genome.fa.s79.2.7.7.80.10.50.1000.93.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167904.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_17, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  21107920

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   

This is table  93  of  121  ( 14423 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15781520--15781919	129	3.1	131	77	8	356	43	9	9	38	1.68
15784339--15784488	77	1.9	77	84	0	201	38	21	9	31	1.85
15787710--15787771	12	5.3	11	73	9	52	79	6	0	14	0.93
15788727--15788823	42	2.3	43	87	1	133	40	14	14	30	1.86
15789025--15789113	34	2.6	34	98	0	169	35	11	20	32	1.88
15789176--15789287	36	3.2	35	74	9	88	41	21	14	22	1.89
15789415--15789487	32	2.2	34	78	11	80	39	20	13	26	1.90
15795358--15795508	51	3.0	49	80	8	169	31	9	4	54	1.52
15796579--15796605	11	2.5	11	100	0	54	7	0	0	92	0.38
15796705--15797027	43	7.6	43	81	8	299	43	16	15	24	1.86
15802360--15802392	2	17.5	2	87	12	52	48	0	0	51	1.00
15802630--15802675	2	23.0	2	95	0	83	50	2	0	47	1.13
15804789--15804821	11	2.8	12	86	13	50	3	15	0	81	0.80
15808674--15808706	16	2.1	16	88	5	50	75	0	21	3	0.93
15808937--15808976	17	2.4	17	86	0	53	35	10	12	42	1.76
15808950--15809014	17	3.8	17	74	10	60	29	12	10	47	1.75
15808992--15809071	18	4.4	18	71	3	54	33	22	5	38	1.76
15809164--15809242	18	4.4	17	72	12	52	27	13	15	43	1.85
15809256--15809294	19	2.0	21	90	10	64	25	10	15	48	1.76
15809258--15809306	23	2.4	19	83	13	53	28	10	12	48	1.73
15809373--15809504	41	3.2	41	75	12	126	28	15	14	40	1.87
15809853--15809901	17	2.8	18	87	6	66	77	10	2	10	1.07
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15809853--15809901	9	5.7	9	83	7	66	77	10	2	10	1.07
15809843--15809918	8	9.2	8	77	9	66	73	9	1	15	1.14
15809874--15809925	17	3.1	16	81	15	61	73	9	0	17	1.09
15810401--15810493	24	3.8	23	75	9	87	58	9	2	30	1.42
15810487--15810522	17	2.1	17	89	0	54	47	13	2	36	1.58
15810528--15810605	20	3.5	22	80	18	88	58	8	3	28	1.46
15810526--15810611	23	3.7	23	76	17	72	60	8	4	26	1.45
15810741--15810771	16	1.9	16	93	0	53	70	0	3	25	1.02
15811452--15811829	132	2.9	129	78	8	374	42	7	9	40	1.67
15814255--15814407	77	2.0	77	87	5	220	37	20	8	32	1.83
15818237--15818283	3	16.3	3	78	8	53	65	4	0	29	1.11
15818243--15818283	12	3.6	12	87	9	59	68	4	0	26	1.10
15818296--15818340	18	2.3	20	81	7	58	75	11	0	13	1.05
15818277--15818330	28	2.0	28	85	10	76	70	11	0	18	1.16
15818304--15818347	18	2.4	18	78	14	54	77	9	0	13	0.99
15819157--15819197	3	13.7	3	100	0	82	31	0	0	68	0.90
15819502--15819608	36	2.9	36	78	12	119	42	17	15	24	1.89
15820049--15820137	37	2.4	36	83	1	106	47	23	7	21	1.77
15820052--15820137	36	2.4	37	82	2	102	48	23	6	20	1.73
15823953--15823992	18	2.2	18	90	0	62	27	0	0	72	0.85
15824718--15824764	24	1.9	25	91	4	78	44	31	2	21	1.64
15824767--15824801	17	1.9	19	88	11	56	14	2	2	80	0.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15825942--15825985	20	2.1	21	87	4	63	34	6	13	45	1.70
15827907--15827967	26	2.3	26	86	10	81	44	34	3	18	1.66
15827987--15828037	19	2.7	19	75	0	66	45	27	1	25	1.64
15829991--15830031	16	2.8	16	85	14	61	43	0	0	56	0.99
15834310--15834345	18	2.1	18	89	5	56	50	8	13	27	1.71
15834378--15834490	5	23.6	5	69	18	71	3	19	1	75	1.04
15834362--15834491	23	5.7	22	74	15	95	3	19	1	76	1.00
15836297--15836372	20	3.8	20	78	13	86	14	0	31	53	1.41
15839360--15839389	13	2.3	13	94	0	51	23	6	3	66	1.30
15841863--15842143	58	4.9	57	80	8	329	45	7	11	35	1.69
15841864--15842143	116	2.4	115	88	4	402	45	7	11	35	1.69
15848918--15848953	16	2.2	16	90	5	54	77	5	11	5	1.10
15852004--15852216	104	2.0	104	94	0	372	38	41	2	17	1.62
15852193--15852230	19	2.0	19	89	0	58	34	50	0	15	1.45
15852354--15852445	42	2.2	41	84	5	114	44	36	3	15	1.62
15852910--15852948	20	1.9	21	89	5	62	53	5	0	41	1.23
15852956--15853001	24	2.0	23	82	4	56	56	6	10	26	1.58
15858496--15858525	14	2.1	15	93	6	53	0	3	6	90	0.56
15858768--15858936	84	2.0	84	97	0	320	42	11	1	44	1.48
15860070--15860098	9	3.3	9	90	9	51	20	0	0	79	0.74
15862045--15862205	3	54.0	3	70	17	81	57	7	4	30	1.46
15862047--15862167	63	1.9	64	84	5	165	57	6	4	32	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15862083--15862176	40	2.5	36	77	10	98	55	9	4	30	1.51
15862156--15862207	22	2.3	23	80	10	61	63	7	3	25	1.38
15862428--15862781	55	6.5	55	77	4	297	40	15	21	22	1.90
15862571--15862778	109	1.9	109	85	2	283	43	15	19	20	1.88
15863858--15863891	18	1.9	17	88	5	50	5	11	0	82	0.83
15868336--15868398	23	2.9	21	76	19	65	68	4	0	26	1.10
15868363--15868408	24	1.9	24	82	8	58	76	2	2	19	1.00
15868758--15868800	20	2.1	20	82	4	50	46	30	2	20	1.63
15869238--15869427	3	65.0	3	72	18	118	57	5	3	32	1.40
15869378--15869429	22	2.3	23	80	10	61	63	5	3	26	1.34
15869910--15870017	34	3.1	34	80	9	112	44	13	11	30	1.79
15869931--15870029	34	2.9	35	80	5	96	40	13	14	32	1.84
15874729--15874909	74	2.5	74	84	9	221	33	11	7	48	1.66
15874880--15874990	37	2.9	40	80	8	122	39	10	3	45	1.56
15874882--15875072	40	4.9	38	74	10	136	38	11	3	46	1.58
15878617--15878652	2	17.5	2	88	5	54	47	0	5	47	1.25
15885208--15885258	16	3.3	15	78	8	57	25	0	1	72	0.95
15885205--15885268	20	3.2	20	70	12	51	28	0	1	70	0.97
15885354--15885412	20	2.6	22	79	17	68	42	0	1	55	1.09
15885362--15885452	22	4.3	22	74	13	93	42	0	0	57	0.99
15885395--15885502	15	7.2	15	72	18	91	43	0	0	55	1.06
15885359--15885502	49	3.2	44	80	11	152	44	0	0	54	1.04
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15885418--15885510	34	2.7	33	85	6	123	46	1	0	52	1.07
15885425--15885510	18	5.3	15	72	19	66	46	1	0	52	1.08
15886337--15886361	6	4.2	6	100	0	50	16	0	0	84	0.63
15888270--15888462	44	4.3	44	70	9	147	41	16	13	29	1.86
15889529--15889585	18	3.2	17	85	11	78	7	10	0	82	0.84
15889545--15889585	9	4.7	9	90	3	66	7	7	0	85	0.75
15891097--15891123	14	1.9	14	100	0	54	29	22	3	44	1.70
15895435--15895477	19	2.1	21	83	8	54	27	4	11	55	1.55
15896150--15896227	40	1.9	40	82	10	95	52	1	0	46	1.08
15896157--15896212	11	4.6	12	72	18	53	57	1	0	41	1.09
15898844--15898915	37	2.0	37	83	8	94	41	0	5	52	1.24
15899129--15899229	49	2.1	49	100	0	202	32	7	9	49	1.65
15899569--15899602	16	2.1	16	89	10	52	76	5	5	11	1.14
15901376--15901432	16	3.4	16	74	11	53	45	1	0	52	1.11
15901423--15901470	21	2.4	19	89	6	69	47	4	2	45	1.33
15901449--15901525	27	2.6	31	74	17	92	53	2	3	40	1.33
15901465--15901517	27	2.0	27	100	0	106	54	0	3	41	1.18
15903775--15903840	32	2.1	30	83	10	80	25	24	4	45	1.72
15906295--15906335	20	2.2	18	86	8	55	51	4	4	39	1.45
15907234--15907264	15	2.0	16	93	6	55	41	6	12	38	1.69
15912191--15912227	19	1.9	20	88	5	58	70	2	8	18	1.25
15912517--15912552	18	2.1	18	89	5	56	8	0	11	80	0.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15912654--15912823	82	2.1	82	87	2	243	35	14	14	35	1.87
15912855--15912959	42	2.6	40	79	8	122	38	5	12	43	1.66
15918432--15918547	10	11.3	10	68	30	68	70	1	3	24	1.12
15918408--15918544	19	7.6	18	71	21	83	70	2	5	22	1.18
15918430--15918490	14	4.9	13	70	21	51	72	0	8	19	1.10
15918470--15918552	16	4.9	17	76	15	75	71	2	1	25	1.06
15919329--15919375	23	2.1	22	84	11	60	27	4	2	65	1.22
15919868--15919926	28	2.1	28	90	0	91	22	11	5	61	1.50
15920524--15920565	21	2.0	21	100	0	84	38	14	9	38	1.78
15920876--15920911	2	18.0	2	100	0	72	50	0	0	50	1.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121