genome.fa.s79.2.7.7.80.10.50.1000.66.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167904.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_17, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  21107920

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   

This is table  66  of  121  ( 14423 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11352255--11352299	23	2.0	23	86	8	65	82	0	15	2	0.77
11352876--11353032	25	6.2	25	80	5	163	30	14	7	48	1.70
11358650--11358833	95	1.9	95	88	0	278	40	6	9	42	1.64
11360743--11360812	34	2.1	34	97	0	131	24	15	18	41	1.89
11363372--11363465	44	2.1	45	88	5	138	32	17	2	47	1.59
11365366--11365427	4	16.0	4	80	6	74	69	3	1	25	1.13
11366613--11366653	20	2.0	20	95	0	73	58	14	7	19	1.59
11367997--11368137	74	1.9	72	97	2	264	50	7	7	34	1.59
11369289--11369353	13	4.9	14	83	9	66	18	0	36	44	1.50
11369279--11369318	19	2.1	19	90	0	62	15	0	37	47	1.45
11369298--11369373	13	5.7	13	82	11	82	15	0	38	46	1.47
11369302--11369353	27	1.9	27	88	7	79	19	0	34	46	1.50
11369282--11369369	6	13.5	6	68	15	50	14	0	40	44	1.46
11369392--11369479	43	2.0	43	88	0	131	47	13	11	27	1.77
11371675--11371701	14	1.9	14	100	0	54	14	44	14	25	1.84
11373910--11373957	25	1.9	25	83	8	62	47	10	14	27	1.76
11377456--11377489	3	11.7	3	93	6	61	29	0	0	70	0.87
11377900--11377962	31	2.0	31	87	6	92	23	25	22	28	1.99
11378024--11378068	19	2.4	19	80	0	54	22	28	22	26	1.99
11378287--11378324	5	7.6	5	82	11	51	21	44	34	0	1.52
11378354--11378384	16	1.9	16	93	0	53	12	0	6	80	0.89
11378413--11378698	156	1.8	157	96	0	529	29	14	17	37	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11381927--11381952	1	26.0	1	100	0	52	100	0	0	0	0.00
11382367--11382407	16	2.6	16	84	7	57	73	0	19	7	1.07
11383584--11384284	42	17.0	42	90	6	1010	22	17	23	37	1.94
11383584--11384284	83	8.5	82	91	4	1008	22	17	23	37	1.94
11383584--11384284	125	5.6	122	91	4	1041	22	17	23	37	1.94
11384291--11384412	1	122.0	1	79	0	109	87	8	0	4	0.65
11384296--11384396	25	4.0	24	83	8	121	88	8	0	2	0.62
11384604--11384650	15	3.5	13	78	16	51	29	0	2	68	1.02
11384595--11384707	20	5.6	22	68	25	65	30	0	5	63	1.16
11384722--11384752	3	10.7	3	93	6	55	29	0	0	70	0.87
11385165--11385227	31	2.0	31	87	6	92	23	25	22	28	1.99
11385552--11385589	5	7.6	5	82	11	51	21	44	34	0	1.52
11385673--11385958	156	1.8	157	96	0	529	29	14	17	37	1.90
11388824--11388905	42	2.0	41	84	13	109	34	4	15	45	1.68
11390632--11390799	47	3.5	49	74	15	163	42	13	13	30	1.83
11394855--11395021	20	8.5	19	72	13	81	19	7	31	41	1.78
11394915--11394970	21	2.8	18	78	19	58	16	5	33	44	1.70
11395026--11395088	25	2.5	25	78	0	72	17	0	36	46	1.49
11398604--11398655	24	2.1	26	85	7	72	44	38	0	17	1.49
11398621--11398714	38	2.5	37	79	10	93	44	32	1	21	1.59
11398795--11398828	13	2.7	12	86	13	50	55	29	0	14	1.40
11398821--11398964	13	11.6	13	69	16	101	47	38	0	14	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11398820--11398964	6	22.3	7	72	17	100	47	37	0	14	1.44
11398863--11398960	25	3.8	25	87	4	124	46	39	0	13	1.43
11398928--11398984	20	2.8	21	89	5	73	50	33	1	14	1.52
11400036--11400074	19	2.1	19	95	0	69	12	15	12	58	1.62
11401055--11401363	141	2.2	140	83	10	364	44	12	8	34	1.73
11401055--11401424	141	2.6	140	78	10	342	44	14	9	31	1.76
11410677--11410720	17	2.6	17	85	3	63	72	2	15	9	1.19
11414348--11414621	137	2.0	137	95	0	494	27	17	20	34	1.95
11421215--11421252	3	12.7	3	100	0	76	31	0	0	68	0.90
11422096--11422134	11	3.6	11	93	3	62	0	2	7	89	0.56
11422097--11422133	16	2.2	16	90	4	56	0	2	5	91	0.48
11422097--11422136	17	2.4	17	91	0	62	0	2	7	90	0.55
11430097--11430173	38	2.0	38	89	0	118	28	24	14	32	1.94
11445074--11445126	27	2.0	26	82	10	63	35	15	0	49	1.45
11446767--11446795	14	2.1	14	100	0	58	37	0	34	27	1.57
11451744--11451807	26	2.4	27	82	5	69	23	3	32	40	1.70
11451751--11451807	7	8.6	7	80	7	57	24	3	31	40	1.72
11451751--11451807	13	4.3	13	71	10	53	24	3	31	40	1.72
11451817--11451865	19	2.6	19	83	0	62	10	6	36	46	1.63
11451881--11451979	19	5.2	19	75	2	65	17	2	40	40	1.61
11451945--11451992	19	2.5	19	89	0	69	20	4	33	41	1.72
11451833--11452001	57	3.0	56	78	10	182	17	4	38	39	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11451947--11451998	19	2.7	18	82	5	50	19	5	30	44	1.74
11454408--11454577	57	3.0	57	80	3	162	38	19	13	28	1.90
11454547--11454617	34	2.1	34	89	0	106	47	19	11	21	1.80
11454659--11454864	83	2.5	81	76	8	195	44	16	10	28	1.80
11455261--11455301	21	1.9	22	85	5	57	24	24	0	51	1.49
11457201--11457238	19	2.0	19	89	0	58	5	13	2	78	1.02
11457189--11457247	28	2.0	29	83	6	75	5	15	1	77	1.01
11457218--11457301	38	2.4	33	76	20	80	5	14	0	79	0.90
11457251--11457296	20	2.2	21	84	7	67	6	13	0	80	0.89
11457743--11457788	23	2.0	24	86	4	67	8	21	0	69	1.15
11457744--11457814	8	8.4	8	70	11	52	5	19	0	74	1.01
11461031--11461159	36	3.6	35	77	6	123	36	10	20	31	1.88
11461040--11461179	73	1.9	72	80	7	158	37	11	18	32	1.87
11461445--11461481	14	2.7	14	91	4	58	5	5	5	83	0.90
11462291--11462330	21	2.0	19	85	9	53	30	7	0	62	1.23
11463546--11463614	19	3.6	19	75	7	77	17	2	36	43	1.64
11463473--11463557	7	12.7	7	74	9	52	21	1	36	41	1.61
11472360--11472560	97	2.1	97	94	0	357	36	24	20	18	1.95
11474383--11474445	21	3.0	22	72	15	69	38	12	9	39	1.76
11477729--11477754	13	2.0	13	100	0	52	53	7	7	30	1.57
11479562--11479833	135	2.0	135	91	1	438	46	15	9	28	1.77
11490296--11490735	176	2.7	161	89	7	625	22	16	15	44	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11492752--11492819	22	3.3	20	73	21	61	72	1	2	23	1.07
11492728--11492831	48	2.2	49	79	10	117	70	2	2	24	1.15
11492768--11492842	13	5.5	13	73	9	53	73	2	2	21	1.08
11492770--11492835	22	3.0	21	83	16	73	74	3	1	21	1.04
11493669--11493712	11	3.9	11	82	14	54	79	0	6	13	0.92
11493668--11493735	16	4.0	17	85	11	61	73	0	5	20	1.04
11493673--11493735	6	11.0	6	81	10	51	74	0	3	22	0.96
11493673--11493724	22	2.3	23	90	3	79	76	0	3	19	0.93
11493686--11493850	3	56.7	3	76	15	152	63	1	2	32	1.18
11502333--11502360	2	14.0	2	100	0	56	50	0	0	50	1.00
11502398--11502493	43	2.3	40	74	13	95	50	0	1	48	1.07
11504346--11504380	2	17.5	2	87	0	52	45	0	2	51	1.16
11505554--11505658	50	2.1	50	89	3	158	21	17	16	44	1.86
11510280--11510343	19	3.3	18	85	14	76	42	0	1	56	1.09
11510283--11510369	18	4.8	18	70	21	58	43	0	1	55	1.07
11510281--11510374	19	4.8	19	75	20	63	43	0	1	55	1.06
11510336--11510390	25	2.1	25	83	6	65	45	0	1	52	1.11
11514975--11515021	19	2.5	19	80	16	53	68	2	25	4	1.19
11516050--11516147	20	5.0	21	77	16	86	46	36	1	15	1.52
11516093--11516151	17	3.3	17	79	15	66	44	44	1	10	1.48
11516043--11516146	7	15.7	7	77	13	80	47	37	0	14	1.51
11516043--11516155	13	8.7	13	69	17	58	46	38	0	14	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11528385--11528437	4	12.8	4	78	21	56	50	0	24	24	1.49
11528385--11528436	18	2.8	18	94	5	86	51	0	25	23	1.48
11529071--11529225	55	2.9	52	85	5	186	22	14	10	52	1.71
11529071--11529302	52	4.4	51	82	6	187	24	12	11	51	1.73
11529213--11529344	51	2.6	51	79	3	131	28	16	13	40	1.87
11530691--11530761	28	2.4	30	86	9	110	73	5	15	5	1.21
11536330--11536388	17	3.4	17	76	11	57	30	8	10	50	1.66
11536371--11536451	20	3.8	20	70	22	65	30	2	8	58	1.42
11536371--11536508	47	3.0	45	84	7	179	31	2	9	56	1.46
11536376--11536505	24	5.5	24	71	18	112	30	3	10	56	1.47

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121