genome.fa.s79.2.7.7.80.10.50.1000.101.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167904.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_17, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  21107920

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   

This is table  101  of  121  ( 14423 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17156889--17157081	35	5.5	35	81	3	208	28	6	13	50	1.67
17156919--17157081	69	2.3	69	88	3	236	28	7	12	50	1.67
17162984--17163098	47	2.4	48	85	4	162	28	11	18	41	1.85
17163146--17163450	38	8.1	38	81	5	298	30	12	19	38	1.88
17163132--17163450	75	4.2	75	80	3	336	30	12	19	38	1.88
17164976--17165022	20	2.3	20	88	0	67	76	4	0	19	0.95
17164987--17165017	14	2.2	14	94	0	53	77	3	0	19	0.90
17165243--17165544	43	7.0	44	79	3	301	39	20	12	27	1.89
17166011--17166206	90	2.2	91	88	0	286	34	20	9	35	1.85
17168513--17168574	32	1.9	32	90	0	97	64	11	3	20	1.40
17170018--17170212	86	2.2	88	81	2	232	37	16	10	35	1.84
17171407--17171446	18	2.1	18	90	9	62	10	12	0	77	0.99
17171408--17171453	7	6.7	7	79	20	53	10	13	0	76	1.03
17175812--17175873	32	1.9	32	93	0	106	62	8	6	22	1.45
17184809--17184872	21	3.1	20	72	14	58	48	14	4	32	1.64
17185147--17185275	54	2.4	55	85	6	172	55	10	5	28	1.55
17185240--17185378	21	6.3	20	70	19	71	53	10	3	33	1.52
17185254--17185391	24	6.0	24	74	20	134	55	9	2	31	1.46
17185244--17185371	47	2.7	47	90	7	190	54	8	2	34	1.44
17185315--17185379	21	3.2	20	84	6	85	55	9	3	32	1.47
17185198--17185391	47	4.0	47	75	17	148	55	8	3	31	1.48
17186611--17186661	23	2.3	23	80	6	61	33	11	11	43	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17186611--17186845	44	5.3	45	74	9	180	36	8	12	42	1.73
17186786--17186853	24	2.8	24	76	8	68	36	7	11	44	1.69
17186830--17187029	19	10.7	19	71	12	130	28	11	12	48	1.76
17186839--17187029	55	3.5	54	78	8	170	27	12	12	48	1.76
17186869--17187057	37	5.2	37	71	11	95	28	11	11	49	1.73
17187127--17187228	17	5.6	18	79	9	100	25	10	14	49	1.76
17187142--17187228	18	4.9	17	80	5	102	26	9	14	49	1.74
17187146--17187228	35	2.3	35	83	2	103	27	9	14	48	1.75
17191412--17191471	3	19.7	3	96	3	111	65	0	0	35	0.93
17192383--17192415	16	2.0	16	94	5	57	78	0	3	18	0.87
17193239--17193276	12	3.2	12	85	3	51	81	5	10	2	0.94
17193290--17193317	3	9.3	3	100	0	56	67	0	0	32	0.91
17193374--17193428	3	18.3	3	92	0	92	63	1	1	32	1.15
17193518--17193608	26	3.5	26	75	8	87	28	23	26	21	1.99
17193837--17194107	113	2.4	113	77	5	271	36	15	23	24	1.94
17195101--17195212	47	2.4	47	78	10	113	16	24	13	45	1.83
17201911--17202010	20	5.6	18	69	23	61	30	7	12	51	1.65
17201930--17201984	16	3.4	16	79	2	65	29	5	10	54	1.57
17201922--17201984	32	1.9	33	90	3	101	30	4	11	53	1.56
17201930--17202023	20	5.3	18	74	12	72	28	6	10	54	1.59
17202042--17202104	21	3.0	21	72	21	69	28	4	9	57	1.51
17202033--17202397	41	8.7	41	81	9	389	30	6	11	51	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17202087--17202112	12	2.2	12	100	0	52	26	7	15	50	1.71
17202046--17202153	53	2.0	53	90	0	171	28	5	12	53	1.60
17202033--17202356	135	2.5	129	82	9	330	30	5	11	51	1.62
17202099--17202403	81	3.8	81	86	3	434	30	5	11	51	1.62
17202099--17202398	41	7.4	41	87	3	408	30	6	12	51	1.63
17202033--17202403	20	18.6	20	76	15	342	30	5	11	51	1.62
17202391--17202457	32	2.1	32	88	0	98	28	2	13	55	1.53
17203176--17203224	19	2.5	20	80	6	55	14	8	8	69	1.36
17205487--17205518	15	2.1	15	94	0	55	21	9	12	56	1.64
17205666--17205696	15	2.1	15	93	0	53	19	9	12	58	1.62
17205488--17205836	178	2.0	178	93	1	601	22	20	18	37	1.94
17205843--17206029	71	2.8	62	71	14	160	40	2	8	49	1.44
17205983--17206075	27	3.6	25	69	19	66	43	2	2	52	1.25
17205982--17206086	51	2.1	51	85	0	138	41	3	1	52	1.30
17206637--17206678	17	2.5	17	80	7	50	69	0	0	30	0.89
17207101--17207130	14	2.1	14	93	0	51	76	3	6	13	1.11
17208679--17208746	29	2.4	28	80	7	82	50	2	7	39	1.46
17209890--17209990	44	2.3	45	77	6	109	36	2	10	49	1.53
17223017--17223057	15	2.6	16	85	14	59	53	0	2	43	1.13
17223141--17223197	15	3.5	15	80	15	60	42	0	1	56	1.10
17223168--17223210	15	2.9	14	78	21	52	51	0	0	48	1.00
17223136--17223216	34	2.4	33	79	8	92	49	0	1	49	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17223413--17223441	14	2.1	14	93	6	51	41	17	6	34	1.76
17223643--17223705	27	2.4	26	78	7	65	53	0	11	34	1.36
17223746--17223786	17	2.4	18	80	12	50	34	9	2	53	1.47
17224151--17224185	2	17.5	2	100	0	70	48	0	0	51	1.00
17224945--17225092	76	1.9	76	94	0	260	37	12	11	39	1.79
17227715--17227743	3	9.7	3	100	0	58	68	0	0	31	0.89
17245564--17245623	30	2.0	30	100	0	120	30	36	3	30	1.74
17246147--17246171	3	8.3	3	100	0	50	32	0	32	36	1.58
17248552--17248622	20	3.2	25	65	30	61	49	0	2	47	1.16
17248814--17248842	12	2.4	12	100	0	58	34	27	24	13	1.93
17249529--17249590	26	2.5	25	77	12	65	43	8	1	46	1.42
17254248--17254294	25	2.0	23	87	8	67	76	4	0	19	0.95
17254768--17254792	13	1.9	13	100	0	50	32	0	4	64	1.12
17256468--17256520	23	2.5	22	90	9	83	49	0	0	50	1.00
17256478--17256527	23	2.1	23	92	3	82	46	0	0	54	1.00
17256897--17256938	19	2.2	19	83	8	50	69	9	2	19	1.28
17257612--17257636	6	4.2	6	100	0	50	20	32	32	16	1.94
17263286--17263333	12	4.2	12	76	12	57	35	0	16	47	1.47
17270697--17270731	18	1.9	18	94	0	61	51	17	20	11	1.75
17273748--17273810	23	2.8	23	82	2	65	49	1	6	42	1.37
17275418--17275446	13	2.2	13	100	0	58	13	24	13	48	1.79
17276095--17276134	6	6.7	6	100	0	80	32	0	67	0	0.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17276139--17276170	9	3.6	9	100	0	64	40	0	34	25	1.56
17282592--17282633	9	4.6	9	80	16	50	33	2	0	64	1.07
17282589--17282632	20	2.3	19	92	4	70	31	2	0	65	1.05
17283844--17283885	11	3.8	11	96	0	75	52	26	0	21	1.47
17284258--17284331	14	5.1	14	75	12	60	51	6	2	39	1.43
17284521--17284591	36	2.0	36	91	5	117	46	1	22	29	1.60
17284774--17284825	26	2.0	26	82	14	63	46	5	0	48	1.26
17289888--17289938	16	3.3	17	67	32	51	54	0	0	45	0.99
17300694--17300746	20	2.5	22	84	12	74	24	16	16	41	1.89
17301545--17301605	21	2.9	21	80	2	68	49	1	0	49	1.10
17301652--17301792	19	7.3	19	70	18	71	57	6	1	34	1.33
17301652--17301840	20	9.8	20	69	15	105	57	5	1	35	1.33
17301652--17301944	9	31.1	9	65	15	96	55	4	2	37	1.32
17301653--17301783	49	2.7	49	79	8	126	58	6	0	34	1.30
17301746--17301839	48	2.0	47	85	4	125	55	4	2	38	1.31
17301664--17301840	10	18.4	10	67	16	54	57	5	1	35	1.31
17301876--17301932	19	3.0	19	76	14	55	57	0	5	36	1.21
17301763--17301944	18	9.9	18	71	14	122	56	2	3	37	1.28
17302314--17302555	10	24.6	10	71	14	112	33	1	7	57	1.37
17302315--17302379	29	2.2	29	84	10	80	36	1	9	52	1.43
17302501--17302536	17	2.1	17	100	0	72	22	0	5	72	1.05
17302538--17302639	33	3.3	30	77	14	91	34	1	7	55	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17305896--17305921	13	2.0	13	100	0	52	46	15	15	23	1.83
17306751--17307252	251	2.0	250	96	0	932	30	18	20	29	1.97
17316093--17316119	4	6.8	4	100	0	54	51	22	0	25	1.48
17316216--17316247	17	1.9	17	93	6	57	21	3	0	75	0.95
17320096--17320139	23	1.9	23	95	0	79	20	6	25	47	1.74
17321289--17321346	25	2.2	26	79	11	66	32	3	0	63	1.11
17321597--17321807	105	2.0	105	95	0	377	40	9	11	38	1.75
17325155--17325805	327	2.0	328	85	5	898	37	12	12	37	1.82
17328406--17328458	21	2.6	21	82	8	56	73	0	1	24	0.93
17328685--17329021	87	3.9	84	75	14	244	43	19	12	23	1.86

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121