genome.fa.s79.2.7.7.80.10.50.1000.95.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167904.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_17, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  21107920

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   

This is table  95  of  121  ( 14423 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16109386--16109510	46	2.7	46	85	2	153	36	12	14	36	1.83
16109523--16109565	22	2.1	21	87	12	63	74	9	2	13	1.16
16115365--16115484	63	1.9	62	83	5	152	41	13	15	29	1.85
16115403--16115552	62	2.4	62	82	3	158	39	16	11	32	1.84
16116449--16116504	25	2.2	25	96	0	103	50	0	3	46	1.19
16122639--16122933	55	5.5	55	73	10	180	42	13	16	27	1.86
16124539--16124590	13	3.8	13	78	9	59	30	1	0	67	1.02
16124539--16124589	7	7.4	7	76	12	52	31	1	0	66	1.03
16124540--16124596	28	2.0	28	93	0	96	33	1	0	64	1.04
16128636--16128677	21	2.0	21	90	0	66	33	21	11	33	1.90
16130182--16130233	17	3.1	16	75	8	50	25	0	3	71	1.03
16130254--16130326	4	17.5	4	75	10	51	73	1	2	21	1.03
16130270--16130303	11	3.1	11	82	0	50	76	0	2	20	0.92
16130269--16130359	38	2.4	37	80	12	94	68	3	2	26	1.17
16130430--16130479	17	3.1	17	77	16	61	70	0	2	28	0.99
16136481--16136582	49	2.1	49	100	0	204	33	6	23	36	1.82
16140756--16140796	22	2.0	22	85	9	59	29	0	9	60	1.28
16140888--16140912	13	1.9	13	100	0	50	40	12	0	48	1.40
16142047--16142079	17	1.9	17	100	0	66	45	6	30	18	1.73
16142049--16142089	17	2.6	16	88	11	59	46	2	34	17	1.61
16149990--16150064	30	2.5	30	82	4	98	42	6	2	48	1.43
16152994--16153044	22	2.3	22	80	12	68	58	0	3	37	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16153004--16153086	18	4.2	18	68	24	51	55	2	1	40	1.21
16153102--16153135	16	2.2	15	89	5	50	52	0	0	47	1.00
16161764--16161788	4	6.2	4	100	0	50	24	0	0	76	0.80
16165259--16165323	33	2.0	33	90	0	103	27	15	7	49	1.72
16167474--16167657	13	14.5	12	73	15	106	42	35	1	21	1.60
16167527--16167641	32	3.6	31	76	17	110	41	37	0	20	1.58
16167525--16167656	39	3.4	40	80	11	132	43	34	0	21	1.58
16167530--16167657	32	4.0	32	75	15	86	42	35	0	21	1.58
16167474--16167657	7	29.0	6	71	17	106	42	35	1	21	1.60
16168523--16168556	16	2.1	17	88	5	52	58	20	17	2	1.51
16179808--16179840	16	2.0	17	88	5	50	48	0	12	39	1.40
16181536--16181576	21	1.9	22	85	5	57	58	0	2	39	1.11
16181606--16181647	14	3.0	14	89	0	57	61	0	0	38	0.96
16183412--16183459	15	3.1	15	85	5	60	31	0	2	66	1.03
16186449--16186523	26	3.0	24	75	21	66	45	4	4	46	1.40
16186625--16186676	24	2.2	24	85	0	68	34	3	7	53	1.48
16191282--16191695	200	2.1	201	83	1	517	41	11	14	33	1.81
16194721--16194760	19	2.1	19	86	9	55	30	15	15	40	1.87
16196060--16196109	25	2.0	24	84	3	64	22	8	4	66	1.35
16202441--16202488	3	15.7	3	78	4	51	41	0	0	58	0.98
16202432--16202481	6	8.2	6	95	2	73	46	0	2	52	1.12
16203085--16203126	21	2.1	21	86	8	61	21	7	7	64	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16203867--16203948	32	2.4	34	80	11	89	41	15	12	30	1.84
16212453--16212494	14	3.1	14	79	6	50	2	16	0	80	0.81
16213167--16213936	200	3.8	200	81	3	861	40	10	13	34	1.80
16213167--16213948	400	2.0	401	83	3	1018	40	10	13	34	1.80
16215220--16215244	13	1.9	13	100	0	50	56	4	0	40	1.18
16217124--16217156	17	1.9	17	100	0	66	27	0	6	66	1.15
16217953--16218002	25	2.0	24	84	3	64	22	8	4	66	1.35
16223527--16223569	14	3.0	14	80	6	50	51	0	9	39	1.34
16224318--16224364	3	15.7	3	86	8	69	36	0	0	63	0.94
16224420--16224449	3	10.3	3	92	7	53	70	0	0	30	0.88
16225670--16225755	41	2.1	40	80	8	93	44	13	13	27	1.83
16225730--16225825	34	2.7	36	79	6	115	37	14	17	30	1.90
16235133--16235172	19	2.1	19	86	9	55	30	15	15	40	1.87
16236465--16236514	25	2.0	24	84	3	64	22	8	4	66	1.35
16242806--16242855	6	8.0	6	91	6	64	44	0	2	54	1.11
16243454--16243495	21	2.1	21	86	8	61	21	7	7	64	1.43
16244224--16244322	34	2.8	36	78	6	112	35	16	18	30	1.92
16256125--16256216	7	13.7	7	70	16	54	26	2	3	68	1.16
16256142--16256216	32	2.3	32	82	10	91	22	2	4	70	1.16
16256767--16256822	3	19.3	3	81	7	62	64	1	3	30	1.21
16256764--16256822	21	3.0	20	87	7	84	62	1	5	30	1.26
16256767--16256843	27	2.9	25	76	9	64	68	1	2	27	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16257258--16257332	37	2.1	37	97	2	143	57	13	8	21	1.61
16257339--16257375	18	2.0	20	89	10	60	18	0	5	75	0.99
16262234--16262276	4	10.2	4	80	9	50	67	0	30	2	1.03
16262234--16262276	17	2.6	16	92	7	68	67	0	30	2	1.03
16265061--16265104	2	22.0	2	100	0	88	50	0	0	50	1.00
16266733--16266762	14	2.1	14	100	0	60	50	6	0	43	1.28
16269446--16269488	12	3.6	12	83	0	50	4	16	44	34	1.68
16280270--16280500	115	2.0	115	98	0	444	35	16	16	30	1.92
16284198--16284570	41	9.2	40	76	9	278	28	10	16	44	1.80
16284223--16284556	81	4.1	81	79	4	316	27	10	17	44	1.81
16291813--16291854	16	2.6	16	82	10	50	0	2	30	66	1.04
16292679--16292704	2	13.0	2	100	0	52	50	0	0	50	1.00
16301350--16301384	16	2.1	17	89	5	54	68	0	0	31	0.90
16307233--16307257	11	2.3	11	100	0	50	20	44	8	28	1.79
16310009--16310033	12	2.1	12	100	0	50	16	0	0	84	0.63
16310449--16310718	132	2.0	132	89	0	414	17	31	23	27	1.97
16310092--16311089	503	2.0	503	86	2	1385	18	31	23	26	1.97
16312043--16312099	19	3.1	18	78	9	62	71	1	5	21	1.14
16312544--16312586	16	2.7	16	89	7	61	6	6	2	83	0.88
16312515--16312578	29	2.2	29	83	5	76	9	6	4	79	1.04
16312841--16312880	21	1.9	21	89	0	62	27	12	27	32	1.93
16313212--16313297	22	3.9	22	71	17	70	32	16	18	32	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16312801--16313265	126	3.7	125	78	6	431	33	13	16	36	1.89
16313405--16313474	32	2.2	32	86	0	95	20	15	28	35	1.93
16313612--16313693	22	3.7	22	80	9	87	26	15	24	32	1.95
16313605--16313743	44	3.1	44	76	6	136	24	16	27	31	1.96
16313639--16313746	22	4.9	22	82	2	99	25	17	26	30	1.97
16313988--16314053	25	2.6	24	81	11	69	31	7	16	43	1.76
16314048--16314126	41	1.9	41	81	0	95	37	13	15	32	1.87
16315219--16315488	145	1.8	150	81	7	347	18	14	9	57	1.65
16318403--16318432	12	2.6	12	94	5	53	33	0	0	66	0.92
16318430--16318570	3	45.7	3	72	17	78	28	3	2	65	1.20
16318441--16318567	24	5.1	25	80	11	127	28	3	2	66	1.19
16318453--16318570	48	2.5	47	84	5	157	27	3	1	66	1.17
16318908--16318944	19	2.0	19	89	5	58	21	10	18	48	1.78
16319427--16319474	3	15.7	3	91	4	78	29	0	2	68	1.01
16319630--16319664	14	2.5	14	85	0	52	68	0	0	31	0.90
16319580--16319779	73	2.8	71	84	9	259	50	3	8	37	1.50
16319735--16319884	55	2.6	55	79	11	142	44	8	12	35	1.72
16331364--16331483	42	2.9	41	82	13	122	25	10	14	49	1.75
16331412--16331881	42	11.1	43	78	10	461	24	13	18	44	1.85
16331430--16331882	86	5.4	85	80	9	487	24	13	18	43	1.86
16331430--16331896	128	3.7	128	86	4	617	24	13	18	43	1.86
16331706--16331853	81	1.8	79	91	2	242	22	14	18	45	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16331822--16331918	45	2.2	43	83	5	113	25	11	17	45	1.82
16331933--16331973	10	4.0	10	87	12	57	85	12	2	0	0.70
16331934--16331974	11	3.6	11	90	3	64	87	9	2	0	0.62
16331933--16331976	20	2.2	20	88	11	65	86	11	2	0	0.66
16332128--16332171	5	8.4	5	90	9	70	38	0	0	61	0.96
16332128--16332169	11	3.9	11	90	6	68	40	0	0	59	0.97
16332128--16332171	21	2.1	21	95	0	79	38	0	0	61	0.96
16332128--16332171	16	2.8	16	96	0	79	38	0	0	61	0.96
16332169--16332308	3	45.7	3	73	17	92	27	3	1	67	1.15
16332166--16332305	51	2.8	50	81	13	144	27	3	1	67	1.15

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121