genome.fa.s79.2.7.7.80.10.50.1000.111.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167904.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_17, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  21107920

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   

This is table  111  of  121  ( 14423 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18874259--18874310	14	4.0	13	80	14	63	57	0	0	42	0.98
18874263--18874336	28	2.7	28	83	6	80	66	1	1	31	1.09
18874259--18874309	13	3.8	14	80	17	63	56	0	0	43	0.99
18876814--18876856	21	2.0	22	82	13	54	34	6	4	53	1.49
18878523--18878551	15	1.9	15	100	0	58	41	13	0	44	1.44
18879288--18879329	19	2.2	19	91	0	66	45	2	7	45	1.44
18881606--18881657	23	2.3	23	93	0	86	71	7	11	9	1.32
18883171--18883415	21	11.8	21	73	11	148	48	2	2	46	1.30
18883171--18883406	61	3.8	61	76	11	212	48	2	2	46	1.31
18883172--18883372	82	2.4	81	81	8	219	47	3	2	46	1.33
18883182--18883380	10	19.3	10	64	14	66	45	3	3	47	1.35
18884645--18884692	20	2.4	20	83	13	55	68	2	0	29	1.01
18884678--18884935	21	12.5	21	79	4	247	47	3	3	46	1.35
18884678--18884933	61	4.1	61	75	11	227	47	3	3	45	1.35
18884679--18884901	82	2.7	79	80	9	241	47	3	2	46	1.34
18884689--18884888	10	19.4	10	64	14	68	46	3	3	47	1.35
18885113--18885213	22	4.8	22	75	8	93	39	1	6	51	1.40
18885139--18885213	11	6.8	11	71	6	62	34	2	8	54	1.44
18885262--18885299	18	2.0	20	85	10	53	50	0	0	50	1.00
18885373--18885446	37	2.0	37	81	5	87	41	4	4	50	1.40
18892415--18892498	42	2.0	42	95	0	150	22	13	15	48	1.79
18897361--18897456	44	2.2	44	96	0	174	34	13	10	41	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18902599--18902658	30	2.0	31	83	9	79	43	13	3	40	1.60
18904674--18904748	31	2.5	31	82	6	82	49	5	1	44	1.33
18904762--18904795	17	1.9	18	94	5	61	44	0	5	50	1.26
18906476--18906545	27	2.6	27	82	6	72	44	10	10	35	1.72
18906662--18906718	27	2.2	25	87	6	78	40	10	7	42	1.66
18906812--18906910	47	2.1	47	88	1	146	59	5	8	27	1.47
18912289--18912326	13	3.2	12	88	7	51	23	0	2	73	0.95
18912337--18912391	28	2.0	28	82	7	67	30	3	1	63	1.22
18912429--18912555	21	5.8	22	73	19	97	26	4	3	65	1.28
18912440--18912541	20	5.1	20	71	24	63	26	5	2	64	1.30
18912423--18912539	44	2.7	44	82	11	136	26	5	3	64	1.30
18913551--18914138	59	10.1	57	83	8	659	44	6	12	36	1.69
18913569--18914139	117	4.8	117	86	6	683	44	7	12	35	1.70
18913551--18914140	177	3.4	174	86	5	744	44	7	12	36	1.70
18914012--18914054	16	2.6	17	77	7	52	46	9	0	44	1.35
18913559--18914140	58	9.9	56	83	8	646	45	7	12	35	1.70
18914163--18914198	14	2.8	13	88	12	56	8	5	0	86	0.72
18914161--18914201	21	2.0	21	85	9	57	7	7	0	85	0.75
18914166--18914203	14	2.7	14	84	8	51	10	5	0	84	0.77
18915470--18915499	15	2.0	15	93	0	51	23	26	3	46	1.68
18918240--18918295	10	4.9	12	89	10	75	78	0	14	7	0.95
18919991--18920452	42	11.5	40	78	9	401	24	17	22	36	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18920173--18920303	68	1.9	69	93	1	228	26	16	19	37	1.93
18920009--18920450	235	1.9	235	90	0	706	24	16	21	37	1.94
18920242--18920452	41	5.1	41	84	4	226	23	16	22	36	1.94
18920766--18920871	21	4.9	20	73	21	90	25	3	3	66	1.25
18920772--18920897	24	5.7	22	70	20	84	26	4	3	65	1.28
18920766--18920871	44	2.5	42	80	15	119	25	3	3	66	1.25
18920781--18920909	44	3.0	42	78	15	136	25	5	3	65	1.28
18921799--18921833	17	2.1	17	88	0	52	14	2	2	80	0.95
18921900--18921929	14	2.1	14	93	0	51	50	0	6	43	1.28
18921859--18922190	58	5.7	58	83	10	424	44	6	13	35	1.70
18921858--18922191	117	2.8	118	90	2	512	44	6	13	35	1.70
18922101--18922191	27	3.2	27	66	22	69	40	6	15	37	1.73
18922215--18922254	14	2.9	14	92	0	62	10	7	0	82	0.84
18923519--18923569	8	6.1	8	76	17	50	78	0	9	11	0.97
18923532--18923589	27	2.1	27	87	6	82	75	0	12	12	1.04
18924926--18925377	44	10.5	44	77	7	345	25	13	15	45	1.83
18924926--18925452	43	12.2	43	76	6	325	25	12	16	45	1.83
18924926--18925452	87	6.1	86	75	5	361	25	12	16	45	1.83
18925899--18925944	21	2.2	21	92	3	76	73	8	6	10	1.23
18926014--18926055	20	2.0	21	90	4	68	23	4	14	57	1.56
18927022--18927075	27	2.1	26	83	13	67	42	9	9	38	1.69
18929265--18929301	2	18.5	2	94	0	65	45	0	2	51	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18931808--18931836	2	14.5	2	100	0	58	51	0	0	48	1.00
18932330--18932358	2	14.5	2	100	0	58	51	0	0	48	1.00
18933346--18933378	2	16.5	2	100	0	66	51	0	0	48	1.00
18933366--18933541	87	2.0	87	98	0	343	41	10	17	30	1.83
18933584--18933609	2	13.0	2	100	0	52	50	0	0	50	1.00
18948844--18948873	15	2.0	15	93	0	51	70	0	0	30	0.88
18949434--18949492	28	2.1	28	80	0	64	38	6	6	47	1.57
18949569--18949616	15	3.2	15	78	0	60	47	0	2	50	1.12
18949554--18949625	30	2.2	33	76	11	87	48	1	5	44	1.34
18972776--18972801	12	2.2	12	100	0	52	61	7	7	23	1.49
18981739--18981796	25	2.3	25	90	0	89	41	8	15	34	1.78
18988166--18988208	11	3.7	11	79	11	50	62	0	2	34	1.08
18988166--18988226	24	2.5	24	83	0	68	60	0	3	36	1.13
18988290--18988351	25	2.4	25	75	15	65	40	0	3	56	1.15
18988831--18988923	16	5.3	18	68	17	61	53	0	0	46	1.00
18988894--18988964	27	2.6	27	86	10	108	46	0	0	53	1.00
18988892--18988964	26	2.6	28	87	6	105	46	0	0	53	1.00
18988888--18988975	26	3.3	27	80	13	101	48	0	0	51	1.00
18989576--18989619	17	2.5	18	85	3	54	47	4	4	43	1.44
18990601--18990653	22	2.5	22	90	3	81	50	0	0	49	1.00
18990586--18990630	15	2.9	16	76	6	56	53	0	0	46	1.00
18997536--18997569	11	3.1	11	87	12	52	52	0	0	47	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18998869--18998945	22	3.5	22	83	0	82	50	9	5	35	1.56
19017407--19017438	16	2.0	16	100	0	64	43	18	0	37	1.51
19017433--19017465	15	2.2	15	94	0	57	36	18	6	39	1.75
19022518--19022550	15	2.2	15	94	0	57	36	18	6	39	1.75
19027611--19027643	15	2.2	15	94	0	57	36	18	6	39	1.75
19032694--19032725	16	2.0	16	100	0	64	43	18	0	37	1.51
19032720--19032752	15	2.2	15	94	0	57	36	18	6	39	1.75
19040792--19040919	20	6.3	21	70	20	62	56	1	0	42	1.09
19040830--19040888	18	3.2	20	83	11	72	55	0	0	44	0.99
19040830--19040888	19	3.2	19	83	9	68	55	0	0	44	0.99
19040865--19040914	11	4.6	11	78	11	50	64	0	0	36	0.94
19040863--19040961	39	2.5	38	81	12	103	58	3	0	38	1.14
19040860--19040974	37	3.1	36	76	15	117	58	2	0	39	1.12
19049648--19049692	21	2.0	21	87	8	63	33	0	0	66	0.92
19049702--19049768	24	2.7	25	86	9	84	29	5	1	62	1.28
19049699--19049773	24	3.1	23	77	12	71	29	6	4	60	1.41
19061480--19061537	18	3.2	18	75	4	64	44	0	0	55	0.99
19061477--19061557	30	2.7	32	83	11	91	51	0	0	48	1.00
19061601--19061644	11	3.8	11	80	11	52	31	0	0	68	0.90
19061601--19061662	16	3.6	17	79	16	58	32	3	1	62	1.20
19061575--19061642	24	2.9	24	80	8	77	35	0	0	64	0.94
19061595--19061648	16	3.6	15	80	14	58	35	0	0	64	0.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19069674--19069701	14	2.0	14	100	0	56	28	0	42	28	1.56
19069837--19070023	103	1.8	104	86	1	277	42	17	14	25	1.87
19075584--19075617	2	17.0	2	87	0	50	50	5	0	44	1.26
19087980--19088034	25	2.2	25	96	3	103	49	0	5	45	1.25
19094081--19094112	14	2.3	14	100	0	64	40	0	0	59	0.97
19094081--19094124	14	3.2	14	90	3	54	43	0	2	54	1.12
19094416--19094450	18	2.0	17	88	5	52	60	0	0	40	0.97
19094428--19094473	22	2.0	25	83	12	62	50	0	4	45	1.21
19094426--19094486	26	2.6	22	75	12	59	47	0	3	49	1.18
19094554--19094578	2	12.5	2	100	0	50	48	0	0	52	1.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121