genome.fa.s79.2.7.7.80.10.50.1000.113.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167904.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_17, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  21107920

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   

This is table  113  of  121  ( 14423 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19370939--19370977	20	2.0	20	84	0	51	43	17	0	38	1.50
19380928--19380995	20	3.4	20	73	18	61	57	1	0	41	1.08
19383942--19383982	21	2.0	21	100	0	82	29	9	29	31	1.89
19389684--19389731	25	1.9	25	83	8	62	31	6	4	58	1.42
19397149--19397437	142	2.0	142	99	0	569	38	12	22	26	1.90
19402098--19402127	3	10.0	3	100	0	60	33	0	0	66	0.92
19406991--19407054	16	3.9	16	71	21	53	34	4	0	60	1.17
19407022--19407054	15	2.3	15	89	5	50	30	0	0	69	0.88
19406997--19407054	30	1.9	30	83	13	75	31	5	0	63	1.16
19410107--19410160	28	1.9	28	85	7	74	37	0	1	61	1.07
19415578--19415616	17	2.4	17	84	16	55	51	0	0	48	1.00
19415585--19415645	30	2.1	31	87	9	92	45	0	1	52	1.10
19415613--19415652	20	2.0	20	90	0	62	50	0	2	47	1.14
19415643--19415700	24	2.5	23	86	8	73	65	0	0	34	0.93
19416565--19416598	18	1.9	17	94	5	59	55	5	2	35	1.39
19417759--19417902	52	2.8	51	78	11	134	29	18	6	46	1.73
19417793--19417904	52	2.2	50	81	7	136	28	16	6	49	1.69
19420117--19420149	16	2.1	16	88	5	50	51	3	0	45	1.16
19423514--19423545	16	2.1	16	94	5	57	59	0	12	28	1.34
19423522--19423585	23	2.7	23	83	7	67	65	1	3	29	1.17
19423566--19423611	20	2.3	21	77	7	51	67	2	0	30	1.03
19430212--19430339	66	1.9	66	82	3	159	39	7	10	42	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19432570--19432629	24	2.3	26	80	16	79	40	18	13	28	1.88
19434735--19434777	16	2.6	16	85	3	50	37	0	16	46	1.47
19434990--19435038	7	7.0	7	85	0	62	44	0	12	42	1.41
19440279--19440437	22	7.0	22	66	12	72	36	11	10	41	1.76
19440611--19440738	22	5.8	22	81	0	103	35	6	8	49	1.59
19440605--19440724	44	2.7	44	83	2	134	35	5	10	49	1.58
19440605--19440777	66	2.6	66	79	8	158	36	6	9	46	1.64
19440899--19440961	22	2.9	21	72	6	63	38	9	4	47	1.57
19441220--19441455	22	10.8	21	78	11	77	37	6	6	50	1.54
19441283--19441466	44	4.2	44	88	1	235	39	4	5	50	1.47
19441307--19441432	11	11.5	11	69	9	78	37	3	4	53	1.40
19441231--19441461	66	3.5	65	78	10	204	38	5	6	49	1.52
19441283--19441466	22	8.4	22	80	2	190	39	4	5	50	1.47
19441465--19441507	22	2.0	22	95	0	77	48	6	0	44	1.29
19441502--19441583	22	3.7	22	75	0	74	34	10	8	46	1.70
19442440--19442786	22	16.2	22	70	11	150	32	8	6	51	1.58
19442447--19442554	11	9.8	11	67	11	51	35	9	5	50	1.58
19442675--19442716	11	3.8	11	87	0	57	35	0	2	61	1.09
19442664--19442808	22	6.6	22	77	7	82	34	6	5	53	1.51
19442861--19442925	26	2.5	26	97	0	121	36	12	3	47	1.57
19444167--19444244	36	2.2	36	90	2	122	51	3	17	26	1.63
19445182--19445472	152	1.9	151	86	4	408	44	5	8	40	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19448621--19448671	26	1.9	27	96	4	95	29	23	13	33	1.93
19451327--19451366	3	13.0	3	87	10	55	30	0	2	67	1.04
19452491--19452534	21	2.0	22	86	4	63	47	0	2	50	1.13
19452917--19452950	16	2.2	16	89	5	52	73	2	2	20	1.09
19454413--19454438	13	2.0	13	100	0	52	15	0	30	53	1.42
19454405--19454463	30	1.9	31	86	3	84	18	3	32	45	1.66
19454552--19454610	30	2.0	30	83	6	75	15	0	37	47	1.45
19454547--19454617	30	2.3	30	76	7	72	18	0	33	47	1.49
19459547--19459572	2	13.0	2	100	0	52	50	0	0	50	1.00
19460991--19461093	45	2.3	44	91	1	161	32	6	13	47	1.69
19467875--19467904	13	2.3	13	94	0	51	40	0	0	60	0.97
19470762--19470944	96	1.9	93	82	11	230	39	10	9	40	1.71
19471863--19471898	18	2.0	18	88	0	54	66	0	27	5	1.13
19471883--19471925	13	3.3	13	76	0	50	72	0	23	4	1.04
19473609--19473667	29	2.0	29	96	0	109	44	6	15	33	1.73
19473922--19473984	3	19.3	3	79	12	63	28	4	1	65	1.22
19473980--19474043	20	3.1	20	76	8	74	28	9	0	62	1.26
19473984--19474046	22	3.0	22	72	21	62	28	9	0	61	1.27
19474888--19474922	16	2.2	16	94	0	61	14	0	8	77	0.99
19474866--19474956	6	12.6	7	75	23	59	14	2	3	80	0.94
19474866--19474956	14	6.8	13	74	19	73	14	2	3	80	0.94
19474866--19474960	16	5.9	16	75	22	60	14	2	3	80	0.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19474977--19475193	58	3.8	57	87	5	285	42	7	12	37	1.71
19474977--19475193	116	1.9	115	87	4	321	42	7	12	37	1.71
19480002--19480057	16	3.4	16	74	11	51	28	0	3	67	1.07
19481153--19481204	12	4.5	11	79	13	59	11	1	3	82	0.88
19481169--19481211	22	2.0	22	85	0	59	18	0	2	79	0.85
19481437--19481952	49	11.0	48	79	11	536	35	23	14	26	1.93
19481425--19481952	193	2.8	184	81	11	619	35	22	14	27	1.93
19481425--19481952	92	5.6	91	79	11	545	35	22	14	27	1.93
19495002--19495053	20	2.5	20	84	9	61	15	11	9	63	1.52
19495388--19495428	20	2.0	20	85	0	55	19	4	4	70	1.24
19495341--19495429	27	3.3	25	72	20	65	17	5	4	71	1.22
19497515--19497561	14	3.2	14	79	8	58	76	0	10	12	1.02
19497500--19497577	30	2.7	29	80	11	88	76	0	15	7	0.99
19497523--19497555	8	4.1	8	88	11	50	78	0	9	12	0.95
19498581--19498660	42	1.9	42	84	0	106	26	13	18	41	1.88
19498582--19498672	42	2.2	42	82	2	103	27	14	17	40	1.88
19498665--19498781	41	2.9	41	92	0	189	27	16	19	36	1.93
19499118--19499174	7	8.0	7	78	3	51	17	1	5	75	1.07
19499203--19499269	3	20.7	3	75	17	55	28	5	1	64	1.26
19499259--19499319	20	3.0	20	74	9	68	27	9	0	62	1.27
19499260--19499322	22	3.0	22	72	21	62	28	9	0	61	1.27
19500139--19500191	4	13.5	4	90	9	51	26	0	0	73	0.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19500222--19500265	12	3.6	12	84	6	52	6	9	4	79	1.04
19500236--19500292	16	3.7	15	77	17	55	10	7	1	80	0.96
19500236--19500301	14	4.6	14	77	11	53	12	7	1	78	1.01
19500313--19500584	58	4.7	58	83	6	322	43	5	13	38	1.67
19500314--19500584	115	2.3	116	84	5	352	42	5	13	38	1.67
19504747--19504800	27	2.0	27	96	0	99	29	20	7	42	1.79
19504820--19504878	31	1.9	31	92	0	100	28	25	22	23	1.99
19507406--19507442	3	12.3	3	100	0	74	32	0	0	67	0.91
19514018--19514103	43	2.0	43	82	10	106	31	11	15	41	1.82
19514261--19514286	3	8.7	3	100	0	52	34	0	0	65	0.93
19514364--19514414	23	2.2	23	89	0	75	45	17	11	25	1.83
19515425--19515474	19	2.9	17	75	21	50	72	4	4	20	1.18
19515711--19515744	7	4.7	7	88	3	50	82	2	0	14	0.79
19519134--19519313	41	4.4	40	87	4	245	48	13	6	31	1.68
19519159--19519307	21	7.3	21	75	13	150	48	14	7	30	1.70
19519327--19519381	28	2.0	28	82	7	67	58	9	5	27	1.51
19519427--19519487	17	3.6	17	82	10	81	70	11	4	13	1.31
19519458--19519550	22	4.2	22	91	5	143	68	16	5	9	1.35
19522121--19522163	19	2.3	18	88	4	59	2	13	0	83	0.74
19523576--19523808	57	4.0	57	78	13	260	46	5	12	36	1.63
19523747--19523885	72	1.9	71	88	4	208	51	5	9	33	1.58
19523806--19523982	60	3.0	59	80	10	218	49	6	10	32	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19523804--19523977	59	2.9	58	80	11	219	51	6	10	32	1.61
19535476--19535767	44	6.6	44	80	4	250	24	11	17	45	1.82
19535473--19535778	88	3.5	88	83	5	318	24	11	18	45	1.83
19535466--19535819	132	2.7	131	82	3	385	25	11	19	43	1.84
19535476--19535821	44	8.0	41	78	6	201	25	10	18	44	1.82
19536933--19536965	14	2.3	15	89	5	50	63	9	0	27	1.24
19536871--19537027	72	2.2	73	85	6	203	50	8	8	31	1.63
19536947--19537134	60	3.2	59	82	6	245	48	6	11	33	1.64
19537120--19537158	15	2.6	15	84	8	53	53	5	2	38	1.37
19546492--19546532	21	2.0	21	85	0	55	56	9	9	24	1.62

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121