genome.fa.s79.2.7.7.80.10.50.1000.38.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167904.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_17, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  21107920

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   

This is table  38  of  121  ( 14423 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6759362--6759580	99	2.2	95	82	8	244	45	13	12	28	1.80
6760079--6760123	20	2.3	19	81	11	54	15	22	0	62	1.33
6760431--6760507	31	2.5	30	79	4	91	25	12	20	40	1.89
6763277--6763305	15	1.9	15	100	0	58	31	6	6	55	1.53
6763447--6763476	15	1.9	16	93	6	53	30	0	23	46	1.52
6763467--6763508	19	2.2	19	83	8	50	16	0	23	59	1.37
6766519--6766577	30	2.0	30	83	6	75	44	5	8	42	1.57
6767590--6767626	20	1.9	20	94	5	67	0	16	0	83	0.64
6768085--6769223	566	2.0	566	97	0	2161	27	15	21	35	1.94
6769969--6770186	76	3.0	76	87	6	292	41	13	9	35	1.77
6776747--6776834	40	2.2	40	93	2	151	35	12	14	37	1.84
6777515--6777614	49	2.1	48	96	1	182	20	19	10	51	1.75
6781573--6781798	95	2.4	93	81	7	249	35	17	11	35	1.86
6781573--6781850	47	5.9	46	74	6	207	34	17	11	37	1.85
6782190--6782239	21	2.5	20	83	6	64	54	14	8	24	1.66
6784242--6784341	21	4.8	20	77	9	103	45	38	2	15	1.57
6784281--6784333	26	2.0	26	88	0	79	45	35	1	16	1.59
6784261--6784366	47	2.3	47	86	0	140	43	37	1	16	1.60
6784248--6784366	7	17.6	7	73	8	86	43	38	1	15	1.57
6784281--6784366	40	2.2	40	85	4	111	43	39	1	16	1.55
6786169--6786450	93	3.0	93	77	4	284	40	10	11	37	1.75
6787440--6787512	37	1.9	39	83	10	98	71	1	21	5	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6789747--6789813	23	3.0	23	78	10	75	74	0	13	11	1.07
6789751--6789813	22	2.8	22	76	9	65	74	0	12	12	1.07
6789989--6790082	28	3.2	28	68	11	80	27	15	23	32	1.95
6790000--6790099	32	3.3	31	70	11	98	28	17	21	34	1.95
6789972--6790099	60	2.1	60	88	2	186	28	17	20	34	1.95
6789991--6790241	138	1.8	139	89	0	396	27	14	23	35	1.93
6790138--6790313	60	3.0	60	82	4	212	30	15	22	31	1.95
6790500--6790692	35	5.5	35	74	8	124	21	11	11	54	1.69
6790500--6790652	70	2.2	70	78	4	166	22	11	11	54	1.69
6790776--6790901	35	3.6	34	78	4	144	20	17	11	50	1.76
6790914--6791302	35	11.2	35	68	10	147	22	17	9	50	1.75
6791005--6791275	103	2.6	104	79	6	255	21	15	10	52	1.73
6791314--6791673	35	10.4	35	65	15	106	18	15	12	53	1.73
6791477--6791641	68	2.4	68	81	8	183	16	12	12	57	1.65
6791619--6791853	35	6.8	34	70	9	136	18	17	13	50	1.78
6791630--6791818	104	1.8	103	80	7	231	17	17	13	51	1.76
6794278--6794389	7	15.9	7	70	19	56	46	27	1	24	1.63
6794278--6794389	22	5.3	21	74	12	86	46	27	1	24	1.63
6796096--6796149	18	2.9	18	88	2	72	51	31	1	14	1.53
6809004--6809028	13	1.9	13	100	0	50	56	0	36	8	1.29
6814134--6814183	15	3.3	15	80	0	64	78	0	12	10	0.98
6814135--6814191	30	1.9	30	89	7	89	75	0	15	8	1.04
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6814135--6814192	15	3.9	14	78	10	62	75	0	15	8	1.02
6815381--6815454	32	2.3	32	81	4	78	20	16	10	52	1.73
6815418--6815500	33	2.5	33	80	0	94	18	22	9	49	1.76
6815440--6815521	33	2.5	33	84	7	105	18	21	8	51	1.73
6815866--6815938	35	2.1	35	86	0	101	21	13	9	54	1.67
6815878--6815959	33	2.4	35	79	4	96	29	15	12	42	1.83
6816374--6816419	18	2.5	19	85	3	58	30	8	0	60	1.26
6829031--6829055	13	1.9	13	100	0	50	40	0	8	52	1.31
6830943--6830973	12	2.5	13	94	5	55	0	48	0	51	1.00
6831667--6831740	37	2.0	37	100	0	148	21	10	18	48	1.78
6832812--6832841	12	2.5	12	94	0	51	16	6	10	66	1.41
6833758--6833826	3	24.3	3	79	16	76	63	0	1	34	1.03
6834554--6834617	32	2.0	32	84	6	85	42	1	7	48	1.41
6834788--6835035	72	3.5	70	79	4	255	42	8	5	42	1.59
6836447--6836473	2	13.5	2	100	0	54	51	0	0	48	1.00
6840646--6840677	12	2.6	12	95	5	55	87	3	9	0	0.64
6844618--6844658	3	13.7	3	100	0	82	31	0	0	68	0.90
6845083--6845124	21	2.0	21	90	0	66	28	9	33	28	1.88
6854059--6854091	17	2.1	17	88	11	52	60	0	0	39	0.97
6855095--6855133	11	3.4	11	80	13	51	74	0	0	25	0.82
6855316--6855356	11	3.5	11	81	12	55	31	0	0	68	0.90
6855306--6855369	23	2.6	24	85	7	76	34	0	0	65	0.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6855545--6855596	27	1.9	27	84	0	68	44	1	1	51	1.23
6861399--6861469	34	2.1	34	89	0	106	36	26	12	23	1.91
6865843--6865886	23	2.0	21	87	12	63	45	25	0	29	1.54
6869782--6869848	23	2.9	24	77	18	70	49	0	2	47	1.16
6869983--6870046	26	2.5	26	87	5	87	50	1	0	48	1.10
6874488--6874528	19	2.2	19	86	0	55	48	2	2	46	1.28
6874574--6874625	24	2.0	24	85	10	68	42	5	3	48	1.45
6875370--6875400	16	1.9	16	93	0	53	29	3	3	64	1.25
6875440--6875468	13	2.1	14	93	6	51	48	13	6	31	1.69
6875449--6875527	18	4.4	18	72	23	76	49	11	6	32	1.64
6875452--6875533	20	4.4	20	72	22	88	47	12	7	32	1.68
6875467--6875525	16	3.6	16	76	10	57	49	11	6	32	1.66
6877223--6877264	18	2.3	18	87	4	57	40	14	14	30	1.85
6877232--6877321	18	4.9	18	77	5	81	38	11	15	34	1.83
6877412--6877449	16	2.3	17	90	4	60	36	10	18	34	1.85
6877398--6877449	17	3.1	16	83	5	59	34	11	17	36	1.86
6877500--6877591	44	2.1	44	85	4	123	45	15	7	31	1.74
6878916--6878958	11	3.9	11	84	9	61	2	9	0	88	0.60
6878916--6878965	8	6.1	8	81	11	57	4	10	0	86	0.71
6878920--6878950	13	2.4	13	100	0	62	0	6	0	93	0.35
6878950--6878985	10	3.8	10	92	7	58	16	16	0	66	1.25
6878937--6878985	18	2.7	18	84	12	57	12	14	0	73	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6880913--6880952	15	2.6	16	92	4	64	22	0	2	75	0.93
6881253--6881293	3	13.7	3	100	0	82	34	0	0	65	0.93
6881479--6881509	16	1.9	16	93	0	53	45	9	12	32	1.75
6881957--6882384	175	2.5	170	84	3	527	46	14	12	26	1.80
6883149--6883471	142	2.3	142	82	5	377	42	13	13	31	1.82
6883149--6883496	144	2.4	141	81	6	400	42	12	13	31	1.82
6883149--6883564	144	2.9	141	76	10	375	41	12	14	31	1.83
6883901--6883954	25	2.2	25	83	9	67	18	11	24	46	1.81
6884386--6884710	70	4.7	70	76	10	220	47	11	18	22	1.80
6884429--6884591	35	4.7	35	74	8	125	46	12	16	23	1.82
6884534--6884720	103	1.8	103	88	0	284	45	9	21	22	1.80
6884567--6884735	68	2.5	68	80	7	180	46	9	21	22	1.79
6884543--6884739	35	5.7	35	74	4	148	47	8	20	22	1.77
6884746--6884946	35	5.7	35	69	8	122	43	10	21	23	1.84
6884637--6884858	119	1.9	119	80	3	268	45	9	21	22	1.81
6884846--6885049	69	2.9	69	83	4	214	47	8	20	23	1.78
6884916--6885039	35	3.6	34	73	8	90	50	6	18	24	1.70
6884939--6885050	35	3.2	34	72	8	109	49	8	19	23	1.75
6889509--6889562	25	2.2	25	83	6	65	48	7	5	38	1.55
6890377--6890443	33	2.0	33	94	0	116	52	7	5	34	1.54
6898698--6898735	16	2.4	16	86	8	51	81	0	13	5	0.85
6899472--6899544	33	2.2	33	82	4	85	32	15	16	35	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6899827--6900325	43	11.5	42	78	6	424	25	15	16	42	1.87
6899827--6900351	86	6.1	86	81	4	520	26	15	17	41	1.88
6899827--6900326	130	3.9	130	81	3	526	25	15	16	42	1.87
6899827--6900360	44	12.3	44	79	6	430	26	14	16	42	1.87
6901294--6901333	21	1.9	21	89	0	62	22	2	7	67	1.28
6901645--6901685	17	2.4	17	95	0	73	41	4	17	36	1.71
6904598--6904758	24	7.0	24	72	13	97	54	8	3	34	1.48
6904633--6904671	18	2.2	18	86	9	53	61	7	0	30	1.24
6904740--6904775	17	2.1	17	94	0	63	44	11	8	36	1.70
6904587--6904982	66	6.0	67	83	10	359	54	10	3	32	1.49

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121