genome.fa.s79.2.7.7.80.10.50.1000.88.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167904.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_17, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  21107920

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   

This is table  88  of  121  ( 14423 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14913332--14913380	8	5.9	8	82	17	64	34	0	0	65	0.93
14913327--14913381	18	3.1	18	80	15	69	34	0	0	65	0.93
14913366--14913416	23	2.3	22	87	12	70	47	0	0	52	1.00
14913351--14913419	18	3.8	18	79	11	70	46	0	0	53	1.00
14914088--14914139	22	2.3	22	86	3	68	61	0	0	38	0.96
14927364--14927576	73	2.9	73	79	10	206	35	8	6	48	1.60
14927351--14927575	72	3.1	71	78	14	228	36	8	6	48	1.59
14929624--14929671	8	5.9	8	78	4	51	81	4	0	14	0.84
14929626--14929682	25	2.3	25	87	6	80	80	3	3	12	0.96
14929616--14929672	25	2.2	26	81	12	73	77	5	5	12	1.11
14930481--14930516	15	2.2	17	90	9	58	80	2	2	13	0.93
14930982--14931023	16	2.6	17	81	7	52	59	0	0	40	0.97
14931351--14931385	18	1.9	19	88	11	56	80	2	8	8	1.01
14932273--14932320	19	2.4	20	93	6	80	52	0	0	47	1.00
14932312--14932341	3	10.0	3	100	0	60	66	0	0	33	0.92
14937595--14937653	27	2.2	27	100	0	118	18	13	40	27	1.88
14939477--14939519	2	21.5	2	95	0	77	0	46	0	53	1.00
14952695--14952761	28	2.4	29	80	11	79	49	1	0	49	1.10
14953864--14953924	5	12.8	5	71	22	51	21	0	1	77	0.86
14953868--14954101	4	55.8	4	69	19	81	24	4	2	68	1.20
14953864--14953931	13	5.1	14	79	13	74	20	0	1	77	0.84
14953864--14954023	25	6.4	25	71	16	75	21	3	2	72	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14953956--14954100	51	3.0	50	80	14	132	28	3	2	65	1.20
14954016--14954124	21	5.3	21	75	11	84	28	6	3	61	1.38
14954069--14954095	14	1.9	14	100	0	54	33	7	0	59	1.25
14954014--14954116	39	2.8	37	81	12	113	28	5	2	63	1.32
14953957--14954100	47	3.3	46	77	13	126	29	3	2	65	1.20
14955009--14955039	3	10.3	3	100	0	62	32	0	0	67	0.91
14955063--14955151	6	14.5	6	75	19	69	16	5	1	76	1.04
14955053--14955155	23	4.6	22	75	13	86	17	6	0	74	1.08
14955063--14955151	17	5.2	17	73	16	78	16	5	1	76	1.04
14955063--14955151	5	16.8	5	75	20	67	16	5	1	76	1.04
14955076--14955152	27	2.7	28	80	11	77	16	6	1	75	1.08
14955127--14955151	13	1.9	13	100	0	50	20	0	0	80	0.72
14955168--14955787	59	10.7	57	83	6	699	44	6	12	36	1.69
14955464--14955555	29	3.1	29	63	25	75	39	4	14	42	1.65
14955169--14955787	57	10.7	57	82	8	660	43	6	12	36	1.69
14973859--14973909	13	4.0	13	80	14	54	76	0	11	11	1.02
14974903--14975281	85	4.5	85	77	11	332	23	16	19	40	1.91
14974903--14975276	44	8.8	43	79	8	365	23	16	19	40	1.91
14975104--14975263	78	2.0	80	82	3	198	24	13	20	42	1.87
14975457--14975518	12	4.8	13	75	20	67	19	1	0	79	0.82
14975457--14975518	7	9.3	7	74	10	58	19	1	0	79	0.82
14975461--14975517	19	2.9	19	80	10	71	19	1	0	78	0.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14975549--14975689	4	34.5	4	68	18	53	31	3	1	63	1.20
14975742--14975771	16	1.9	15	93	6	51	13	0	0	86	0.57
14976269--14976320	19	2.6	21	73	14	56	59	0	40	0	0.97
14976594--14976677	17	4.9	16	80	15	89	15	5	0	78	0.93
14976594--14976677	5	15.8	5	77	17	73	15	5	0	78	0.93
14976594--14976681	23	3.9	22	80	14	99	14	6	0	78	0.95
14976594--14976681	11	7.8	12	71	25	59	14	6	0	78	0.95
14976593--14976681	28	3.1	27	80	13	83	14	7	0	77	0.98
14976724--14976905	62	3.0	60	76	13	183	43	8	10	36	1.70
14976694--14976912	59	3.7	59	80	10	232	44	7	11	36	1.69
14979399--14979439	21	2.0	21	85	9	57	65	2	2	29	1.18
14980290--14980337	1	48.0	1	85	0	60	91	2	2	4	0.54
14986096--14986144	25	1.9	26	84	12	66	32	6	4	57	1.42
14986443--14986475	17	1.9	17	88	11	50	57	0	0	42	0.98
14989677--14989760	19	4.5	18	72	11	62	20	3	26	50	1.64
14989744--14989786	9	4.6	9	80	11	50	25	0	16	58	1.38
14990284--14990362	4	20.2	4	70	14	58	25	0	5	69	1.08
14990284--14990362	26	3.0	26	76	7	79	25	0	5	69	1.08
14990652--14990723	38	1.9	38	82	2	92	47	11	11	30	1.74
14992542--14992620	22	3.6	22	86	3	97	16	2	31	49	1.59
14992568--14992638	7	9.7	7	76	14	72	19	1	28	50	1.56
14992590--14992638	15	3.3	15	88	11	75	20	0	26	53	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14992569--14992638	22	3.2	22	87	4	88	20	1	27	51	1.56
14992597--14992654	22	2.7	22	81	5	66	22	0	25	51	1.48
14992680--14992780	13	7.2	14	64	18	50	15	1	28	53	1.53
14992606--14992800	14	13.8	14	69	12	78	18	2	29	49	1.61
14992646--14992810	85	1.9	85	83	2	215	18	3	29	49	1.62
14992828--14992951	30	4.2	29	78	5	122	18	1	32	47	1.58
14992828--14992951	60	2.1	59	84	1	158	18	1	32	47	1.58
14992897--14992987	42	2.2	42	84	6	121	16	1	30	51	1.52
14992896--14992962	13	4.9	13	71	16	55	14	0	31	53	1.42
14993426--14993450	10	2.5	10	100	0	50	92	0	0	8	0.40
14993547--14993968	109	3.8	110	79	8	417	38	19	20	21	1.93
14993720--14993763	22	2.0	22	86	0	61	31	20	22	25	1.98
14994669--14994783	33	3.5	33	85	7	171	35	13	20	29	1.92
15009286--15009850	48	11.7	48	81	7	592	27	11	21	39	1.88
15009286--15009806	98	5.3	99	84	5	591	28	11	21	39	1.88
15009778--15009882	44	2.4	44	90	0	165	24	19	20	36	1.95
15013245--15013321	23	3.5	22	77	16	79	62	1	2	33	1.17
15015833--15015989	52	3.0	51	80	5	172	26	19	8	45	1.80
15016006--15016052	22	2.1	22	92	0	76	53	19	2	25	1.56
15016292--15016357	25	2.6	25	78	4	71	19	37	7	34	1.80
15016955--15017084	52	2.5	52	89	0	197	26	16	7	49	1.73
15017109--15017150	22	1.9	22	95	0	75	47	26	0	26	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15018064--15018175	52	2.2	52	88	6	165	30	17	7	44	1.76
15018199--15018240	11	3.8	11	83	0	57	52	23	0	23	1.47
15018198--15018240	22	2.0	22	90	0	68	51	23	0	25	1.49
15018478--15018546	25	2.7	25	78	14	79	23	30	8	37	1.85
15019124--15019269	52	2.8	52	84	2	177	28	20	6	44	1.77
15019294--15019335	11	3.8	11	83	0	57	47	28	0	23	1.52
15019294--15019336	22	2.0	22	95	0	77	46	27	0	25	1.53
15020206--15020362	52	3.0	52	84	0	197	28	22	7	42	1.79
15020379--15020425	22	2.1	22	88	0	67	53	23	2	21	1.57
15020387--15020428	11	3.8	11	87	0	66	52	28	0	19	1.46
15020387--15020429	22	2.0	22	95	0	77	51	27	0	20	1.48
15021299--15021443	52	2.8	52	80	6	159	27	19	8	44	1.79
15021725--15021817	25	3.8	24	72	12	73	24	31	8	35	1.86
15022381--15022531	52	2.9	52	80	7	164	27	21	7	43	1.79
15022563--15022602	11	3.6	11	82	0	53	50	20	0	30	1.49
15024063--15024112	21	2.4	21	93	0	82	40	26	10	24	1.86
15028097--15028145	25	1.9	26	87	4	73	32	6	2	59	1.34
15028234--15028270	19	1.9	19	88	0	56	51	2	2	43	1.30
15028473--15028505	17	1.9	17	88	11	50	57	0	0	42	0.98
15029071--15029142	26	3.1	25	75	16	66	48	1	2	47	1.25
15032303--15032361	30	2.0	30	93	0	100	22	0	5	72	1.03
15032656--15032727	38	1.9	38	82	2	92	47	11	11	30	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15034568--15034622	22	2.5	22	96	0	101	16	3	30	49	1.63
15034612--15034664	7	7.1	7	83	10	61	22	0	22	54	1.45
15034590--15034664	15	5.1	14	82	9	87	21	1	25	52	1.55
15034612--15034664	22	2.4	22	90	3	79	22	0	22	54	1.45
15034624--15034680	22	2.7	22	81	5	64	22	0	24	52	1.47
15034672--15034837	85	2.0	85	83	4	210	19	3	28	49	1.63
15034802--15034957	59	2.6	58	80	7	145	17	3	34	43	1.68
15034888--15034976	29	3.0	29	80	3	106	17	2	35	43	1.62
15034854--15034976	59	2.1	59	84	0	156	17	2	34	45	1.61
15034922--15035012	42	2.2	42	84	9	123	17	1	30	50	1.53

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121