genome.fa.s79.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167904.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_17, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  21107920

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   

This is table  4  of  121  ( 14423 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
313737--313783	19	2.6	18	86	6	60	74	0	19	6	1.03
314606--314649	23	1.9	23	90	0	70	45	4	22	27	1.72
315004--315171	79	2.1	80	88	1	248	38	9	18	33	1.83
315084--315200	59	2.0	59	87	0	171	36	10	19	33	1.86
315281--315327	22	2.1	23	88	4	69	36	17	14	31	1.90
315441--315477	20	1.9	20	88	5	58	24	2	10	62	1.41
315988--316019	10	3.1	10	95	4	55	78	0	0	21	0.76
316568--316782	113	1.9	113	87	5	319	53	7	13	26	1.66
317717--319497	181	9.9	181	76	6	1287	40	8	9	41	1.67
319070--319124	18	3.1	18	70	21	53	41	5	16	36	1.71
317519--319497	543	3.7	534	76	8	1652	40	8	9	41	1.68
317616--319480	896	2.1	883	77	7	1858	40	8	9	41	1.68
320031--320946	356	2.6	357	81	6	998	41	6	8	42	1.63
319838--320959	181	6.3	175	74	9	709	42	7	8	41	1.63
320956--323553	181	14.5	181	76	7	2094	40	8	10	41	1.69
320956--323552	713	3.6	707	78	7	2308	40	8	10	41	1.69
320956--323557	894	2.9	882	77	8	2471	40	8	10	41	1.69
324393--324418	11	2.4	11	100	0	52	84	0	0	15	0.62
324390--324426	16	2.3	16	86	13	58	83	0	2	13	0.74
325725--325759	18	1.9	18	88	0	52	45	20	20	14	1.85
326576--326616	18	2.3	18	87	8	57	2	17	2	78	0.98
326596--326705	13	7.6	13	71	22	60	2	10	6	80	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
326640--326702	28	2.2	29	85	2	83	1	12	3	82	0.86
326640--326705	29	2.3	29	86	2	89	1	12	3	83	0.83
326599--326701	50	2.0	55	83	9	135	2	11	6	78	1.05
326944--327098	64	2.4	65	81	9	174	14	16	11	56	1.66
326944--327111	66	2.6	63	80	11	178	14	16	10	58	1.63
330788--330853	19	3.4	18	77	10	60	74	1	9	15	1.14
331606--331653	3	16.3	3	95	4	89	66	0	0	33	0.92
332072--332126	18	3.1	19	79	10	62	41	1	12	43	1.53
331805--332125	175	1.8	175	86	5	468	43	5	8	41	1.60
331805--332155	177	2.0	175	84	6	460	43	6	8	41	1.62
332280--333929	181	9.2	182	76	5	1363	40	8	9	41	1.68
333945--333991	18	2.7	18	80	12	62	40	10	4	44	1.59
334046--334535	181	2.7	178	74	8	436	41	9	8	40	1.68
334595--337215	181	14.4	181	73	9	1561	41	10	8	40	1.69
334595--337215	357	7.2	355	71	10	1305	41	10	8	40	1.69
335334--335381	17	2.8	17	81	12	53	39	8	2	50	1.44
334615--336009	538	2.6	534	80	3	1493	41	10	7	39	1.68
335977--336050	36	2.1	36	97	0	139	47	5	6	40	1.53
336246--337202	180	5.3	180	76	7	567	40	9	8	42	1.67
337265--337778	181	2.9	176	80	5	577	40	7	10	41	1.68
338335--338656	177	1.8	178	79	7	379	42	9	7	40	1.65
337796--339463	180	9.3	180	76	8	1232	41	10	8	40	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
337796--339463	541	3.1	529	77	8	1550	41	10	8	40	1.69
337796--339465	359	4.7	356	75	9	945	40	10	8	40	1.69
339487--340860	181	7.6	180	76	4	1154	42	10	7	40	1.66
339487--340855	544	2.5	540	78	5	1388	42	10	7	40	1.66
340800--340916	56	2.1	56	93	0	198	54	7	4	33	1.48
340816--340910	28	3.4	29	65	17	74	54	7	2	35	1.40
340623--341090	237	2.0	239	80	3	532	45	10	6	38	1.63
340869--341772	174	5.1	177	76	8	678	42	10	8	38	1.70
342004--343656	179	9.2	177	75	9	1078	41	9	7	40	1.67
341812--343327	359	4.3	354	75	9	1092	41	9	8	40	1.67
343564--343768	112	1.8	114	81	4	263	35	12	6	45	1.69
343680--344298	180	3.4	182	77	9	500	39	10	9	40	1.71
344342--346698	180	13.1	179	75	8	1704	41	8	8	40	1.66
344347--347884	180	19.8	180	72	9	1113	41	9	8	40	1.67
344406--346491	359	5.8	352	72	11	934	41	8	8	40	1.66
344348--346692	539	4.4	532	76	9	1514	42	8	8	40	1.66
346299--346332	16	2.2	16	90	10	54	67	2	5	23	1.26
346678--346722	24	1.9	23	86	4	63	42	11	2	44	1.52
346546--346856	158	2.0	156	82	3	383	42	9	6	42	1.63
346700--347889	181	6.6	179	73	10	767	41	10	7	40	1.68
348457--349108	348	1.9	348	79	5	755	42	11	7	38	1.70
348608--349284	181	3.9	169	76	12	477	41	11	8	38	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
348287--349284	529	1.9	528	80	5	1183	42	10	8	38	1.70
348768--352894	181	23.1	181	73	9	2299	41	9	8	40	1.69
348837--349722	360	2.5	358	79	7	918	41	11	8	39	1.72
348768--349853	179	6.0	179	74	8	694	40	10	8	39	1.71
348837--349846	360	2.8	358	77	6	904	41	10	8	39	1.71
351015--351362	182	1.9	182	80	5	409	43	11	6	38	1.67
352774--353029	135	1.9	136	83	7	333	46	7	7	39	1.59
352251--353486	670	1.8	670	79	8	1456	41	9	8	40	1.68
352911--355355	539	4.6	530	77	7	1833	42	10	7	39	1.68
352907--355338	181	13.7	178	73	11	1208	42	10	7	39	1.68
352910--355355	358	6.9	356	74	10	1662	42	10	7	39	1.68
357027--357103	38	2.0	38	94	0	136	31	32	9	27	1.88
357718--357752	16	2.2	16	89	0	52	42	8	14	34	1.76
359993--360032	20	1.9	22	85	10	57	27	15	10	47	1.77
359988--367076	181	39.7	179	74	8	4449	42	9	8	39	1.68
359990--367076	358	19.8	360	73	9	4109	42	9	8	39	1.68
359988--367115	539	13.3	530	73	10	3114	42	9	8	39	1.68
365484--365516	18	1.9	17	88	11	50	33	6	12	48	1.65
369395--369442	20	2.3	20	79	10	53	45	0	16	37	1.48
375052--375088	19	1.9	19	88	0	56	40	13	2	43	1.58
375065--377702	181	14.8	177	71	9	807	42	9	7	40	1.66
375861--377570	181	9.6	179	73	9	854	42	10	7	39	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
376016--377341	711	1.9	711	85	2	1849	43	10	7	39	1.66
375058--377570	361	7.1	357	72	10	1279	42	9	7	40	1.67
377740--378111	176	2.1	178	80	8	418	41	9	8	40	1.69
378564--378956	144	2.7	142	81	4	450	34	15	10	40	1.81
382662--382716	3	18.3	3	84	0	56	61	7	3	27	1.39
382662--382716	15	3.7	15	82	0	65	61	7	3	27	1.39
387679--391132	180	19.3	175	73	11	1791	42	9	7	39	1.68
388825--388867	16	2.5	17	85	7	52	44	6	2	46	1.43
388995--389045	17	2.9	18	71	14	52	37	7	7	47	1.62
390628--391018	177	2.2	174	78	9	389	42	9	6	40	1.65
392164--392265	22	4.8	20	75	12	96	50	36	0	12	1.40
392158--392258	29	3.5	29	80	10	109	51	34	0	13	1.42
392164--392284	50	2.4	49	82	4	143	49	36	0	13	1.48
392432--392515	22	3.9	22	78	9	75	50	38	0	11	1.40
392425--392535	29	3.8	29	78	7	100	48	36	0	13	1.49
392394--392550	50	3.1	49	80	6	138	46	36	0	15	1.51
392489--392530	15	2.9	15	89	3	59	54	40	2	2	1.26
392574--392613	20	2.0	20	85	0	53	32	50	10	7	1.64
392159--393285	7	159.4	7	68	12	179	42	35	3	18	1.68
392872--392950	30	2.6	30	76	11	81	45	34	1	18	1.58
393081--393189	6	16.5	6	75	13	74	42	33	0	24	1.55
393081--393189	13	8.2	12	77	14	74	42	33	0	24	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
393249--393290	21	2.0	22	85	4	59	38	35	2	23	1.68
393464--393535	29	2.5	29	79	0	81	37	38	1	22	1.63
393399--393503	51	2.1	51	82	7	124	43	29	1	24	1.65
393415--393552	7	19.3	7	70	7	80	41	37	0	20	1.58
393633--393688	22	2.5	23	74	11	62	25	19	14	41	1.89
395981--397866	531	3.6	532	91	2	2819	43	8	7	40	1.63
399635--400396	181	4.2	179	77	8	695	43	9	7	40	1.64
400420--401486	182	5.9	181	75	6	761	43	8	6	41	1.62
400446--401485	364	2.9	354	76	9	976	43	8	6	40	1.61
401877--401915	18	2.2	18	90	0	60	17	5	15	61	1.51

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121