genome.fa.s79.2.7.7.80.10.50.1000.73.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167904.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_17, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  21107920

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   

This is table  73  of  121  ( 14423 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12648012--12648178	89	1.9	88	86	3	237	35	14	20	29	1.92
12653915--12654119	75	2.7	76	80	8	222	40	31	8	20	1.83
12653923--12654460	19	28.7	19	70	9	232	39	30	8	21	1.83
12654445--12654491	18	2.6	18	82	3	58	40	38	2	19	1.63
12654567--12654601	7	5.0	7	90	10	54	42	42	0	14	1.45
12654640--12654738	25	4.0	25	82	2	110	44	35	2	18	1.61
12654645--12654740	6	15.3	6	69	17	54	44	35	1	18	1.57
12654677--12654718	19	2.2	19	83	8	50	50	33	0	16	1.46
12663724--12663764	13	3.3	13	80	6	50	56	0	0	43	0.99
12665230--12665420	92	2.1	92	100	0	382	37	9	7	45	1.66
12666356--12666445	42	2.2	42	84	5	114	45	2	1	51	1.21
12666598--12666662	21	3.0	20	74	20	60	53	0	1	44	1.09
12666605--12666690	42	2.0	43	84	6	113	48	1	2	47	1.22
12666743--12666781	14	2.9	14	88	3	53	51	0	0	48	1.00
12666790--12666853	26	2.5	25	78	12	76	50	4	0	45	1.22
12666870--12666904	17	2.1	17	89	5	54	65	5	5	22	1.36
12666972--12667020	14	3.4	14	80	5	53	48	10	0	40	1.37
12666972--12667010	14	2.7	15	84	11	55	46	7	0	46	1.31
12668964--12669007	21	2.1	21	83	8	54	29	11	6	52	1.63
12675398--12675736	46	7.3	46	78	3	241	38	15	15	31	1.88
12675650--12675749	46	2.2	46	80	3	112	38	12	11	39	1.78
12684130--12684171	19	2.2	20	91	4	68	11	26	0	61	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12686956--12686981	3	8.7	3	100	0	52	34	30	0	34	1.58
12692126--12692169	20	2.2	20	83	4	52	27	18	15	38	1.91
12696866--12696897	8	4.2	8	84	15	50	37	0	0	62	0.95
12697120--12697162	16	2.7	16	81	0	50	65	4	2	27	1.25
12699379--12699474	30	3.2	29	79	8	86	37	12	4	45	1.61
12701458--12701517	30	2.0	30	83	0	75	30	25	8	36	1.85
12705065--12705111	17	2.8	17	83	6	51	40	27	6	25	1.80
12705079--12705159	28	2.6	32	77	14	82	46	29	3	19	1.67
12705384--12705410	14	1.9	14	100	0	54	40	7	7	44	1.60
12706201--12706238	9	4.2	9	83	9	51	81	0	5	13	0.85
12706201--12706238	19	2.1	19	95	5	69	81	0	5	13	0.85
12706257--12706311	24	2.2	25	84	9	78	30	12	9	47	1.73
12707211--12707440	37	6.3	37	74	4	153	36	21	9	33	1.85
12707211--12707306	35	2.7	36	86	3	131	36	22	9	31	1.86
12708997--12709082	14	5.8	14	70	20	59	69	5	4	19	1.27
12708991--12709081	33	3.0	31	85	10	109	69	6	5	18	1.31
12709001--12709082	42	2.0	42	83	9	105	69	6	4	19	1.28
12709031--12709100	19	3.5	19	80	9	68	74	4	5	15	1.17
12709513--12709599	41	2.1	41	83	8	106	54	25	1	19	1.52
12709539--12709599	20	2.9	21	76	18	65	57	24	0	18	1.40
12709533--12709586	20	2.7	18	78	18	54	59	24	0	16	1.37
12709925--12710114	3	67.3	3	75	13	82	53	2	8	34	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12709925--12710114	21	8.6	23	72	13	96	53	2	8	34	1.46
12709995--12710091	5	18.4	5	70	24	58	56	2	5	36	1.33
12710015--12710090	13	5.9	13	77	9	75	57	1	5	35	1.29
12710011--12710089	37	2.2	35	86	6	113	59	1	5	34	1.27
12710493--12710644	55	2.8	55	80	4	164	41	12	23	23	1.88
12716662--12716696	3	11.7	3	93	0	61	2	0	62	34	1.10
12716695--12716723	3	10.0	3	92	7	51	34	0	31	34	1.58
12716722--12716876	5	29.4	5	75	11	107	58	2	3	35	1.30
12716736--12716899	3	60.0	3	67	20	92	57	3	3	34	1.34
12716739--12716876	8	16.4	8	74	16	111	59	2	3	34	1.27
12716742--12716875	13	9.9	13	76	17	71	58	2	3	35	1.28
12718176--12718221	9	4.8	9	80	15	56	82	0	8	8	0.84
12719371--12719427	17	3.4	17	80	4	53	77	1	15	5	1.03
12719361--12719453	35	2.7	35	79	11	95	75	2	17	5	1.09
12719371--12719453	16	5.1	15	71	16	51	77	2	15	4	1.05
12721096--12721175	34	2.4	32	76	15	83	26	11	23	38	1.88
12721364--12721444	32	2.6	32	84	5	103	22	9	22	45	1.81
12721667--12721713	24	2.0	24	86	0	67	23	6	23	46	1.75
12721700--12721839	57	2.5	57	73	6	131	22	13	20	44	1.86
12721852--12722018	78	2.1	79	80	8	189	29	17	16	37	1.91
12722758--12722795	18	2.1	18	100	0	76	26	0	21	52	1.47
12726698--12726827	33	3.9	32	73	12	102	44	8	13	33	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12726705--12726832	67	1.9	67	81	7	154	43	9	13	33	1.76
12727806--12727861	18	3.1	19	82	12	64	16	0	35	48	1.46
12727831--12727877	18	2.6	18	86	0	58	14	2	34	48	1.56
12727939--12728010	27	2.7	27	79	10	76	23	0	26	50	1.50
12727953--12728117	7	25.7	6	69	19	52	24	1	27	46	1.60
12727953--12728018	20	3.3	19	78	16	62	24	0	27	48	1.51
12728063--12728108	20	2.4	18	85	10	56	23	4	32	39	1.75
12741908--12741983	32	2.3	32	75	6	82	31	10	22	35	1.88
12747661--12747707	9	5.1	9	84	5	67	61	10	0	27	1.29
12747661--12747707	19	2.5	19	96	3	87	61	10	0	27	1.29
12748744--12748774	16	1.9	16	93	0	53	80	0	19	0	0.71
12748742--12748782	14	3.1	14	83	16	52	82	0	17	0	0.66
12748781--12748831	3	17.3	3	87	4	77	66	0	1	31	1.03
12749028--12749384	50	7.3	49	83	5	382	39	17	13	29	1.88
12749028--12749384	98	3.6	98	86	1	484	39	17	13	29	1.88
12749041--12749384	148	2.3	147	81	4	424	38	18	14	29	1.89
12761764--12761827	31	2.1	31	85	2	85	71	1	0	26	0.94
12768675--12768767	47	2.0	48	91	2	152	29	5	23	41	1.76
12771777--12771812	6	5.8	6	87	6	54	13	5	0	80	0.88
12772272--12772501	7	32.7	7	67	20	65	48	2	2	46	1.28
12772329--12772411	12	7.1	12	67	24	61	51	0	3	44	1.18
12772322--12772387	19	3.6	19	77	8	82	56	0	1	42	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12772394--12772522	50	2.7	49	78	19	132	44	2	0	51	1.19
12772501--12772534	15	2.3	15	89	0	50	44	0	2	52	1.16
12772438--12772526	26	3.8	24	68	20	71	43	1	1	53	1.15
12772495--12772542	25	2.0	24	83	4	60	43	2	4	50	1.33
12772723--12772752	11	2.7	11	89	0	51	43	0	3	53	1.17
12773398--12773429	17	1.9	17	93	6	57	15	0	0	84	0.63
12774301--12774334	5	6.4	5	87	12	50	17	0	2	79	0.86
12774904--12774934	5	6.0	5	92	7	53	77	3	0	19	0.90
12774897--12774934	11	3.5	11	85	3	51	73	2	0	23	0.95
12778984--12779138	55	2.8	55	78	2	170	51	9	7	31	1.62
12778898--12779137	107	2.2	108	81	8	265	51	6	8	33	1.58
12778954--12779160	109	1.9	107	80	5	238	52	8	8	30	1.62
12779220--12779263	17	2.5	17	85	14	54	38	6	0	54	1.27
12781184--12781208	12	2.1	12	100	0	50	40	24	0	36	1.55
12784590--12784748	46	3.5	46	77	6	146	36	8	13	42	1.74
12784721--12784774	20	2.6	21	88	5	83	27	9	22	40	1.84
12784930--12784979	17	2.9	17	81	0	64	34	16	10	40	1.81
12784933--12785116	34	5.4	34	73	3	118	35	15	10	38	1.81
12785009--12785074	17	3.9	17	73	0	51	34	15	13	36	1.87
12785336--12785382	16	3.0	16	87	3	69	29	8	14	46	1.74
12785422--12785525	22	4.8	22	70	9	79	31	13	13	41	1.83
12786404--12786484	28	3.0	28	89	7	123	38	32	11	18	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12786406--12786485	25	3.1	25	90	5	115	40	31	10	18	1.84
12786920--12786958	20	2.0	20	100	0	78	43	0	46	10	1.37
12787323--12787616	109	2.7	105	78	8	281	48	7	8	35	1.62
12787295--12787616	54	5.9	54	76	9	257	50	6	9	33	1.61
12789129--12789170	19	2.2	19	87	8	59	2	2	23	71	1.10
12789270--12789311	19	2.2	19	91	8	68	78	0	0	21	0.75
12791924--12791965	16	2.8	16	85	7	61	83	0	11	4	0.79
12791930--12791997	25	3.1	21	80	14	59	76	1	16	5	1.05
12792341--12792380	20	2.0	21	85	14	57	30	10	15	45	1.78
12792540--12792573	17	2.1	17	88	5	52	17	11	8	61	1.54

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121