genome.fa.s79.2.7.7.80.10.50.1000.41.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167904.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_17, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  21107920

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   

This is table  41  of  121  ( 14423 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7214976--7215016	12	3.3	13	83	10	50	4	14	2	78	1.03
7215298--7215326	13	2.1	14	93	6	51	34	10	6	48	1.64
7218309--7218378	35	2.0	35	85	0	95	37	20	10	32	1.85
7240392--7240703	47	6.8	46	70	12	228	32	12	21	33	1.91
7240392--7240710	94	3.5	94	79	7	350	31	12	21	34	1.91
7240577--7240722	47	3.1	47	71	13	129	29	14	21	34	1.93
7241568--7241647	33	2.4	33	78	0	79	23	16	20	40	1.91
7241941--7241975	15	2.4	15	90	4	54	82	5	2	8	0.91
7242190--7242235	18	2.5	19	82	10	51	65	10	10	13	1.48
7245353--7245511	79	2.0	81	82	4	198	38	6	7	47	1.59
7245552--7245582	16	1.9	16	93	0	53	77	3	0	19	0.90
7246776--7246813	20	1.9	20	88	0	58	52	2	7	36	1.45
7252935--7252965	15	2.1	15	100	0	62	35	6	19	38	1.77
7254647--7254683	17	2.2	17	90	0	56	27	8	16	48	1.74
7258031--7258112	15	5.3	15	76	15	78	25	18	7	48	1.73
7258026--7258112	31	2.8	31	91	1	138	26	17	8	48	1.74
7263307--7263470	55	3.0	55	78	7	188	53	7	7	32	1.56
7267584--7267643	15	4.1	14	77	10	57	15	0	6	78	0.95
7267559--7267644	19	4.6	18	76	17	59	15	3	4	76	1.08
7267585--7267642	30	1.9	30	85	0	80	15	0	6	77	0.97
7267550--7267643	8	12.4	7	68	25	50	13	3	5	77	1.06
7268342--7268385	22	2.0	22	86	0	61	25	13	11	50	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7277993--7278034	22	1.9	22	85	0	57	35	9	9	45	1.69
7281949--7281992	22	2.0	22	86	8	63	38	6	6	47	1.57
7289424--7289458	18	1.9	18	88	0	52	37	25	14	22	1.92
7289899--7289940	22	1.9	22	90	0	66	50	9	7	33	1.62
7291475--7291631	80	2.0	80	96	0	287	25	17	6	50	1.69
7293502--7293537	1	36.0	1	94	0	63	0	2	0	97	0.18
7297600--7297648	18	2.7	18	77	0	53	69	6	0	24	1.11
7297616--7297673	25	2.3	25	85	5	82	62	6	0	31	1.22
7298218--7298264	18	2.6	18	83	10	51	21	2	4	72	1.12
7298578--7298667	37	2.4	39	78	12	98	22	4	4	68	1.25
7298619--7298660	18	2.3	19	83	4	50	26	4	2	66	1.23
7298583--7298674	38	2.6	33	75	20	80	22	4	3	69	1.21
7298746--7298818	30	2.4	29	82	10	85	28	4	6	60	1.41
7298760--7298818	32	1.9	30	86	6	82	32	3	6	57	1.41
7299794--7299847	25	2.1	26	82	3	65	27	16	3	51	1.61
7299831--7300629	215	3.7	213	74	8	531	33	9	5	52	1.55
7300582--7300632	20	2.5	21	81	12	61	33	3	5	56	1.42
7300892--7300921	9	3.2	9	95	4	51	63	0	0	36	0.95
7300894--7300923	10	3.1	10	95	4	53	63	0	0	36	0.95
7300891--7300937	19	2.5	20	76	16	55	59	2	0	38	1.09
7301215--7301251	15	2.4	16	82	17	51	37	13	0	48	1.43
7302636--7302682	18	2.5	18	83	13	51	31	2	2	63	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7302596--7303023	219	2.0	220	80	5	499	29	12	7	51	1.66
7305372--7305423	7	7.0	7	78	18	52	82	0	3	13	0.80
7305373--7305424	8	6.6	8	80	10	63	84	0	3	11	0.74
7305372--7305424	15	3.5	15	87	7	72	83	0	3	13	0.79
7305355--7305408	23	2.3	24	87	3	74	77	1	1	18	0.95
7305373--7305424	23	2.3	23	86	6	70	84	0	3	11	0.74
7306249--7306273	6	4.2	6	100	0	50	84	0	0	16	0.63
7306639--7306688	26	1.9	26	84	8	66	80	6	0	14	0.90
7307914--7307948	16	2.2	16	90	10	54	37	0	0	62	0.95
7314643--7314708	28	2.3	29	89	5	100	77	3	15	4	1.06
7314957--7314991	18	1.9	18	88	0	52	82	0	11	5	0.82
7316429--7316482	27	2.0	27	92	3	90	16	5	7	70	1.30
7316420--7316482	27	2.2	28	86	11	83	15	6	6	71	1.27
7316567--7316604	16	2.4	16	82	8	51	78	0	0	21	0.74
7316545--7316605	22	2.8	23	80	9	65	75	0	1	22	0.89
7317476--7317622	3	49.0	3	82	8	138	69	1	4	25	1.14
7317457--7317588	66	2.0	66	86	2	185	72	2	6	18	1.16
7317999--7318269	114	2.4	114	84	1	310	35	14	26	24	1.94
7326342--7326377	4	9.0	4	100	0	72	50	0	25	25	1.50
7329653--7329716	29	2.2	29	82	0	74	18	7	6	67	1.38
7329801--7329841	6	6.8	6	84	15	50	80	2	0	17	0.82
7329802--7329841	14	3.2	13	80	19	50	82	2	0	15	0.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7329808--7329850	19	2.2	19	84	12	52	81	2	2	13	0.89
7330229--7330258	9	3.2	9	95	4	51	66	30	3	0	1.07
7330776--7330809	3	11.3	3	100	0	68	64	0	0	35	0.94
7331263--7331322	20	3.0	20	85	2	75	50	25	5	20	1.68
7336629--7336688	28	2.1	28	93	6	104	26	18	11	43	1.84
7341376--7341407	14	2.1	16	88	11	50	81	0	3	15	0.82
7342810--7342868	20	2.9	20	79	2	64	50	20	5	23	1.67
7344309--7344349	18	2.3	18	91	0	64	53	7	4	34	1.50
7346784--7346834	22	2.4	22	86	3	68	11	1	5	80	0.97
7346786--7346815	16	1.9	16	93	6	53	10	0	3	86	0.67
7348372--7348420	21	2.3	21	75	6	55	8	34	4	53	1.50
7350225--7350254	16	1.9	15	93	6	51	76	0	10	13	1.01
7350326--7350404	29	2.9	27	76	10	72	62	6	6	25	1.43
7350541--7350575	14	2.4	14	90	4	52	88	0	2	8	0.61
7351346--7351386	17	2.4	17	83	0	55	48	4	0	46	1.23
7352371--7352477	56	1.9	56	98	0	205	36	16	13	33	1.88
7352433--7352573	70	2.0	70	93	2	239	31	20	14	32	1.93
7352652--7352705	2	27.5	2	90	3	74	55	0	0	44	0.99
7352659--7352698	21	1.9	21	100	0	80	60	0	0	40	0.97
7353745--7353782	17	2.2	18	81	13	53	28	0	2	68	1.03
7353749--7353785	17	2.2	17	90	4	58	27	0	2	70	1.01
7353736--7353790	22	2.5	21	83	13	67	25	1	1	70	1.06
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7353976--7354044	23	2.9	23	77	18	63	23	2	5	68	1.25
7359966--7360183	120	1.8	119	81	1	274	24	24	8	41	1.83
7359970--7360774	121	6.7	121	71	5	281	21	21	11	45	1.84
7360799--7360859	31	2.0	31	83	0	77	14	26	13	45	1.81
7360833--7360905	37	2.0	37	84	10	96	19	16	16	47	1.82
7361090--7361199	3	37.3	3	84	7	145	32	2	1	62	1.20
7362010--7362043	17	2.1	16	88	5	50	14	0	8	76	1.01
7363015--7363100	30	2.9	30	80	13	97	43	3	17	36	1.66
7363542--7363590	18	2.7	17	78	12	53	22	2	10	65	1.34
7363916--7363946	13	2.3	14	94	5	55	16	6	16	61	1.54
7364693--7364798	11	9.0	11	70	17	61	23	4	8	63	1.42
7364710--7364804	24	3.9	24	68	15	70	23	5	10	61	1.49
7364649--7364773	35	3.5	35	78	8	101	24	4	9	60	1.47
7365718--7365819	52	2.0	52	84	1	134	36	15	14	33	1.88
7368126--7368174	15	3.3	15	77	16	57	24	0	4	71	1.03
7368800--7368837	16	2.3	18	86	13	55	18	0	5	76	0.97
7368808--7368874	16	4.3	15	75	11	64	23	4	1	70	1.14
7370355--7370394	14	2.7	15	88	7	55	80	0	12	7	0.91
7371577--7371649	36	2.0	36	83	0	92	30	6	15	47	1.71
7371776--7371821	22	2.2	20	84	7	56	34	2	13	50	1.53
7371778--7371974	56	3.5	56	79	9	195	35	8	8	47	1.64
7371849--7371888	20	2.0	20	85	0	53	35	7	10	47	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7371777--7371954	56	3.1	57	80	8	202	37	7	9	45	1.66
7371945--7372019	36	2.1	35	85	9	98	26	13	9	50	1.71
7371968--7372030	18	3.5	18	77	0	72	28	14	11	46	1.78
7371968--7372070	40	2.7	40	79	5	97	27	12	14	45	1.81
7372090--7372146	18	3.2	18	76	0	60	31	17	10	40	1.84
7373689--7373842	24	6.3	25	75	10	122	29	3	9	57	1.49
7373691--7373830	36	3.8	35	80	13	140	29	4	10	56	1.51
7378930--7378963	12	2.8	12	90	0	50	17	0	23	58	1.38
7380751--7381006	135	1.9	135	82	5	320	37	11	14	36	1.82
7381442--7381478	20	2.0	20	89	10	60	48	0	0	51	1.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121