genome.fa.s79.2.7.7.80.10.50.1000.16.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167904.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_17, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  21107920

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   

This is table  16  of  121  ( 14423 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2813353--2813392	20	2.0	20	95	0	71	25	0	12	62	1.30
2821609--2821899	145	2.0	144	89	4	451	38	12	20	27	1.89
2833328--2833392	19	3.3	19	71	26	55	60	3	1	35	1.22
2834051--2834130	42	1.9	42	86	0	115	18	12	17	51	1.76
2840429--2840460	16	2.0	16	93	0	55	46	0	0	53	1.00
2841686--2841924	122	2.0	123	83	4	304	43	10	5	40	1.62
2844834--2844869	2	18.5	2	88	5	56	52	0	0	47	1.00
2845102--2845141	19	2.0	20	90	4	64	67	5	0	27	1.11
2851893--2851939	22	2.1	22	84	0	58	51	10	17	21	1.75
2853610--2853723	24	4.4	25	73	17	79	48	2	0	49	1.15
2855070--2855142	36	2.0	36	87	10	105	38	21	10	28	1.88
2858934--2858997	17	3.8	17	68	16	53	43	3	0	53	1.16
2864226--2864260	18	1.9	18	100	0	70	34	5	11	48	1.63
2867430--2867469	20	2.0	20	85	9	55	60	0	0	40	0.97
2867839--2867901	29	2.2	28	83	5	74	53	1	0	44	1.10
2868359--2868665	63	4.9	62	74	14	234	44	5	5	44	1.48
2868506--2868539	16	2.2	16	89	5	52	50	0	5	44	1.26
2877647--2877685	18	2.1	19	86	13	55	46	0	10	43	1.37
2879490--2879526	19	1.9	19	89	10	58	10	35	24	29	1.89
2879767--2879892	55	2.3	55	78	10	123	54	2	2	40	1.26
2880004--2880074	29	2.4	29	80	13	83	73	0	1	25	0.92
2880022--2880074	17	2.9	18	76	18	56	75	0	1	22	0.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2881020--2881073	24	2.3	24	90	3	83	40	5	0	53	1.24
2890778--2890843	31	2.1	31	97	0	123	19	22	19	37	1.94
2898330--2898359	10	3.1	10	95	4	53	36	0	0	63	0.95
2898332--2898361	9	3.2	9	95	4	51	36	0	0	63	0.95
2901548--2901593	19	2.4	19	85	7	58	54	0	2	43	1.12
2901622--2901842	15	14.6	15	71	18	138	41	1	2	54	1.21
2901622--2901759	8	16.9	8	68	17	70	42	0	0	56	1.09
2901622--2901848	99	2.3	97	78	13	252	41	1	2	55	1.20
2901670--2901845	50	3.7	45	70	26	105	42	1	2	54	1.20
2905973--2905998	10	2.6	10	100	0	52	46	23	0	30	1.53
2909137--2909164	3	9.3	3	100	0	56	0	35	0	64	0.94
2914953--2915275	146	2.2	148	82	6	404	32	12	20	34	1.89
2919960--2919989	6	5.0	6	95	0	51	33	30	16	20	1.94
2924190--2924334	72	2.0	72	97	0	272	34	8	17	40	1.79
2926576--2926604	11	2.5	12	94	5	51	75	0	0	24	0.80
2927232--2927341	55	2.0	56	90	1	177	19	20	17	42	1.89
2934588--2934815	72	3.2	71	81	2	276	24	24	9	42	1.83
2935833--2935864	5	6.8	5	86	13	50	18	0	0	81	0.70
2935828--2935857	13	2.3	13	94	0	51	13	3	0	83	0.77
2936831--2936901	22	3.4	21	88	11	103	49	0	0	50	1.00
2936840--2936901	21	3.2	19	84	13	81	46	0	0	53	1.00
2938499--2938529	13	2.4	13	94	0	53	67	3	6	22	1.28
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2941504--2941555	26	2.0	26	100	0	104	34	15	11	38	1.83
2943810--2943838	12	2.3	13	94	5	51	44	0	31	24	1.54
2944388--2944429	21	2.0	22	86	13	61	33	0	2	64	1.07
2945998--2946049	17	3.0	18	86	13	74	50	1	0	48	1.12
2946169--2946199	16	2.0	15	93	6	53	54	0	0	45	0.99
2946725--2946774	24	2.3	23	86	13	70	48	0	0	52	1.00
2948649--2948706	24	2.5	23	83	10	66	37	3	0	58	1.15
2949025--2949081	30	1.9	30	85	0	78	45	0	1	52	1.11
2949054--2949127	22	3.5	22	96	3	134	50	0	0	50	1.00
2960220--2960275	27	2.1	27	82	0	67	25	25	12	37	1.91
2960898--2960935	20	1.9	20	94	0	67	44	21	5	28	1.73
2960965--2960994	2	15.0	2	100	0	60	50	50	0	0	1.00
2970866--2970951	28	3.0	28	74	15	84	37	8	6	47	1.60
2972161--2972209	22	2.2	22	81	0	53	32	4	2	61	1.26
2977469--2977525	29	2.0	29	96	0	105	42	14	14	29	1.84
2988177--2988220	22	2.0	22	95	0	79	31	11	13	43	1.80
2988483--2988542	25	2.4	25	77	0	66	26	31	11	30	1.92
2992249--2992292	22	2.0	22	95	0	79	31	11	13	43	1.80
2996576--2996656	42	1.9	42	94	0	144	20	33	11	34	1.88
3004684--3004932	89	2.9	89	87	4	330	21	14	13	51	1.76
3006731--3006911	67	2.7	65	84	5	245	28	7	5	58	1.49
3007480--3007511	16	1.9	17	93	6	57	12	6	3	78	1.06
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3009003--3009033	2	16.0	2	93	6	55	51	0	0	48	1.00
3009052--3009081	15	2.0	15	93	0	51	43	0	0	56	0.99
3011850--3011887	16	2.3	17	86	4	51	60	5	0	34	1.19
3012685--3012719	17	2.1	17	94	0	61	62	11	0	25	1.28
3017156--3017196	18	2.2	19	91	4	66	48	0	0	51	1.00
3018422--3018457	18	2.0	18	89	10	56	30	0	2	66	1.06
3022064--3022119	28	2.0	27	93	3	94	42	12	21	23	1.86
3025618--3026366	390	1.9	382	91	4	1209	44	3	2	49	1.33
3027686--3027871	63	3.0	62	87	1	246	30	13	22	33	1.93
3028345--3028546	104	2.0	102	90	2	314	30	17	14	36	1.91
3028528--3028574	19	2.4	20	82	3	51	14	10	23	51	1.74
3037257--3037311	24	2.2	25	80	3	67	61	25	1	10	1.39
3037368--3037408	11	3.7	11	83	0	55	63	14	9	12	1.52
3046634--3046747	53	2.2	53	82	6	133	33	15	17	33	1.92
3048461--3048497	2	18.5	2	100	0	74	48	0	0	51	1.00
3052244--3052270	14	1.9	14	100	0	54	44	3	14	37	1.63
3056640--3056694	25	2.2	25	93	0	92	38	14	9	38	1.78
3064590--3064703	53	2.2	53	82	6	133	33	15	17	33	1.92
3066412--3066444	2	16.5	2	100	0	66	48	0	0	51	1.00
3070098--3070135	20	2.0	20	84	5	51	42	5	7	44	1.56
3072209--3072256	7	6.4	7	88	11	69	16	0	2	81	0.79
3074883--3075931	439	2.4	438	96	0	1900	43	9	8	37	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3078764--3078971	104	2.0	104	89	0	317	29	18	12	39	1.88
3079688--3079719	16	2.0	16	100	0	64	37	6	12	43	1.68
3082906--3083145	84	2.8	83	85	6	277	26	20	15	37	1.92
3095464--3095498	18	1.9	18	88	0	52	20	0	22	57	1.41
3098634--3098702	29	2.4	28	83	11	77	53	0	0	46	1.00
3100971--3101009	19	2.0	20	85	5	53	69	2	5	23	1.21
3101071--3101136	19	3.3	19	80	6	69	80	4	10	4	1.00
3101731--3101755	12	2.1	12	100	0	50	92	0	8	0	0.40
3101995--3102041	18	2.5	19	83	10	53	80	6	6	6	1.01
3102007--3102031	11	2.3	11	100	0	50	84	8	8	0	0.79
3103954--3104029	24	3.3	23	72	20	61	57	0	1	40	1.07
3103965--3104015	18	3.1	17	86	10	70	56	0	0	43	0.99
3103928--3104027	47	2.1	48	81	17	122	53	0	2	45	1.12
3104218--3104254	19	2.0	18	89	5	56	45	2	2	48	1.30
3104707--3104741	15	2.4	15	90	4	54	74	0	20	5	1.02
3105620--3105675	7	7.9	7	80	9	60	80	3	1	14	0.93
3105620--3105675	15	3.9	14	80	11	60	80	3	1	14	0.93
3107132--3107192	32	1.9	31	83	12	79	77	3	4	14	1.07
3107185--3107222	20	1.9	20	94	0	67	50	13	18	18	1.78
3111825--3111870	23	2.0	23	91	0	74	41	10	10	36	1.75
3113718--3113813	50	1.9	51	89	4	151	29	9	6	55	1.56
3113763--3113897	56	2.4	57	81	13	154	34	7	5	52	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3114239--3114381	56	2.5	56	80	16	163	35	11	2	50	1.53
3113519--3114588	472	2.3	466	82	5	1212	33	13	9	44	1.75
3115013--3115051	13	3.0	13	82	10	53	30	2	2	64	1.21
3115040--3115204	51	3.1	50	69	22	113	32	8	7	52	1.59
3115476--3115687	112	1.9	112	80	8	250	32	8	5	53	1.54
3116041--3116176	57	2.4	54	81	9	139	31	8	8	50	1.64
3116428--3116626	57	3.6	55	73	13	176	32	9	6	51	1.59
3116529--3116637	57	1.9	55	83	7	130	33	9	5	51	1.57
3114683--3117087	470	5.1	468	83	5	2885	32	11	9	46	1.72
3122685--3122730	23	2.0	23	91	0	74	41	10	10	36	1.75

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121