genome.fa.s79.2.7.7.80.10.50.1000.24.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167904.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_17, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  21107920

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   

This is table  24  of  121  ( 14423 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4253539--4253596	27	2.2	26	87	6	82	50	0	3	46	1.18
4253566--4253631	35	1.9	33	90	6	105	51	0	3	45	1.16
4253746--4253788	21	2.0	21	82	8	52	39	23	2	34	1.67
4260418--4260464	19	2.5	19	82	0	58	27	10	17	44	1.81
4261711--4261768	27	2.2	27	87	6	84	50	0	3	46	1.18
4262507--4262536	15	1.9	16	93	6	53	16	6	10	66	1.41
4263830--4263872	3	14.3	3	100	0	86	67	0	0	32	0.91
4263905--4264006	53	1.9	53	82	4	125	35	7	8	48	1.64
4264018--4264215	96	2.1	96	83	3	247	43	9	10	36	1.72
4264030--4264215	97	1.9	96	84	4	250	43	9	10	36	1.72
4264850--4264911	21	3.2	18	76	10	61	80	8	1	9	0.97
4264857--4264911	21	2.8	20	81	8	69	81	9	0	9	0.87
4264866--4264908	17	2.4	18	85	14	54	79	9	0	11	0.95
4266287--4266329	17	2.6	17	88	3	61	27	4	0	67	1.10
4267356--4267383	9	3.1	9	100	0	56	53	0	0	46	1.00
4268554--4268600	14	3.3	15	76	8	53	21	4	0	74	0.99
4268555--4268600	23	2.0	23	83	8	58	19	4	0	76	0.96
4268955--4269006	23	2.3	23	86	3	70	42	9	7	40	1.66
4269469--4269534	7	10.0	7	71	12	50	19	3	34	42	1.67
4269440--4269533	26	3.7	25	76	11	75	19	2	30	47	1.61
4269484--4269534	19	2.6	19	84	15	68	19	3	35	41	1.70
4272476--4272506	2	15.5	2	93	0	53	48	3	0	48	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4274252--4274292	19	2.1	20	90	4	66	39	0	0	60	0.96
4281528--4281591	17	3.9	17	74	11	55	31	0	4	64	1.14
4281699--4281738	19	2.1	19	85	0	53	77	0	2	20	0.88
4282781--4282914	48	3.0	43	80	8	117	43	15	10	30	1.81
4282986--4283167	99	1.8	99	87	0	274	42	20	13	23	1.88
4283013--4283333	165	1.9	166	84	1	421	42	20	11	24	1.86
4283279--4283376	43	2.4	40	81	11	101	42	24	6	26	1.78
4283177--4283541	99	3.6	99	78	8	362	41	22	12	23	1.88
4283322--4283706	165	2.3	165	86	1	524	41	22	12	22	1.88
4283479--4283607	66	2.0	66	88	0	195	44	24	10	20	1.83
4283544--4284053	99	5.1	99	81	5	556	41	20	14	23	1.89
4283525--4284040	205	2.6	199	85	3	676	40	21	13	23	1.89
4284338--4284427	35	2.6	35	81	0	108	33	10	14	42	1.79
4285358--4285393	16	2.3	16	90	4	56	0	19	0	80	0.71
4286032--4286085	11	4.7	11	80	8	54	7	11	1	79	1.00
4286043--4286090	12	4.0	12	81	5	53	8	10	2	79	1.02
4286030--4286068	19	2.1	19	85	0	51	5	12	0	82	0.83
4290553--4290585	14	2.3	15	89	5	50	30	0	3	66	1.06
4290930--4290968	19	2.1	18	85	4	51	74	0	0	25	0.82
4291835--4291878	21	2.2	20	88	8	63	79	0	9	11	0.93
4292220--4292287	24	2.8	24	82	8	77	30	2	1	64	1.17
4293381--4293413	10	3.3	10	84	16	50	27	0	3	69	1.03
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4293730--4293754	13	1.9	13	100	0	50	88	0	4	8	0.64
4293956--4293982	2	13.5	2	100	0	54	0	48	0	51	1.00
4295637--4295676	2	20.0	2	100	0	80	50	0	0	50	1.00
4298264--4298297	16	2.1	16	88	0	50	47	0	0	52	1.00
4298925--4299005	26	3.1	26	85	10	103	49	1	2	46	1.23
4302614--4302679	28	2.3	30	78	10	82	28	4	9	57	1.49
4307048--4307097	19	2.6	19	100	0	100	30	16	22	32	1.95
4307222--4307279	27	2.2	25	84	6	71	50	0	3	46	1.18
4307240--4307350	33	3.2	33	80	10	116	51	0	2	45	1.21
4307302--4307350	21	2.4	20	80	6	71	55	0	2	42	1.11
4309483--4309684	95	2.1	95	83	4	255	44	8	9	37	1.68
4311913--4311944	16	1.9	17	93	6	57	28	0	0	71	0.86
4312257--4312334	3	26.0	3	79	14	81	29	2	0	67	1.03
4312422--4312449	3	9.3	3	100	0	56	32	0	0	67	0.91
4312559--4312617	21	2.9	21	84	2	75	77	10	1	10	1.05
4313622--4313745	40	3.1	40	70	11	128	41	13	16	29	1.86
4313644--4313767	40	3.1	40	70	5	117	40	16	17	25	1.90
4313659--4313824	40	4.2	39	74	6	138	39	17	15	27	1.90
4313622--4313862	79	3.1	78	85	5	272	42	16	14	26	1.87
4313814--4313900	39	2.2	39	89	4	131	49	13	5	31	1.66
4325611--4326011	216	1.9	216	81	9	496	35	11	7	45	1.69
4326068--4326102	17	2.1	17	89	10	54	31	0	0	68	0.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4327140--4327174	3	11.7	3	87	0	52	62	2	2	31	1.24
4327355--4328139	48	16.4	48	77	10	612	38	21	11	27	1.89
4327403--4328139	288	2.6	284	79	6	740	38	21	12	27	1.89
4327355--4328139	49	16.4	45	74	12	253	38	21	11	27	1.89
4339700--4339724	11	2.3	11	100	0	50	16	0	0	84	0.63
4340378--4340409	11	3.1	11	86	13	50	28	0	0	71	0.86
4340659--4340701	22	1.9	23	85	4	61	9	16	37	37	1.81
4340827--4340894	26	2.6	26	90	0	109	30	14	19	35	1.92
4341411--4341457	23	2.1	23	88	7	71	36	10	6	46	1.64
4341538--4341569	16	2.0	16	100	0	64	68	0	31	0	0.90
4341545--4341569	13	1.9	13	100	0	50	68	0	32	0	0.90
4341542--4341600	19	3.1	19	85	9	68	74	0	23	1	0.91
4341621--4341649	3	9.7	3	100	0	58	68	0	0	31	0.89
4342704--4342780	14	5.1	14	74	20	50	27	0	3	68	1.06
4342907--4342938	6	5.2	6	96	3	55	18	0	0	81	0.70
4343417--4343463	15	3.1	15	85	14	53	82	0	12	4	0.80
4343412--4343463	16	3.2	16	79	12	54	82	0	11	5	0.82
4343417--4343463	22	2.1	22	96	4	85	82	0	12	4	0.80
4346089--4346163	37	2.0	37	97	0	141	46	10	5	37	1.61
4347103--4347147	2	22.5	2	81	0	54	46	2	4	46	1.35
4347111--4347145	12	2.9	12	95	0	61	42	2	5	48	1.41
4348705--4348749	20	2.3	20	88	3	65	53	6	6	33	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4350441--4350493	22	2.4	21	81	12	61	24	3	1	69	1.15
4350456--4350507	23	2.3	23	75	12	54	30	1	3	63	1.23
4350906--4351277	132	3.0	124	82	9	402	34	8	5	50	1.58
4351044--4351277	119	1.9	122	87	4	350	34	8	5	50	1.57
4351404--4351458	9	5.9	9	82	4	56	74	1	7	16	1.12
4351394--4351464	20	3.6	19	72	14	56	73	2	5	18	1.16
4352765--4352929	43	3.8	43	82	4	181	41	12	12	33	1.80
4352765--4352929	87	1.9	86	83	3	215	41	12	12	33	1.80
4352875--4353120	114	2.2	113	83	5	316	41	14	11	32	1.82
4353141--4353173	16	2.1	16	94	0	57	27	21	27	24	1.99
4361414--4361672	132	2.0	130	86	3	358	35	8	5	50	1.55
4361433--4361790	132	2.8	131	80	7	326	35	8	5	50	1.55
4361779--4361828	25	2.0	24	85	11	66	22	6	0	72	1.07
4361906--4361956	13	3.9	12	77	22	50	78	0	7	13	0.96
4363167--4363206	20	2.0	21	90	5	64	25	27	27	20	1.99
4363260--4363300	9	4.5	10	90	9	54	26	0	7	65	1.18
4365621--4365950	59	5.7	56	87	7	410	43	6	13	35	1.72
4365621--4365950	117	2.8	114	86	7	457	43	6	13	35	1.72
4365620--4365950	176	1.9	174	88	4	504	43	6	13	35	1.72
4368770--4368814	15	3.0	15	83	0	54	20	8	2	68	1.27
4369686--4369736	14	3.8	14	76	10	61	19	5	33	41	1.76
4369682--4369746	26	2.5	26	97	0	121	16	4	35	43	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4371731--4371919	65	2.9	65	82	6	204	39	11	12	37	1.78
4371719--4372008	132	2.2	132	77	8	283	38	11	11	39	1.77
4375047--4375077	16	1.9	16	93	0	53	48	0	3	48	1.17
4379246--4379278	16	2.0	17	94	5	59	42	0	6	51	1.26
4379483--4379517	15	2.3	15	85	0	52	57	2	0	40	1.14
4381890--4382042	62	2.5	59	80	8	150	44	7	11	35	1.70
4383541--4383596	21	2.6	22	75	8	62	73	0	5	21	1.03
4383577--4383601	9	2.8	9	100	0	50	88	0	0	12	0.53
4383696--4383738	3	14.3	3	100	0	86	67	0	0	32	0.91
4383890--4384230	29	11.7	29	75	10	261	48	33	1	17	1.54

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121