genome.fa.s79.2.7.7.80.10.50.1000.103.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167904.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_17, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  21107920

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   

This is table  103  of  121  ( 14423 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17512302--17512377	17	3.7	21	76	20	72	18	0	35	46	1.50
17512302--17512462	16	10.2	16	79	7	159	17	1	32	47	1.58
17512703--17512738	3	12.0	3	100	0	72	66	0	0	33	0.92
17513594--17513627	13	2.6	13	85	0	50	2	2	8	85	0.80
17513974--17514023	9	5.7	9	78	4	57	42	0	2	56	1.11
17514383--17514442	22	2.7	23	75	14	72	28	18	25	28	1.98
17514198--17514530	130	2.5	130	81	6	361	37	18	20	24	1.94
17514511--17514559	23	2.1	23	88	0	71	32	18	20	28	1.96
17514435--17514634	111	1.8	111	82	0	256	40	20	20	19	1.92
17514857--17514988	41	3.2	41	81	7	151	34	15	17	33	1.91
17523255--17523509	15	16.9	15	69	20	117	20	1	31	46	1.60
17523262--17523406	29	5.0	28	72	18	93	20	1	32	45	1.60
17523262--17523384	29	4.2	28	75	14	115	21	0	31	46	1.57
17523356--17523423	22	3.0	22	76	8	64	19	1	33	45	1.59
17523405--17523487	31	2.7	32	83	3	98	19	2	30	48	1.62
17523357--17523509	23	6.6	23	70	12	80	20	1	30	47	1.61
17523353--17523513	62	2.6	60	78	9	162	20	1	30	47	1.61
17524960--17525030	3	24.0	3	77	5	65	40	0	0	59	0.98
17526237--17526277	6	6.8	6	83	10	57	34	0	0	65	0.93
17526237--17526278	11	4.1	11	85	14	63	35	0	0	64	0.94
17527574--17527648	37	2.0	39	82	15	95	56	0	2	41	1.13
17527614--17527647	18	1.9	17	88	5	50	52	0	0	47	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17527949--17527976	14	2.0	14	100	0	56	35	0	0	64	0.94
17528537--17528587	24	2.2	23	82	10	59	31	1	3	62	1.24
17530023--17530048	2	13.0	2	100	0	52	50	0	0	50	1.00
17539228--17539274	23	2.1	22	84	7	60	2	17	0	80	0.80
17539249--17539324	27	2.6	29	82	13	86	2	18	0	78	0.86
17539228--17539324	30	3.3	28	75	18	83	2	19	0	78	0.85
17539222--17539323	16	6.9	14	70	22	59	2	19	0	77	0.90
17539246--17539322	37	2.1	38	87	2	111	2	18	0	79	0.85
17539229--17539324	19	5.0	19	74	6	95	2	19	0	78	0.86
17543253--17543550	164	1.8	165	84	3	413	36	12	8	42	1.72
17552206--17552255	24	2.1	24	84	0	64	46	14	10	30	1.77
17554986--17555034	24	2.0	26	84	8	66	48	0	0	51	1.00
17555003--17555040	20	1.9	20	88	0	58	47	0	0	52	1.00
17556456--17556510	23	2.3	25	75	6	60	38	0	0	61	0.96
17560174--17560215	2	21.5	2	90	4	68	52	0	0	47	1.00
17560735--17561020	57	5.0	54	80	11	268	34	9	5	50	1.58
17560734--17561019	116	2.5	113	83	8	328	34	9	5	50	1.58
17560998--17561053	27	2.1	28	83	6	71	25	3	3	67	1.22
17562215--17562247	15	2.1	16	88	5	50	18	3	0	78	0.87
17562426--17562455	2	15.5	2	93	6	53	53	0	0	46	1.00
17562716--17562748	10	3.4	10	91	4	50	42	0	0	57	0.98
17563545--17563585	20	2.0	22	85	9	59	46	2	2	48	1.28
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17564078--17564110	14	2.4	14	94	0	57	48	27	6	18	1.71
17564420--17564466	3	15.7	3	100	0	94	34	0	0	65	0.93
17570532--17570564	14	2.4	14	94	0	57	36	0	0	63	0.95
17571419--17571468	23	2.2	23	82	7	57	32	0	2	66	1.03
17571496--17571547	15	3.4	15	71	5	50	46	0	0	53	1.00
17572413--17572471	29	2.0	30	83	3	75	47	3	0	49	1.18
17575127--17575178	27	1.9	27	84	7	70	34	0	3	61	1.14
17578971--17579044	12	6.2	12	70	0	58	6	8	56	28	1.54
17578973--17579035	24	2.6	24	87	0	90	7	6	57	28	1.52
17578956--17579062	36	3.0	36	80	0	97	6	7	57	28	1.51
17578949--17579065	60	2.0	60	85	0	162	5	6	58	28	1.47
17579056--17579225	30	5.7	30	83	0	171	20	4	50	24	1.68
17579046--17579221	60	2.9	60	81	0	190	18	5	51	24	1.66
17579861--17579890	15	2.0	15	93	0	51	76	0	0	23	0.78
17580414--17580505	35	2.6	34	80	8	105	67	0	5	27	1.12
17594238--17594297	30	2.0	30	100	0	120	30	26	10	33	1.89
17598997--17599043	16	2.9	16	78	12	51	27	2	0	70	0.99
17600170--17600226	21	2.6	23	81	13	66	14	7	5	73	1.21
17604306--17604336	16	1.9	16	93	0	53	9	3	0	87	0.66
17612050--17612105	27	2.0	28	89	3	87	41	3	7	48	1.48
17612053--17612112	27	2.2	28	84	3	77	45	3	6	45	1.46
17622156--17622331	87	2.0	87	97	0	334	15	26	27	30	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17623385--17623433	18	2.5	19	80	16	55	46	0	2	51	1.12
17628425--17628537	56	2.0	56	96	0	208	44	16	2	36	1.62
17629363--17629408	23	2.0	22	87	4	65	52	2	0	45	1.13
17634031--17634070	3	13.3	3	94	0	71	30	0	2	67	1.04
17634737--17634780	16	2.7	16	82	3	52	2	27	0	70	0.99
17634742--17634785	17	2.5	17	85	10	54	2	27	0	70	0.99
17634749--17634790	16	2.8	15	82	7	50	0	23	0	76	0.79
17634743--17634791	18	2.9	16	82	14	62	2	24	0	73	0.94
17636481--17636518	20	2.0	18	90	10	58	34	7	10	47	1.67
17636494--17636538	17	2.6	17	82	10	56	31	6	8	53	1.58
17636547--17636851	24	13.2	24	72	13	246	33	3	9	54	1.49
17636626--17636750	23	5.3	23	69	17	105	32	2	10	54	1.47
17636547--17636774	47	4.9	47	90	4	338	32	3	10	54	1.49
17636858--17636896	18	2.2	18	86	9	53	30	5	15	48	1.66
17636860--17636955	49	1.9	51	81	14	119	32	5	11	51	1.60
17636976--17637036	12	5.2	12	70	18	56	29	9	16	44	1.80
17636934--17637092	35	4.4	35	82	7	169	30	7	13	48	1.70
17640001--17640058	20	2.9	20	77	10	73	48	12	5	34	1.63
17640028--17640090	24	2.5	24	70	14	65	52	14	3	30	1.57
17640181--17640236	24	2.3	23	82	14	69	55	8	5	30	1.53
17640317--17640375	23	2.7	23	86	5	77	55	13	5	25	1.58
17640321--17640459	55	2.5	55	86	7	160	53	10	5	30	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17640336--17640406	32	2.1	33	84	10	90	56	11	4	28	1.53
17640321--17640465	53	2.7	55	85	9	181	53	9	4	31	1.54
17640430--17640568	21	6.3	20	69	19	62	53	10	3	32	1.51
17640444--17640580	24	6.0	24	75	19	141	55	10	2	31	1.48
17640434--17640560	47	2.7	47	90	7	188	55	8	2	33	1.44
17640505--17640569	21	3.1	21	84	6	80	56	9	3	30	1.46
17641164--17641201	18	2.1	18	90	9	60	10	15	0	73	1.09
17641802--17641894	42	2.2	44	82	3	109	36	15	10	37	1.82
17641944--17642031	18	4.7	18	77	9	79	30	13	11	44	1.79
17641965--17642158	18	10.6	18	69	13	101	28	10	12	48	1.73
17641953--17642159	55	3.8	56	78	6	183	28	11	12	47	1.75
17641973--17642145	74	2.4	74	76	9	176	28	10	11	49	1.72
17642051--17642230	90	2.0	91	82	6	222	30	11	11	46	1.75
17642236--17642326	35	2.6	36	82	10	107	25	9	14	50	1.73
17642271--17642354	18	4.7	18	72	18	77	27	11	14	46	1.79
17642265--17642354	35	2.5	35	80	10	94	26	12	13	47	1.78
17643679--17643712	17	1.9	18	88	5	52	14	5	0	79	0.91
17643769--17643803	18	2.0	17	94	5	61	31	5	11	51	1.61
17643808--17643850	20	2.4	17	82	17	52	25	4	9	60	1.47
17643833--17643877	14	3.4	14	82	14	60	17	6	11	64	1.46
17643831--17643891	25	2.5	25	86	7	90	19	6	11	62	1.50
17646496--17646545	3	16.7	3	100	0	100	66	0	0	34	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17646544--17646597	3	18.0	3	100	0	108	33	0	0	66	0.92
17647473--17647536	19	3.3	19	76	14	60	75	1	6	17	1.09
17647947--17647996	20	2.4	22	76	10	59	32	34	2	32	1.69
17648360--17648397	12	3.2	12	85	3	51	81	5	10	2	0.94
17648411--17648440	10	3.1	10	95	4	53	63	0	0	36	0.95
17648500--17648542	3	14.0	3	95	4	77	67	0	0	32	0.91
17648650--17648740	26	3.5	26	75	8	87	28	23	26	21	1.99
17660836--17660885	22	2.3	22	82	10	66	72	4	20	4	1.18
17660962--17661009	3	16.3	3	86	4	71	62	2	2	33	1.18
17660962--17661007	23	2.0	23	91	0	74	63	2	2	32	1.19

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121