genome.fa.s79.2.7.7.80.10.50.1000.51.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167904.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_17, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  21107920

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   

This is table  51  of  121  ( 14423 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9120473--9120530	14	4.2	14	73	20	50	50	0	1	48	1.11
9120813--9120837	6	4.2	6	100	0	50	68	0	0	32	0.90
9121055--9121093	16	2.4	16	86	0	60	48	2	0	48	1.15
9121080--9121105	11	2.4	11	100	0	52	42	0	0	57	0.98
9121148--9121222	28	2.5	30	81	12	82	50	1	1	46	1.18
9121175--9121220	17	2.7	17	83	6	58	52	0	0	47	1.00
9121495--9121534	21	1.9	21	84	0	53	47	5	2	45	1.38
9121707--9121739	9	3.8	9	84	8	50	45	0	0	54	0.99
9121843--9121914	19	4.1	18	74	15	60	41	0	1	56	1.07
9122062--9122114	6	9.0	6	78	17	58	49	0	1	49	1.12
9122062--9122110	17	2.9	18	79	11	59	48	0	2	48	1.12
9122072--9122157	25	3.4	25	72	18	63	46	2	2	48	1.27
9122251--9122397	26	5.6	25	70	20	88	48	0	2	48	1.18
9122287--9122413	41	3.1	41	75	16	104	48	0	2	49	1.14
9122260--9122363	53	1.9	54	83	16	135	46	0	1	50	1.18
9122293--9122410	40	2.8	41	77	14	100	48	0	2	49	1.15
9122327--9122408	22	4.0	21	72	13	64	50	0	2	47	1.14
9122752--9122789	15	2.4	16	95	4	69	55	0	0	44	0.99
9122897--9122939	23	1.9	22	81	13	52	48	0	6	44	1.29
9123019--9123064	14	2.9	16	81	18	53	47	0	2	50	1.13
9122979--9123124	12	12.2	12	68	21	51	49	0	3	47	1.18
9123119--9124046	182	5.2	179	76	8	794	39	8	9	42	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9124784--9124817	10	3.3	10	88	8	50	52	0	0	47	1.00
9124778--9124856	28	2.9	25	77	18	86	50	1	0	48	1.08
9124778--9124828	21	2.5	20	76	17	50	50	0	0	49	1.00
9125260--9125302	13	3.2	13	80	3	50	58	2	0	39	1.11
9125460--9125497	19	2.1	19	90	9	62	44	0	0	55	0.99
9126021--9126117	30	3.0	34	73	14	89	47	2	2	48	1.25
9126278--9126354	29	2.9	25	75	22	68	46	2	0	50	1.15
9126330--9126383	17	3.2	17	74	10	58	42	0	3	53	1.18
9126841--9126884	13	3.2	13	83	6	52	47	0	11	40	1.39
9127038--9127090	19	3.0	18	81	10	56	47	0	1	50	1.12
9127064--9127100	15	2.3	17	86	9	51	48	0	0	51	1.00
9127301--9130201	181	16.2	180	75	9	2112	40	7	9	41	1.67
9127301--9130201	542	5.4	539	77	7	2075	40	7	9	41	1.67
9130322--9130368	17	2.7	17	78	15	60	59	0	0	40	0.97
9130796--9130906	42	2.6	43	76	12	102	49	1	0	47	1.18
9130816--9130894	37	2.1	37	82	13	92	51	2	0	45	1.14
9130830--9130896	19	3.7	19	69	16	54	53	2	0	43	1.16
9131328--9131658	181	1.8	181	85	3	470	39	7	10	41	1.68
9131807--9131855	18	2.7	19	75	12	50	44	0	0	55	0.99
9132148--9132244	14	6.7	14	70	21	67	50	2	0	47	1.12
9132171--9132237	25	2.7	25	76	17	68	52	1	0	46	1.09
9132189--9132239	20	2.8	18	75	13	50	50	1	0	47	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9132193--9132250	17	3.3	18	83	9	75	51	1	0	46	1.11
9132153--9132358	14	15.4	13	63	24	56	50	2	0	46	1.18
9132316--9132358	12	3.6	12	79	20	54	51	0	0	48	1.00
9132464--9132518	23	2.3	25	84	6	69	40	0	1	58	1.09
9132445--9132474	3	10.0	3	100	0	60	33	0	0	66	0.92
9132674--9132745	17	4.2	17	75	15	76	70	15	1	12	1.23
9132674--9132746	18	4.2	18	76	16	82	71	15	1	12	1.22
9133112--9133160	21	2.5	20	83	6	55	69	8	10	12	1.37
9134288--9134330	21	2.0	21	82	8	52	27	18	16	37	1.92
9141803--9141855	14	3.5	15	82	15	65	13	26	1	58	1.45
9144117--9144159	8	5.4	8	83	8	52	86	0	9	4	0.71
9144117--9144151	17	2.1	17	89	10	54	85	0	11	2	0.69
9144887--9145674	48	15.8	49	76	12	590	28	13	22	35	1.92
9144886--9145674	97	7.9	96	78	11	606	28	13	22	35	1.92
9145347--9145392	22	2.1	22	91	0	74	30	15	30	23	1.95
9145247--9145471	118	1.9	122	87	5	343	26	14	24	34	1.94
9145380--9145668	149	2.0	143	84	5	373	29	11	23	35	1.90
9145811--9145853	13	3.4	12	78	12	50	79	9	4	6	1.06
9146181--9146227	18	2.6	18	86	3	58	70	8	8	12	1.34
9147058--9147105	19	2.6	18	70	9	51	62	0	6	31	1.20
9148175--9148225	24	2.1	24	86	13	70	47	0	1	50	1.12
9148437--9148490	19	2.8	19	78	16	58	61	1	1	35	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9148448--9148512	28	2.4	28	85	10	82	58	1	3	36	1.23
9148500--9148565	27	2.7	23	72	20	62	53	0	3	43	1.16
9148492--9148565	25	2.9	25	77	18	73	52	0	2	44	1.15
9148451--9148556	35	3.0	35	77	15	103	56	0	1	40	1.16
9148512--9148566	20	2.8	20	80	5	58	54	0	1	43	1.10
9148533--9148576	13	3.5	13	85	14	56	47	2	4	45	1.35
9148503--9148581	25	3.1	25	80	14	74	50	1	3	44	1.28
9148659--9148719	12	5.0	12	73	23	56	44	0	1	54	1.10
9148804--9148845	23	2.0	22	86	13	61	50	2	0	47	1.14
9149085--9149127	22	2.0	21	90	4	68	46	4	0	48	1.22
9149218--9149306	25	3.5	25	75	20	78	44	2	3	49	1.31
9150307--9150355	24	1.9	24	84	12	62	48	2	2	46	1.25
9150460--9150510	15	3.3	15	76	13	50	49	0	0	50	1.00
9150616--9150655	18	2.2	18	86	8	55	60	2	0	37	1.11
9150683--9150738	21	2.7	21	81	10	71	57	1	0	41	1.09
9150678--9150746	21	3.3	20	75	16	61	57	1	0	40	1.07
9150664--9150789	57	2.2	55	80	6	137	51	1	0	46	1.16
9150872--9150920	18	2.6	20	82	17	61	55	0	2	42	1.11
9150865--9150986	19	5.8	22	70	22	68	50	0	1	48	1.10
9152014--9152070	19	3.2	18	78	14	64	54	0	0	45	0.99
9152535--9152583	13	3.7	13	78	10	55	51	0	0	48	1.00
9152643--9152684	21	2.0	22	86	13	61	54	0	0	45	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9152842--9153944	179	6.1	179	80	6	1013	39	9	8	42	1.68
9154044--9154091	15	3.0	15	73	26	53	56	0	6	37	1.25
9154445--9154489	22	2.0	22	91	0	72	48	2	0	48	1.13
9155019--9155082	16	3.9	17	72	10	53	48	3	0	48	1.17
9155480--9155528	19	2.5	19	83	3	62	34	14	6	44	1.70
9155626--9155658	18	1.9	17	88	11	50	39	6	6	48	1.53
9156311--9156356	19	2.3	20	82	14	60	45	0	4	50	1.21
9156390--9156441	16	3.0	16	70	20	50	38	0	3	57	1.17
9157099--9157133	18	1.9	18	94	0	61	54	0	0	45	0.99
9157101--9157176	25	3.1	25	79	9	77	52	3	0	43	1.19
9157114--9157160	13	3.6	14	78	18	57	51	4	0	44	1.21
9157092--9157182	47	2.0	44	81	12	103	53	4	0	41	1.21
9157251--9157286	18	1.9	19	88	5	56	55	2	2	38	1.29
9157861--9157911	14	3.6	14	76	7	50	50	0	5	43	1.26
9157921--9157963	22	2.0	21	86	4	59	55	2	2	39	1.25
9158176--9158221	16	2.7	16	86	10	56	47	0	2	50	1.13
9158385--9158434	21	2.4	21	83	6	57	52	0	0	48	1.00
9159228--9159335	19	5.9	18	73	20	73	49	1	0	49	1.11
9159220--9159306	38	2.3	37	80	11	88	50	0	0	49	1.00
9159236--9159313	16	5.0	16	73	22	60	48	0	0	51	1.00
9159206--9159287	29	2.9	28	73	21	73	48	0	1	50	1.08
9159259--9159322	16	4.1	15	76	13	58	51	1	0	46	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9159216--9159367	82	1.9	80	81	12	184	48	2	0	48	1.20
9159222--9159394	73	2.5	66	76	16	170	47	2	0	49	1.18
9159362--9159404	17	2.3	20	84	15	65	51	0	0	48	1.00
9159571--9159921	175	2.0	177	81	7	410	43	9	6	40	1.64
9160262--9160286	13	1.9	13	100	0	50	40	4	0	56	1.18
9160334--9160367	17	1.9	18	88	5	52	58	0	0	41	0.98
9160663--9160706	15	2.8	16	80	19	56	56	0	4	38	1.20
9160661--9160709	23	2.2	22	82	10	55	55	0	4	40	1.19
9161507--9161570	29	2.3	27	79	10	74	45	3	0	51	1.17
9161521--9161571	20	2.5	20	75	12	52	43	1	0	54	1.11

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121