genome.fa.s79.2.7.7.80.10.50.1000.80.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167904.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_17, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  21107920

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   

This is table  80  of  121  ( 14423 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13703038--13703221	55	3.4	54	72	12	124	25	27	13	33	1.93
13703131--13703280	55	2.7	55	77	6	160	23	27	15	34	1.95
13713295--13713424	42	3.1	42	84	4	138	40	16	10	33	1.82
13713497--13713616	42	2.8	42	72	14	120	41	15	11	30	1.83
13713344--13713706	170	2.1	169	81	4	408	41	14	10	32	1.81
13713344--13713707	85	4.3	87	74	11	281	41	15	10	32	1.81
13714083--13714119	13	2.8	13	91	4	56	43	13	18	24	1.86
13714864--13714897	17	2.0	17	88	11	52	2	11	0	85	0.71
13714849--13714905	26	2.2	26	81	9	62	5	15	0	78	0.91
13717078--13717212	67	2.0	67	95	0	243	31	25	14	29	1.94
13718902--13719158	109	2.5	106	79	10	280	40	5	8	44	1.60
13721926--13721978	12	4.4	12	87	0	61	50	13	0	35	1.41
13721932--13721962	4	7.8	4	100	0	62	51	22	0	25	1.48
13725651--13725745	30	3.1	30	75	19	90	42	2	14	41	1.58
13726380--13726409	3	9.7	3	92	7	51	33	0	0	66	0.92
13726436--13726470	13	2.5	14	90	9	54	0	22	0	77	0.78
13726416--13726461	16	2.7	16	86	10	56	4	19	2	73	1.10
13727547--13727925	209	1.8	208	83	7	500	44	8	11	35	1.70
13739061--13739134	37	2.0	37	100	0	148	37	8	21	32	1.83
13739807--13739975	52	3.3	52	78	9	186	28	10	23	37	1.88
13739759--13740072	49	6.6	48	72	17	228	29	11	21	36	1.89
13739758--13739975	101	2.2	100	85	5	280	28	11	21	38	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13740294--13740345	12	4.7	11	75	15	54	0	17	1	80	0.80
13740305--13740344	13	3.0	13	85	7	53	0	15	0	85	0.61
13740314--13740346	11	2.8	12	86	9	50	0	21	0	78	0.75
13740313--13740362	12	3.9	13	77	15	50	0	26	0	74	0.83
13740731--13740765	13	2.6	13	90	4	52	82	14	0	2	0.77
13742699--13742727	5	5.8	5	100	0	58	41	0	0	58	0.98
13754087--13754150	24	2.6	25	87	5	94	26	3	7	62	1.38
13754091--13754159	24	3.0	22	85	10	77	26	4	10	59	1.48
13755471--13756041	287	2.0	288	91	1	939	41	15	19	22	1.90
13756510--13756574	30	2.3	28	84	7	78	72	7	1	18	1.17
13756564--13756609	15	3.2	15	75	12	60	80	13	0	6	0.89
13758009--13758058	16	3.2	16	77	5	66	50	32	0	18	1.47
13758010--13758061	15	3.4	15	81	2	68	46	36	0	17	1.48
13758009--13758075	14	4.5	14	75	7	53	46	34	0	19	1.50
13758187--13758221	12	2.8	12	86	4	52	37	37	0	25	1.57
13770697--13770868	35	4.8	36	74	13	88	23	15	12	48	1.80
13770603--13771575	109	8.9	109	83	2	1174	20	19	12	46	1.82
13770603--13771568	218	4.4	218	89	2	1388	21	19	12	46	1.82
13770579--13771568	327	3.0	324	85	2	1324	20	19	12	46	1.82
13771555--13771811	105	2.4	105	85	5	349	20	17	13	48	1.80
13771611--13772093	245	2.0	245	92	0	806	21	18	13	46	1.82
13771856--13772056	105	1.9	106	88	6	311	19	19	14	46	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13772487--13772561	11	7.1	11	71	22	63	76	10	1	12	1.10
13772502--13772568	28	2.4	28	90	5	100	79	10	1	8	1.01
13777000--13777056	21	2.7	21	88	2	78	29	21	22	26	1.99
13778185--13778236	23	2.4	21	83	6	59	34	5	15	44	1.70
13778436--13778591	36	4.3	35	77	4	116	28	7	12	51	1.66
13778481--13778625	18	8.0	17	72	11	94	31	6	10	52	1.60
13778617--13778679	22	3.0	22	84	11	78	31	11	15	41	1.83
13779874--13779908	17	2.1	17	89	10	54	34	0	2	62	1.10
13782127--13782183	29	2.0	29	89	3	89	38	5	0	56	1.22
13785567--13785603	14	2.6	14	86	0	56	56	2	0	40	1.13
13787500--13789997	630	4.0	629	96	1	4433	34	9	9	46	1.67
13791617--13791665	22	2.2	23	85	3	64	10	6	6	77	1.11
13791692--13792321	46	14.0	45	76	11	481	44	11	11	32	1.77
13791700--13792319	133	4.6	136	76	9	522	44	11	11	33	1.76
13792888--13792933	13	3.4	14	80	13	53	0	19	0	80	0.71
13793283--13793481	79	2.5	79	78	6	179	34	12	18	35	1.88
13793367--13793534	79	2.1	79	80	7	182	35	13	17	33	1.90
13793582--13793761	40	4.4	40	68	16	111	37	11	13	36	1.82
13793430--13793713	121	2.4	118	82	4	327	37	12	14	35	1.84
13793495--13793759	121	2.2	120	81	4	302	38	12	12	36	1.80
13793410--13793778	121	3.1	120	79	4	300	36	12	14	36	1.85
13800522--13800551	15	2.0	15	93	0	51	30	20	3	46	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13801097--13801127	11	2.7	12	90	10	55	0	12	0	87	0.55
13803609--13803655	5	9.0	5	82	13	51	78	4	0	17	0.90
13803608--13803654	6	7.7	6	77	13	51	80	4	0	14	0.85
13803603--13803654	27	1.9	27	84	7	70	80	3	0	15	0.85
13803603--13803643	13	2.9	14	86	13	50	80	4	0	14	0.87
13803993--13804205	18	11.8	18	66	18	97	43	30	3	22	1.69
13803993--13804274	13	22.5	13	64	20	70	43	30	3	23	1.69
13804092--13804129	20	1.9	20	88	0	58	47	31	0	21	1.51
13803993--13804146	7	25.0	6	67	18	59	44	31	2	21	1.66
13804114--13804205	19	4.9	19	73	13	84	43	30	3	22	1.69
13804195--13804253	25	2.3	26	82	2	75	44	30	1	23	1.64
13805287--13805541	129	2.0	131	82	3	318	26	13	20	40	1.89
13811959--13812000	14	3.1	13	89	6	57	78	0	11	9	0.96
13811959--13812000	13	3.2	13	89	3	57	78	0	11	9	0.96
13813174--13813212	17	2.3	17	86	0	51	71	0	17	10	1.12
13814606--13814748	60	2.4	60	80	0	160	34	13	18	32	1.91
13814975--13815049	15	4.7	15	73	15	53	69	4	5	21	1.25
13815009--13815060	21	2.4	22	83	3	70	69	1	5	23	1.20
13815082--13815126	15	2.8	16	90	6	65	68	2	4	24	1.19
13817151--13817313	25	6.7	25	72	20	91	41	33	1	22	1.65
13817176--13817320	12	12.0	12	74	15	88	41	33	1	23	1.63
13817185--13817507	36	8.7	36	67	20	152	42	33	0	23	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13817244--13817306	5	11.0	5	78	21	54	41	36	0	22	1.54
13817350--13817513	7	25.4	7	70	14	79	43	34	0	21	1.53
13817350--13817506	13	12.2	13	70	14	51	43	35	0	21	1.53
13817185--13817513	18	18.0	20	68	20	115	42	33	0	23	1.60
13821318--13821369	11	4.7	11	85	0	59	65	17	7	9	1.45
13821839--13821888	25	2.0	26	84	4	66	40	0	0	60	0.97
13824973--13825050	33	2.5	33	89	6	117	46	6	12	34	1.68
13830805--13830834	13	2.3	13	94	0	51	50	0	0	50	1.00
13830830--13830876	22	2.1	22	88	0	67	53	8	4	34	1.51
13831535--13831593	29	2.0	29	86	0	82	20	1	16	61	1.44
13831588--13831698	38	2.9	38	93	1	195	5	17	15	62	1.50
13842070--13842133	23	2.5	25	76	21	62	59	1	4	34	1.28
13843127--13843273	15	9.8	15	88	0	195	19	0	61	17	1.38
13843127--13843273	45	3.3	45	91	0	231	19	0	61	17	1.38
13843145--13843244	6	16.2	6	72	6	56	20	0	62	18	1.34
13846658--13846692	4	8.8	4	93	0	61	48	22	0	28	1.51
13847387--13847430	4	9.8	5	92	7	53	0	13	0	86	0.57
13847387--13847430	10	4.9	10	86	13	53	0	13	0	86	0.57
13849369--13849429	11	5.7	10	79	12	59	81	3	11	3	0.92
13849369--13849430	16	3.9	15	75	12	52	82	3	11	3	0.91
13849369--13849418	21	2.3	21	80	12	57	82	4	14	0	0.82
13849655--13849797	44	3.2	43	77	14	153	36	17	12	33	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13849658--13849812	48	3.3	47	78	13	160	36	17	12	33	1.88
13850071--13850664	75	7.8	75	83	3	686	39	22	15	22	1.91
13850071--13850664	225	2.6	225	85	3	769	39	22	15	22	1.91
13850505--13850650	42	3.5	42	82	1	195	39	24	15	20	1.92
13850969--13851057	35	2.6	35	87	5	128	34	11	15	38	1.83
13852625--13852676	26	2.0	26	81	7	61	11	9	3	75	1.18
13852638--13852692	21	2.6	21	85	8	67	9	7	3	80	1.02
13852646--13852707	31	2.0	32	84	9	83	6	12	4	75	1.15
13855296--13855360	27	2.6	24	77	15	69	26	6	1	66	1.24
13855296--13855381	17	5.1	18	78	10	67	25	6	1	66	1.24

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121