genome.fa.s79.2.7.7.80.10.50.1000.78.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167904.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_17, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  21107920

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   

This is table  78  of  121  ( 14423 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13386757--13386801	3	14.7	3	81	4	54	33	4	2	60	1.29
13386828--13386915	37	2.4	36	88	7	124	19	15	27	37	1.92
13390728--13390752	13	1.9	13	100	0	50	88	0	4	8	0.64
13390963--13391072	43	2.6	43	83	2	132	39	17	15	28	1.90
13391188--13391466	98	2.8	97	83	3	344	40	21	13	24	1.89
13391442--13391609	42	4.0	42	78	0	174	41	21	9	27	1.84
13391419--13391609	84	2.3	85	77	3	208	41	21	9	27	1.85
13391773--13392091	137	2.3	137	90	3	493	43	14	13	29	1.82
13392040--13392122	43	1.9	43	90	4	132	39	18	14	27	1.89
13392343--13392431	35	2.6	34	82	7	101	35	11	14	38	1.82
13395097--13395144	21	2.3	21	89	3	71	25	14	14	45	1.83
13399780--13399835	8	7.6	7	78	21	53	83	0	16	0	0.64
13399780--13399834	28	1.9	29	88	3	85	83	0	16	0	0.64
13402427--13402489	33	2.0	31	81	12	74	22	19	6	52	1.68
13405770--13405827	22	2.7	22	81	7	66	75	1	15	6	1.09
13407300--13407514	111	1.9	110	82	4	263	22	13	25	38	1.91
13407298--13407514	37	5.9	37	80	4	233	23	13	25	37	1.91
13407721--13407767	12	3.9	12	78	8	51	23	0	8	68	1.17
13407733--13407790	19	3.0	19	75	9	64	15	0	12	72	1.12
13407759--13407788	15	2.0	15	93	0	51	13	0	10	76	1.01
13408812--13408852	18	2.3	18	87	8	57	12	2	7	78	1.06
13408811--13408853	19	2.3	19	80	15	54	11	2	6	79	1.02
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13409100--13409159	20	3.0	20	76	9	59	35	6	10	48	1.63
13410710--13410734	2	12.5	2	100	0	50	48	0	0	52	1.00
13410709--13410796	43	2.0	43	91	0	140	43	5	9	42	1.60
13412350--13412379	14	2.1	14	100	0	60	20	13	20	46	1.83
13419967--13420026	4	15.5	4	75	6	61	25	5	0	70	1.08
13419982--13420026	11	4.0	11	81	16	56	26	4	0	68	1.08
13421330--13421365	5	7.4	5	87	6	56	33	0	0	66	0.92
13421328--13421382	19	2.7	21	81	13	62	27	0	1	70	0.97
13421330--13421367	14	2.6	15	87	8	60	31	0	0	68	0.90
13421328--13421375	19	2.4	19	89	6	69	27	0	2	70	0.98
13422971--13423034	29	2.3	27	76	15	67	42	9	9	39	1.70
13423825--13423867	20	2.1	21	87	12	63	44	30	11	13	1.80
13427366--13427729	33	11.2	33	72	9	171	24	17	13	43	1.85
13427545--13427648	32	3.3	31	71	11	93	24	12	15	48	1.79
13427769--13428000	116	2.0	116	92	0	383	34	18	16	31	1.93
13429271--13429308	13	2.8	13	84	15	51	68	0	2	28	1.03
13433171--13433215	22	2.0	22	86	0	63	22	15	2	60	1.46
13434162--13434377	26	8.3	26	76	12	169	43	34	1	19	1.62
13434269--13434320	20	2.7	19	82	14	70	50	32	0	17	1.47
13434162--13434395	7	36.1	7	68	14	92	44	35	1	18	1.61
13434302--13434377	33	2.3	33	84	8	93	44	34	1	19	1.59
13434347--13434391	19	2.4	18	82	10	54	42	40	2	15	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13434357--13434395	19	2.0	20	95	5	71	46	41	2	10	1.51
13434269--13434395	26	4.8	26	70	14	84	45	35	0	18	1.55
13436057--13436209	38	4.1	38	76	11	145	36	18	9	35	1.83
13436061--13436208	37	4.0	37	77	6	129	36	18	9	35	1.84
13438543--13438607	9	7.0	9	86	6	76	80	0	20	0	0.72
13438553--13438606	19	2.7	21	83	16	71	83	0	16	0	0.65
13439787--13439880	12	8.1	11	71	16	50	72	3	20	4	1.16
13441568--13441936	71	5.2	70	79	4	364	29	13	11	45	1.79
13441571--13441896	34	9.1	36	68	12	145	30	13	10	45	1.77
13441598--13441866	143	1.9	143	82	3	344	31	14	11	43	1.80
13442185--13442899	83	8.7	83	74	6	416	28	18	12	40	1.87
13442183--13442534	124	2.9	122	80	6	388	28	19	12	39	1.88
13442177--13442785	165	3.7	165	77	4	494	29	18	12	40	1.87
13442522--13442805	124	2.3	124	79	8	310	29	16	12	41	1.85
13442187--13442903	41	17.4	41	72	7	310	28	18	12	40	1.87
13442975--13443013	21	1.9	20	89	5	60	84	7	2	5	0.84
13442975--13443045	14	5.4	12	73	17	52	81	12	1	4	0.90
13442968--13443045	20	3.9	19	79	12	77	80	14	1	3	0.91
13444469--13444526	22	2.7	21	81	2	62	22	15	1	60	1.44
13444481--13444527	22	2.1	22	88	0	67	21	14	2	61	1.43
13445419--13445586	7	24.9	7	71	16	86	46	32	0	20	1.56
13445443--13445517	19	3.9	19	79	13	82	52	29	1	17	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13445422--13445527	39	2.7	40	78	11	128	48	33	0	17	1.54
13446559--13446605	24	2.0	24	83	4	60	44	2	4	48	1.34
13446543--13446603	31	2.0	30	84	9	79	44	1	4	49	1.33
13447616--13447658	21	2.0	21	95	0	77	32	13	23	30	1.93
13448971--13449171	50	3.9	51	80	8	239	41	18	9	29	1.83
13448971--13449171	102	2.0	104	84	7	268	41	18	9	29	1.83
13451755--13451849	50	1.9	50	97	0	181	32	13	5	48	1.65
13463301--13463344	21	2.2	20	83	4	52	31	0	2	65	1.05
13463316--13463348	13	2.4	14	95	5	59	36	0	0	63	0.95
13464372--13464409	3	12.3	3	94	5	67	65	0	0	34	0.93
13465906--13465939	14	2.4	14	86	13	52	2	5	2	88	0.70
13471884--13472079	97	2.0	97	84	0	257	50	9	21	17	1.75
13474872--13474904	13	2.5	13	90	0	57	81	0	12	6	0.85
13474900--13474944	9	5.6	8	89	10	58	73	4	0	22	1.01
13474874--13474943	7	9.7	7	83	9	54	75	2	4	17	1.08
13504332--13504364	17	1.9	17	88	11	50	69	0	6	24	1.10
13504365--13504402	19	2.1	17	90	9	58	71	7	0	21	1.11
13516127--13516185	21	2.8	20	72	10	55	27	3	13	55	1.54
13518000--13518034	16	2.2	16	94	0	61	31	14	11	42	1.81
13518636--13518707	37	1.9	38	94	2	128	30	9	29	30	1.89
13522489--13522842	186	1.9	186	88	4	536	34	12	12	39	1.82
13522739--13522976	124	1.9	125	86	2	336	33	13	13	40	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13522848--13523480	240	2.6	238	78	8	706	33	12	12	40	1.81
13525745--13525789	21	2.1	21	84	8	56	28	0	6	64	1.19
13527444--13527712	126	2.1	127	78	6	287	32	16	13	36	1.88
13527749--13528246	125	4.1	124	74	14	390	32	15	13	37	1.87
13527377--13528091	303	2.3	303	84	4	949	34	15	13	36	1.87
13530553--13530597	20	2.3	19	77	11	54	53	0	0	46	1.00
13531958--13532028	30	2.4	31	88	4	101	28	28	11	32	1.91
13537484--13537546	14	4.6	13	83	14	65	82	1	12	3	0.86
13537487--13537536	14	3.5	14	88	2	73	84	0	14	2	0.72
13537484--13537533	19	2.7	18	87	12	66	84	0	14	2	0.72
13537484--13537534	20	2.6	18	81	12	57	84	0	13	1	0.71
13537484--13537557	34	2.2	34	83	9	89	81	1	14	2	0.88
13538842--13538884	22	2.0	22	95	4	79	76	0	9	13	1.01
13539604--13539661	22	2.6	22	83	5	82	25	20	22	31	1.98
13539931--13540010	22	3.6	22	81	8	92	31	21	15	32	1.94
13549330--13549431	18	5.6	17	72	17	57	49	11	6	32	1.66
13549330--13549415	17	4.8	17	71	16	59	47	10	6	34	1.65
13549739--13549838	32	3.4	32	69	25	112	53	12	8	27	1.65
13549764--13549806	22	2.0	22	90	0	68	53	9	9	27	1.63
13549695--13549857	54	3.0	54	88	1	229	52	12	7	28	1.65
13549696--13549858	20	8.6	20	67	27	74	51	12	7	28	1.66
13554454--13554585	71	1.9	70	85	1	183	39	19	15	25	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13558154--13558194	21	2.0	21	85	0	55	14	19	26	39	1.90
13559151--13559196	24	2.0	23	91	4	74	67	4	8	19	1.35
13559955--13559993	17	2.2	18	86	4	53	41	5	0	53	1.23
13559953--13560012	24	2.4	26	80	5	70	43	3	0	53	1.17
13560766--13560807	15	2.6	17	85	11	61	40	0	2	57	1.12
13566024--13566066	19	2.1	20	83	12	52	55	0	13	30	1.39
13578437--13578577	71	2.0	71	97	0	264	34	6	7	51	1.55
13580017--13580041	12	2.1	12	100	0	50	44	24	16	16	1.86
13582101--13582156	18	3.1	18	89	0	94	25	23	28	23	1.99
13584221--13584273	11	5.2	10	73	13	54	66	0	30	3	1.10

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121