genome.fa.s79.2.7.7.80.10.50.1000.26.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167904.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_17, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  21107920

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   

This is table  26  of  121  ( 14423 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4586873--4586917	22	2.0	22	95	0	81	17	4	20	57	1.56
4588456--4588603	74	2.0	74	98	0	287	27	15	21	35	1.94
4593226--4593284	15	4.1	16	68	26	51	72	3	3	20	1.13
4593241--4593283	9	4.9	9	80	5	52	72	4	2	20	1.14
4593230--4593298	26	2.7	26	100	0	138	73	2	4	18	1.12
4594952--4594989	18	2.1	18	95	0	67	23	10	13	52	1.71
4602380--4602567	15	12.4	15	73	11	134	20	1	32	45	1.60
4602416--4602534	16	7.8	16	74	21	64	21	0	33	43	1.59
4602826--4602856	14	2.2	14	100	0	62	32	0	0	67	0.91
4602931--4602990	17	3.6	17	76	15	54	73	1	1	23	1.01
4604038--4604108	3	24.0	3	72	16	51	38	0	1	60	1.06
4604460--4604543	34	2.5	35	78	11	93	50	11	17	20	1.78
4604522--4604808	134	2.1	135	85	1	378	44	12	20	22	1.85
4604577--4604889	134	2.3	132	80	4	304	45	12	21	20	1.84
4604869--4605045	72	2.4	72	81	7	180	44	15	20	19	1.86
4606072--4606108	16	2.3	16	90	9	58	13	0	5	81	0.86
4617476--4617589	15	7.6	15	75	7	97	19	0	33	46	1.56
4617476--4617591	59	2.0	60	86	5	164	18	0	32	47	1.55
4617513--4617592	14	5.4	14	75	8	61	18	1	36	43	1.58
4617534--4617648	31	3.5	31	75	17	86	20	0	32	46	1.51
4617596--4617652	16	3.5	17	73	20	59	22	0	31	45	1.53
4617558--4617633	39	1.9	39	89	5	118	22	0	31	46	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4617558--4617642	39	2.2	37	85	10	109	22	0	31	45	1.52
4617593--4617666	32	2.3	30	78	17	78	24	2	28	44	1.67
4617904--4617933	3	10.0	3	100	0	60	33	0	0	66	0.92
4619189--4619227	18	2.2	18	85	0	51	61	2	5	30	1.31
4619736--4619792	17	3.4	16	77	13	53	43	3	3	49	1.36
4619784--4619880	30	3.3	29	74	17	94	44	0	7	48	1.30
4620291--4620320	9	3.2	9	95	4	51	63	0	0	36	0.95
4620293--4620322	10	3.1	10	95	4	53	63	0	0	36	0.95
4621140--4621183	19	2.4	19	88	3	63	72	4	2	20	1.13
4623727--4623776	23	2.2	23	100	0	100	38	12	12	38	1.80
4624103--4624438	186	1.8	186	83	6	448	40	6	11	41	1.66
4625240--4625287	25	1.9	25	95	0	87	20	8	27	43	1.80
4628372--4628434	30	2.1	31	84	3	83	52	4	3	39	1.38
4637882--4638204	7	45.4	7	68	17	100	50	34	0	13	1.47
4637886--4638197	19	16.7	19	70	18	117	50	35	0	14	1.48
4637882--4638012	40	3.3	39	75	20	112	52	35	0	11	1.43
4637903--4638197	52	5.4	52	74	12	184	50	34	0	14	1.48
4637935--4638010	33	2.3	33	82	13	86	55	34	1	9	1.40
4637871--4638136	26	10.3	26	69	19	139	50	34	0	13	1.47
4638084--4638126	20	2.1	20	86	4	59	51	37	0	11	1.39
4637955--4638198	128	1.9	129	80	9	293	49	35	0	14	1.47
4638059--4638105	17	3.3	14	80	20	53	48	34	0	17	1.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4645760--4646223	156	2.9	160	92	1	765	38	17	14	29	1.90
4646255--4646279	1	25.0	1	100	0	50	100	0	0	0	0.00
4646287--4646341	15	3.5	16	85	9	69	1	34	43	20	1.62
4646299--4646341	5	8.6	5	85	10	61	0	34	44	20	1.52
4646287--4646348	15	4.0	15	78	4	61	3	32	45	19	1.66
4646562--4646605	19	2.3	19	84	0	61	22	20	29	27	1.99
4646667--4646739	31	2.4	31	83	4	85	28	21	24	24	1.99
4647055--4647086	11	2.8	12	86	13	50	81	0	0	18	0.70
4647314--4647348	18	1.9	18	88	11	54	85	0	0	14	0.59
4647317--4647352	7	5.1	7	87	12	56	83	0	0	16	0.65
4647385--4647449	20	3.2	20	88	0	85	21	30	30	16	1.96
4648874--4648923	23	2.2	23	100	0	100	38	12	12	38	1.80
4650467--4650514	25	1.9	25	95	0	87	20	8	27	43	1.80
4650497--4650826	163	2.0	163	98	0	633	22	21	20	35	1.96
4653451--4653527	30	2.5	30	82	4	82	50	5	2	41	1.38
4659674--4659702	2	14.5	2	100	0	58	51	0	0	48	1.00
4662970--4663167	7	28.7	7	67	23	52	52	32	1	14	1.49
4663019--4663339	7	45.4	7	67	18	73	51	34	0	14	1.47
4663008--4663291	26	10.8	26	70	18	126	51	33	0	14	1.48
4663044--4663081	18	2.1	19	95	5	69	55	26	0	18	1.43
4663064--4663150	39	2.2	38	84	8	104	55	32	1	11	1.43
4663189--4663225	17	2.1	18	95	5	67	51	32	0	16	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4663219--4663261	20	2.1	20	86	4	59	51	37	0	11	1.39
4663091--4663333	128	1.9	128	81	8	298	50	34	0	14	1.46
4663194--4663240	17	3.3	14	80	20	53	48	34	0	17	1.47
4675245--4675417	35	4.9	35	74	3	105	19	17	12	50	1.76
4675372--4675799	35	12.3	34	70	8	130	21	15	10	52	1.72
4675385--4675501	34	3.4	34	76	12	96	22	17	11	48	1.79
4675544--4675736	105	1.8	105	84	4	264	20	15	10	53	1.71
4675541--4675737	70	2.8	70	82	4	211	20	15	10	52	1.72
4675946--4676012	20	3.6	18	86	8	82	86	8	1	2	0.73
4675945--4676022	21	3.7	20	83	8	93	84	10	1	3	0.80
4675945--4676013	1	69.0	1	75	0	57	86	8	1	2	0.72
4675945--4676012	12	5.5	12	78	13	75	86	8	1	2	0.73
4675946--4676013	30	2.2	30	87	10	93	86	8	1	2	0.73
4676862--4676900	20	2.0	20	84	0	51	20	7	5	66	1.36
4678356--4678414	21	2.8	21	82	12	59	27	23	3	45	1.68
4682300--4682341	21	2.0	21	86	9	59	73	0	9	16	1.08
4682312--4682352	21	1.9	21	85	5	55	78	0	9	12	0.98
4683229--4683268	20	2.0	20	90	4	64	42	2	5	50	1.37
4683373--4683415	21	2.0	21	81	0	50	32	13	9	44	1.76
4686293--4686474	4	45.2	4	70	19	71	28	1	3	66	1.17
4686293--4686331	17	2.4	16	86	4	51	25	2	2	69	1.14
4686990--4687033	20	2.1	21	83	4	54	29	22	13	34	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4687059--4687102	18	2.3	20	80	7	56	54	0	45	0	0.99
4687355--4687403	23	2.1	24	84	3	64	12	2	6	79	0.99
4687437--4687504	6	11.2	6	75	19	52	14	4	1	79	0.96
4687430--4687497	10	6.7	10	77	13	59	14	4	1	79	0.96
4687430--4687491	11	6.3	9	77	17	54	12	4	1	80	0.94
4687361--4687497	21	6.5	21	67	14	59	16	3	5	75	1.13
4687437--4687494	18	3.3	18	85	2	82	13	3	1	81	0.91
4687440--4687504	26	2.3	29	84	7	82	13	4	1	80	0.95
4687514--4687865	59	5.9	58	86	9	453	46	7	11	34	1.69
4689801--4689826	2	13.0	2	100	0	52	50	0	0	50	1.00
4690283--4690315	2	16.5	2	100	0	66	48	0	0	51	1.00
4698852--4698879	2	14.0	2	100	0	56	50	0	0	50	1.00
4700445--4700490	24	1.9	24	86	0	65	39	6	2	52	1.40
4703418--4703483	27	2.4	28	77	20	77	22	4	7	65	1.37
4703950--4703980	15	2.1	15	100	0	62	38	6	12	41	1.69
4707190--4707242	18	2.9	18	83	5	63	47	0	1	50	1.12
4707193--4707248	18	3.1	18	82	5	51	46	0	1	51	1.11
4712172--4712217	22	2.1	22	87	0	65	41	0	0	58	0.98
4714743--4714811	36	1.9	35	85	2	93	46	0	2	50	1.16
4715924--4715981	30	1.9	30	89	6	91	41	18	12	27	1.86
4716298--4716332	17	2.1	17	88	0	52	31	20	2	45	1.65
4719142--4719175	10	3.4	10	88	11	52	55	14	0	29	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4719609--4719647	6	7.0	6	88	11	57	71	0	12	15	1.14
4720246--4720280	16	2.1	17	89	5	54	28	5	5	60	1.43
4721927--4721972	22	2.1	22	84	8	58	36	8	4	50	1.53
4722509--4722547	21	1.9	21	85	15	55	48	12	10	28	1.74
4729759--4729818	21	2.7	22	74	7	59	40	0	0	60	0.97
4729761--4729828	27	2.6	26	78	17	70	35	0	0	64	0.94
4731128--4731176	3	15.3	3	80	19	55	65	0	0	34	0.93
4731127--4731207	8	9.6	9	69	23	52	62	3	0	33	1.12
4731129--4731185	11	5.4	11	79	12	57	63	1	0	35	1.05
4731129--4731240	15	7.6	15	67	22	60	62	4	0	32	1.21

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121