genome.fa.s79.2.7.7.80.10.50.1000.35.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167904.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_17, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  21107920

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   

This is table  35  of  121  ( 14423 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6257405--6257772	71	5.2	71	76	6	264	15	17	14	52	1.75
6257408--6257773	36	10.3	36	70	13	159	15	18	14	52	1.75
6257509--6257790	36	7.9	36	71	10	184	14	19	15	49	1.79
6257723--6257806	36	2.4	36	85	2	107	16	20	11	51	1.76
6257530--6257806	107	2.6	107	82	6	305	15	19	15	50	1.78
6257764--6257849	45	1.9	45	87	0	127	17	16	11	54	1.70
6257727--6257887	81	2.0	81	80	7	184	14	18	13	53	1.73
6257809--6257921	36	3.1	36	78	8	88	14	16	15	53	1.72
6257620--6257976	188	1.9	188	79	10	399	15	19	15	49	1.79
6258040--6258116	35	2.2	35	83	6	93	20	11	12	54	1.69
6263606--6263659	24	2.2	24	76	0	63	11	5	53	29	1.59
6263645--6263713	33	2.1	33	86	5	95	10	5	56	27	1.55
6265444--6265489	19	2.4	19	82	10	58	19	4	2	73	1.10
6267897--6267973	29	2.7	29	84	10	104	59	1	2	36	1.19
6269497--6269534	20	2.0	20	89	5	60	31	2	0	65	1.06
6270431--6270467	19	1.9	19	94	0	65	45	0	5	48	1.25
6273666--6273706	15	2.7	16	85	7	50	26	0	29	43	1.55
6274013--6274062	21	2.4	21	77	12	57	52	8	2	38	1.43
6275099--6275196	3	32.3	3	93	4	162	36	0	0	63	0.95
6275654--6276065	203	2.0	202	88	4	607	45	12	19	21	1.84
6275642--6276065	102	4.2	101	87	3	559	45	12	19	21	1.84
6285823--6285930	40	2.7	41	90	7	168	26	17	13	41	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6286133--6286184	13	3.9	12	79	16	50	19	0	5	75	1.01
6292492--6292765	35	7.7	36	75	4	144	16	17	13	52	1.75
6292493--6292589	36	2.7	35	80	3	104	17	16	10	55	1.68
6292506--6292839	71	4.7	69	75	5	242	16	17	13	52	1.74
6292527--6292908	36	10.7	36	73	8	210	16	18	14	51	1.77
6292631--6292908	108	2.6	106	82	6	321	15	18	14	50	1.78
6292866--6292951	45	1.9	45	87	0	127	17	18	11	52	1.74
6292830--6292989	81	2.0	81	82	2	196	15	20	13	51	1.76
6292946--6293023	36	2.2	37	81	6	97	14	20	15	50	1.78
6293142--6293218	35	2.2	35	83	6	93	20	11	12	54	1.69
6293326--6293408	35	2.4	33	78	9	85	21	16	13	48	1.81
6298624--6298677	24	2.2	24	86	0	81	11	3	55	29	1.52
6300458--6300501	18	2.4	19	81	11	56	20	4	2	72	1.13
6300874--6300899	2	13.0	2	100	0	52	50	0	0	50	1.00
6302817--6302891	30	2.5	30	89	6	116	41	13	0	45	1.43
6302947--6303033	30	3.0	28	80	6	86	60	4	2	32	1.29
6304564--6304599	13	2.8	13	86	0	54	38	0	0	61	0.96
6304554--6304593	20	2.1	20	90	9	66	40	0	0	60	0.97
6305489--6305525	19	1.9	19	94	0	65	45	0	5	48	1.25
6310236--6310272	14	2.6	15	83	8	51	70	24	2	2	1.14
6311340--6311432	14	6.5	13	74	15	60	51	32	0	16	1.44
6311355--6311394	16	2.7	15	88	7	55	55	27	0	17	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6313658--6313686	14	2.1	14	100	0	58	20	0	0	79	0.74
6315077--6315112	2	18.0	2	100	0	72	50	0	0	50	1.00
6315705--6315746	11	3.8	11	84	9	50	42	0	2	54	1.13
6322680--6322852	94	1.8	94	85	4	242	47	5	10	35	1.63
6331246--6331662	215	1.9	214	89	0	647	30	14	22	32	1.93
6333867--6333918	3	17.3	3	100	0	104	65	0	0	34	0.93
6335416--6335452	19	1.9	19	88	0	56	43	13	2	40	1.58
6336196--6336437	91	2.6	92	78	11	246	40	2	4	52	1.35
6337554--6337615	33	2.0	33	87	9	94	8	46	3	41	1.49
6337659--6337714	21	2.7	21	85	0	67	32	23	32	12	1.92
6337668--6337728	21	2.9	21	87	0	77	34	21	32	11	1.89
6341154--6341196	22	2.0	22	90	0	68	41	20	16	20	1.90
6352246--6352276	3	10.3	3	100	0	62	67	0	0	32	0.91
6352276--6352308	12	2.5	14	85	14	52	51	0	12	36	1.39
6352246--6352312	22	3.3	20	82	12	68	59	0	5	34	1.22
6352823--6353202	111	3.4	113	77	5	301	34	13	20	32	1.91
6353116--6353180	22	2.9	23	79	4	78	32	16	26	24	1.96
6353647--6353689	22	2.0	22	82	17	54	37	11	23	27	1.89
6353623--6353697	18	4.2	18	70	0	60	41	12	21	25	1.87
6358742--6358799	30	1.9	30	96	0	107	15	12	27	44	1.82
6361500--6361793	146	2.0	145	87	2	421	26	19	14	39	1.90
6362489--6362528	20	2.0	20	90	0	62	25	0	5	70	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6362551--6362604	21	2.4	24	82	17	71	57	3	1	37	1.27
6363640--6363674	10	3.4	10	84	7	52	37	0	0	62	0.95
6374902--6374945	2	22.0	2	100	0	88	50	0	50	0	1.00
6375530--6375565	19	1.9	18	88	5	54	19	2	0	77	0.88
6376371--6376413	22	2.0	22	81	9	52	51	4	4	39	1.44
6377314--6377363	18	2.5	20	84	9	59	70	6	10	14	1.33
6377532--6377561	3	10.0	3	100	0	60	33	0	0	66	0.92
6378593--6378634	21	2.0	22	86	13	61	54	2	0	42	1.13
6380967--6381004	3	12.7	3	100	0	76	68	0	0	31	0.90
6386393--6386586	59	3.4	56	77	12	189	50	7	9	33	1.62
6386407--6386682	60	4.7	59	81	8	255	48	7	10	34	1.65
6396994--6397131	68	2.0	68	83	5	172	31	11	5	50	1.62
6397064--6397228	58	2.8	58	83	8	210	35	8	4	52	1.52
6399067--6399891	86	9.7	85	75	7	514	45	13	18	22	1.85
6398930--6399517	252	2.3	252	81	3	718	44	13	18	22	1.85
6399052--6399891	338	2.5	339	81	2	990	45	14	18	22	1.85
6400074--6400115	8	5.1	8	97	2	75	50	11	11	26	1.74
6400104--6400217	17	6.7	17	76	4	95	41	11	17	29	1.85
6400104--6400211	34	3.2	34	81	2	128	40	12	16	30	1.85
6400129--6400246	34	3.5	34	79	4	105	40	11	17	29	1.86
6400231--6400297	34	2.0	34	81	0	80	37	10	22	29	1.88
6401485--6401539	16	3.3	16	83	14	67	9	9	0	81	0.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6401485--6401545	32	1.9	32	86	6	88	8	11	0	80	0.91
6401490--6401558	24	3.0	24	72	23	67	10	14	0	75	1.05
6401491--6401548	12	5.3	11	76	15	57	6	12	0	81	0.88
6401507--6401556	19	2.7	19	82	17	70	6	18	0	76	0.99
6401486--6401549	16	4.0	17	82	9	64	7	12	0	79	0.92
6401494--6401557	12	6.0	11	79	15	55	7	15	0	76	1.00
6405477--6405720	60	3.9	61	81	10	235	32	10	5	50	1.60
6405477--6405720	67	3.9	60	81	10	240	32	10	5	50	1.60
6406075--6406144	28	2.5	28	92	0	122	10	32	5	51	1.59
6406922--6406970	24	2.0	25	84	4	64	28	2	34	34	1.69
6407536--6407616	15	4.9	15	73	19	63	77	0	20	1	0.83
6407535--6407616	16	4.8	18	76	18	70	78	0	20	1	0.83
6407543--6407645	17	6.1	16	73	15	75	78	0	18	2	0.87
6407538--6407639	24	4.1	24	75	15	91	78	0	18	2	0.88
6407530--6407632	41	2.5	41	84	6	118	74	0	21	3	0.97
6407538--6407623	10	10.0	9	71	24	53	76	0	20	2	0.89
6408801--6408869	21	3.2	22	77	6	61	37	10	14	37	1.80
6408843--6408885	22	2.0	21	81	4	50	44	11	16	27	1.82
6409205--6409816	42	14.6	42	82	3	651	22	12	20	43	1.86
6409205--6409816	85	7.3	84	81	4	651	22	12	20	43	1.86
6409242--6409843	252	2.4	249	84	4	744	22	12	20	44	1.85
6409852--6409886	9	4.0	9	85	7	54	88	2	0	8	0.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6409853--6409885	17	1.9	17	100	0	66	90	3	0	6	0.52
6411665--6411877	59	3.6	59	81	8	229	46	6	8	38	1.61
6411877--6412003	56	2.2	60	85	5	172	49	5	10	34	1.60
6412644--6412691	15	3.3	14	82	8	51	62	2	0	35	1.07
6415753--6415811	3	20.0	3	96	3	111	67	0	0	32	0.91
6416067--6416308	14	17.2	14	66	16	72	48	28	2	20	1.62
6416067--6416379	28	11.0	27	75	10	166	47	29	2	21	1.62
6416178--6416434	30	8.9	29	78	8	220	48	28	1	21	1.57
6416178--6416439	58	4.5	58	78	7	237	48	29	1	21	1.58
6416179--6416310	14	9.3	14	73	9	106	50	30	0	18	1.52

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121