20	1.75
6533834--6533886	26	2.0	27	88	3	81	41	20	13	24	1.88
6533836--6533893	26	2.2	27	84	3	73	44	24	10	20	1.82
6534975--6535003	12	2.3	13	94	5	51	75	0	0	24	0.80
6539585--6539618	17	2.0	17	88	0	50	82	2	5	8	0.93
6541041--6541114	32	2.3	32	77	11	80	35	21	12	31	1.90
6541419--6541492	32	2.3	32	80	2	85	33	17	16	32	1.92
6541821--6541905	32	2.7	32	83	5	100	43	20	9	27	1.82
6541951--6542016	23	2.9	23	76	10	73	31	19	21	27	1.97
6546464--6546948	244	2.0	244	88	0	727	26	20	13	40	1.89
6547581--6549199	541	3.0	541	99	0	3163	35	10	11	41	1.77
6556851--6556899	17	2.8	18	82	14	59	73	2	2	22	1.04
6556869--6556927	27	2.2	27	81	6	66	76	1	5	16	1.05
6557282--6557325	21	2.2	21	88	8	65	36	9	4	50	1.55
6557785--6557853	3	23.0	3	85	5	68	63	5	2	27	1.31
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6557823--6557851	14	2.1	14	100	0	58	65	0	0	34	0.93
6557820--6557853	17	2.0	17	100	0	68	64	0	0	35	0.94
6557852--6557955	3	35.7	3	79	14	94	30	0	4	64	1.14
6558727--6558998	86	3.2	85	78	8	300	36	12	18	32	1.88
6558839--6558886	18	2.7	18	84	9	64	37	20	16	25	1.93
6559889--6559914	10	2.6	10	100	0	52	0	11	0	88	0.52
6566303--6566365	17	3.8	16	76	17	65	74	3	1	20	1.04
6566771--6566809	19	2.0	19	85	5	51	46	28	5	20	1.72
6567227--6567258	3	10.7	3	100	0	64	34	0	31	34	1.58
6567304--6567343	18	2.2	18	90	0	62	50	5	7	37	1.53

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121