genome.fa.s79.2.7.7.80.10.50.1000.55.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167904.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_17, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  21107920

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   

This is table  55  of  121  ( 14423 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9579821--9579859	20	2.0	20	85	10	53	35	0	5	58	1.20
9579922--9579973	20	2.5	22	81	12	56	50	1	3	44	1.31
9579940--9580103	39	4.3	37	72	16	104	46	1	1	50	1.20
9579931--9580001	35	2.1	35	82	12	85	47	0	4	47	1.21
9580841--9580887	20	2.3	20	85	10	60	48	0	6	44	1.28
9581228--9581269	18	2.6	16	79	17	50	40	2	0	57	1.12
9581455--9581498	19	2.3	19	85	14	56	45	4	0	50	1.22
9581442--9581530	44	2.1	44	81	8	103	47	3	1	48	1.26
9581505--9581564	2	32.0	2	74	12	56	48	1	1	48	1.21
9581483--9581572	15	6.2	14	71	20	62	45	1	1	52	1.15
9581944--9581989	21	2.2	20	88	3	65	47	2	0	50	1.13
9583037--9583124	33	2.4	36	81	10	92	47	3	0	48	1.18
9583074--9583124	16	3.1	15	81	13	57	45	1	0	52	1.12
9583237--9583276	20	2.0	21	85	5	55	52	2	2	42	1.28
9583281--9583329	23	2.2	22	82	10	55	34	4	6	55	1.44
9583368--9583411	13	3.4	13	84	9	54	50	0	0	50	1.00
9583369--9583421	9	5.8	9	78	10	54	50	0	1	47	1.12
9584012--9584053	21	2.0	21	81	9	50	54	0	0	45	0.99
9584253--9584285	18	1.9	17	88	11	50	42	6	3	48	1.43
9585671--9585704	13	2.7	13	90	4	52	47	2	0	50	1.16
9585679--9585719	20	2.0	20	86	9	57	46	2	0	51	1.14
9585698--9585741	13	3.1	14	87	9	54	43	0	0	56	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9586013--9586052	19	2.2	19	86	4	55	55	0	0	45	0.99
9586055--9586088	13	2.9	11	84	16	50	47	2	0	50	1.16
9586278--9586335	12	4.6	12	72	19	55	43	1	1	53	1.21
9586297--9586355	27	2.2	25	80	19	66	42	1	0	55	1.09
9586433--9586466	15	2.3	15	94	0	59	41	2	0	55	1.15
9586436--9586480	19	2.5	19	86	10	60	42	2	0	55	1.12
9586665--9586709	18	2.4	18	81	7	54	46	0	2	51	1.13
9586755--9586800	19	2.3	20	78	10	51	54	2	0	43	1.12
9587400--9587969	182	3.2	177	77	10	543	43	10	7	38	1.67
9588796--9588836	19	2.2	19	86	0	55	46	0	4	48	1.23
9588893--9588923	16	1.9	16	93	0	53	41	0	0	58	0.98
9589000--9589055	11	4.9	11	75	14	51	51	1	0	46	1.11
9589516--9589540	13	1.9	13	100	0	50	40	0	0	60	0.97
9589709--9589768	27	2.3	25	80	11	68	41	3	1	53	1.27
9590095--9590130	12	3.2	12	88	11	58	44	0	0	55	0.99
9590085--9590142	22	2.8	21	74	25	68	50	0	0	50	1.00
9590389--9590432	15	2.8	16	79	6	54	54	0	0	45	0.99
9590626--9590665	20	2.1	19	90	4	62	65	0	2	32	1.06
9590883--9590923	19	2.3	17	83	8	55	48	4	0	46	1.23
9591193--9591227	17	2.1	17	100	0	70	54	0	0	45	0.99
9591213--9591259	24	2.0	24	83	8	60	51	2	2	44	1.25
9592125--9592163	19	2.1	18	90	4	60	56	0	0	43	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9592495--9592542	14	3.2	15	82	14	55	45	0	2	52	1.12
9592496--9592542	16	2.9	16	81	18	62	44	0	2	53	1.12
9592633--9592680	16	3.3	14	78	18	53	60	4	2	33	1.27
9594152--9594524	180	2.1	180	81	5	432	41	9	8	41	1.68
9594651--9594996	182	1.9	182	85	1	478	39	6	10	43	1.67
9595043--9595625	181	3.2	179	77	7	502	41	9	10	38	1.72
9595719--9595764	19	2.3	20	85	14	69	39	4	2	54	1.32
9595993--9596036	19	2.2	20	84	11	56	36	4	2	56	1.32
9595997--9596047	23	2.2	23	82	6	59	39	3	1	54	1.30
9596461--9596519	29	2.0	30	86	6	84	47	3	0	49	1.18
9596503--9596551	13	3.6	14	77	17	50	48	0	2	48	1.12
9596599--9596650	22	2.2	25	83	10	74	55	0	0	44	0.99
9596599--9596643	17	2.6	17	82	6	56	55	0	0	44	0.99
9596698--9596756	21	2.7	21	84	5	73	45	5	3	45	1.42
9596847--9596910	20	3.3	19	76	20	60	50	4	1	43	1.32
9596843--9596949	42	2.5	43	78	17	116	48	3	3	43	1.38
9597014--9597078	20	3.4	20	77	12	64	47	3	0	49	1.17
9597030--9597082	17	2.8	20	77	16	67	49	1	0	49	1.12
9597518--9597582	24	3.0	21	70	16	60	49	1	0	49	1.10
9597518--9597616	46	2.2	43	81	16	114	50	2	0	47	1.12
9598371--9598400	12	2.4	13	94	5	53	50	0	0	50	1.00
9598296--9598401	51	2.2	48	76	11	108	44	0	0	54	1.06
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9598616--9598660	23	2.0	23	90	0	72	35	0	4	60	1.17
9599105--9599861	180	4.2	179	78	6	696	41	7	10	40	1.68
9599851--9599898	24	2.0	24	95	0	87	52	8	10	29	1.65
9600110--9601575	181	8.3	181	74	9	957	41	7	9	40	1.67
9600624--9600931	162	1.9	165	85	4	437	43	7	9	40	1.64
9600280--9601309	521	2.0	523	80	5	1190	40	7	9	42	1.65
9601333--9601854	278	1.9	278	81	3	629	41	8	10	38	1.71
9601813--9601868	18	3.2	17	75	17	53	46	5	8	39	1.58
9601572--9608116	181	36.6	181	74	9	3936	40	8	9	41	1.68
9603066--9603115	18	2.8	18	79	11	59	50	14	2	34	1.54
9601610--9606239	720	6.5	705	74	11	2007	40	8	9	41	1.68
9605837--9608179	182	13.1	180	74	8	1419	41	8	9	40	1.68
9607782--9608100	169	1.9	169	84	3	428	40	7	10	41	1.68
9608269--9608780	163	3.0	164	74	12	390	42	9	7	39	1.66
9608432--9609364	181	5.2	179	79	8	626	42	10	8	39	1.69
9608432--9609383	175	5.4	175	79	8	690	42	10	8	39	1.69
9609328--9609363	17	2.1	17	90	10	56	52	5	2	38	1.39
9610352--9611222	178	4.8	180	74	7	561	43	8	7	40	1.64
9610091--9611249	178	6.5	178	71	10	407	42	9	7	40	1.66
9611286--9611964	181	3.8	179	76	8	604	39	7	9	43	1.66
9611974--9615239	181	18.4	175	70	12	803	40	7	9	42	1.66
9611689--9612284	322	1.8	323	81	4	738	40	7	9	42	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9611974--9612482	180	2.9	179	81	5	561	42	7	8	41	1.64
9612515--9615315	181	15.6	181	75	7	1803	40	7	9	42	1.66
9612574--9614165	356	4.4	349	74	9	918	41	7	9	41	1.66
9612515--9618623	541	11.5	529	73	11	2055	40	7	9	42	1.67
9612707--9618717	181	33.8	172	70	12	961	40	7	9	41	1.67
9612593--9618701	358	17.2	358	70	12	1249	40	7	9	41	1.67
9615421--9616212	177	4.4	178	75	6	582	40	9	9	40	1.71
9615443--9615854	176	2.3	176	80	5	429	41	9	9	40	1.69
9616246--9618738	181	13.9	182	76	7	1906	40	8	10	41	1.68
9616246--9618707	539	4.6	538	78	7	2071	40	8	10	41	1.68
9618884--9619195	169	1.8	171	82	4	398	41	7	9	41	1.66
9619320--9620023	180	3.9	182	77	7	616	40	7	9	42	1.66
9619697--9620343	321	2.0	322	81	4	750	40	7	9	42	1.65
9620297--9620524	121	1.9	119	81	5	280	43	9	12	35	1.74
9625561--9627238	361	4.7	359	77	5	1503	39	9	10	41	1.71
9625531--9627238	181	9.5	180	77	5	1482	39	9	10	41	1.71
9627082--9627375	152	1.9	153	85	5	407	42	8	12	36	1.73
9627571--9627617	23	2.0	24	83	4	60	44	0	0	55	0.99
9627240--9630616	180	18.5	182	71	10	1679	41	7	10	41	1.67
9627241--9628425	357	3.3	355	80	5	1260	41	7	9	40	1.67
9628488--9628747	129	2.0	129	84	5	337	42	7	10	40	1.66
9628624--9629120	176	2.8	178	77	6	425	41	8	8	41	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9628998--9630115	537	2.1	536	80	5	1263	40	7	10	41	1.67
9628618--9630616	361	5.6	362	76	6	1307	40	7	10	41	1.67
9630636--9630681	18	2.6	19	83	13	62	43	13	2	41	1.55
9630641--9631287	181	3.6	179	78	5	642	39	9	8	42	1.69
9631171--9631406	120	2.0	119	85	2	321	34	11	8	46	1.69
9631012--9631582	301	1.9	301	83	5	733	38	10	8	43	1.68
9631304--9632587	180	7.2	173	76	11	672	41	10	8	39	1.69
9631304--9635924	181	25.7	181	74	9	3017	40	10	8	40	1.69
9632657--9632730	36	2.1	36	92	0	121	45	4	6	43	1.49
9632755--9633091	170	2.0	171	83	4	430	40	10	8	40	1.70

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121