genome.fa.s79.2.7.7.80.10.50.1000.70.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167904.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_17, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  21107920

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   

This is table  70  of  121  ( 14423 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12013062--12013116	25	2.2	25	83	9	67	40	5	5	49	1.49
12012802--12013152	182	1.9	179	81	12	414	36	10	5	47	1.61
12013179--12013228	16	3.1	17	82	8	59	78	8	0	14	0.97
12014051--12014098	16	2.8	18	78	15	57	68	10	4	16	1.33
12014232--12014293	19	3.4	19	70	17	58	24	6	14	54	1.63
12014384--12014577	103	1.9	101	82	8	241	45	11	8	34	1.72
12015196--12015258	21	3.0	21	95	0	108	39	15	14	30	1.87
12017405--12017479	38	2.0	38	81	0	87	32	6	22	38	1.80
12018980--12019033	19	2.8	19	88	2	72	14	0	37	48	1.45
12018985--12019244	7	38.6	7	74	13	161	20	0	33	45	1.52
12019002--12019244	26	8.7	29	70	17	110	21	0	33	45	1.52
12019021--12019110	41	2.1	43	85	4	121	17	0	34	47	1.48
12019004--12019236	127	1.8	126	81	11	289	21	0	32	45	1.52
12027563--12027722	55	2.9	54	81	2	176	24	5	10	60	1.50
12027539--12027769	55	4.2	55	78	5	130	25	4	9	59	1.48
12028844--12028906	32	2.0	32	93	0	108	33	11	12	42	1.78
12031771--12031875	49	2.2	48	92	1	174	48	2	6	41	1.44
12031996--12032061	22	3.2	22	67	20	70	37	12	1	48	1.50
12031983--12032061	39	2.1	39	92	4	135	37	11	2	48	1.53
12033568--12033645	29	2.7	30	76	4	79	23	5	3	67	1.27
12033686--12033714	11	2.7	11	94	5	51	24	0	0	75	0.80
12033655--12033721	34	2.0	34	82	5	82	25	4	0	70	1.06
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12033674--12033726	17	3.1	17	80	0	61	22	3	0	73	0.99
12034729--12034767	19	2.0	21	85	10	55	48	2	2	46	1.29
12034729--12034775	19	2.5	19	80	16	53	51	2	2	44	1.25
12034962--12035064	51	2.0	53	86	7	149	45	7	8	37	1.64
12035059--12035102	17	2.4	18	92	7	72	61	4	11	22	1.48
12035061--12035102	18	2.3	19	91	4	68	64	4	9	21	1.42
12035342--12035399	21	2.8	21	89	0	89	15	15	10	58	1.62
12037454--12037483	2	15.0	2	100	0	60	50	0	0	50	1.00
12040637--12040681	8	5.8	8	86	2	65	40	0	0	60	0.97
12040628--12040677	24	2.1	24	88	0	73	40	0	0	60	0.97
12040640--12040698	16	3.9	15	80	6	57	44	0	0	55	0.99
12040667--12040717	21	2.5	21	93	3	86	49	0	0	50	1.00
12041821--12041996	60	3.0	60	74	10	146	44	11	11	31	1.77
12041897--12042038	60	2.3	60	77	5	144	42	9	12	34	1.76
12041973--12042147	60	2.9	59	76	9	174	41	9	18	30	1.83
12043411--12043440	14	2.1	14	100	0	60	60	0	0	40	0.97
12056541--12056701	73	2.2	76	79	9	181	47	5	6	40	1.54
12056780--12056819	19	2.2	18	91	8	71	52	5	0	42	1.23
12057074--12057116	16	2.7	16	82	17	54	20	9	0	69	1.15
12057541--12057588	18	2.6	19	75	18	55	62	0	2	35	1.07
12057633--12057703	28	2.5	28	84	13	83	47	1	0	50	1.09
12059964--12059998	18	1.9	18	88	0	52	54	5	34	5	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12059951--12059997	12	3.9	12	85	0	58	51	8	36	4	1.52
12059936--12059997	24	2.6	24	76	0	70	50	8	37	4	1.54
12060215--12060255	15	2.7	15	80	0	55	41	34	12	12	1.80
12067830--12067874	19	2.3	20	75	24	51	66	4	4	24	1.29
12068522--12068587	36	1.9	34	82	11	82	46	1	0	51	1.10
12070101--12070140	21	1.9	21	84	0	53	35	0	0	65	0.93
12078436--12078463	11	2.5	11	100	0	56	7	7	0	85	0.73
12078721--12078767	22	2.1	22	96	0	85	23	14	25	36	1.93
12080888--12080943	19	2.8	19	75	5	58	5	14	1	78	1.00
12080897--12080969	24	2.9	25	80	15	64	4	17	0	78	0.91
12080896--12080981	29	2.9	29	84	11	95	5	16	0	77	0.95
12080889--12080953	23	2.9	22	76	15	69	4	15	1	78	0.99
12080929--12081001	38	1.9	38	83	10	96	6	16	1	75	1.09
12085262--12085291	11	2.7	11	89	0	51	13	0	16	70	1.18
12091100--12091152	16	3.4	15	75	17	54	43	5	0	50	1.25
12091346--12091421	11	6.7	11	70	26	52	34	0	1	64	1.02
12091363--12091417	26	2.2	25	90	3	83	38	0	0	61	0.96
12091361--12091413	9	5.9	9	78	14	56	37	0	0	62	0.96
12091912--12091974	11	5.4	12	75	17	53	61	3	0	34	1.12
12092423--12092486	33	2.0	32	87	3	92	46	1	1	50	1.20
12092463--12092532	30	2.3	30	83	11	81	48	1	0	50	1.09
12092468--12092518	12	4.2	12	73	12	50	41	1	0	56	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12092599--12092643	18	2.6	17	83	10	56	35	4	0	60	1.17
12094454--12094787	162	2.0	163	96	1	616	39	9	8	41	1.70
12095989--12096080	48	1.9	48	86	0	130	19	18	19	42	1.90
12105718--12105767	21	2.5	20	83	3	64	42	2	34	22	1.65
12106097--12106156	23	2.6	23	79	10	68	18	5	8	68	1.34
12115840--12115900	25	2.6	23	73	23	63	77	1	16	4	1.03
12117133--12117180	23	2.1	23	88	0	69	77	12	0	10	1.00
12117255--12117289	16	2.1	16	89	5	52	65	0	0	34	0.93
12117255--12117294	17	2.4	16	87	4	53	65	0	0	35	0.93
12118531--12118614	3	28.3	3	90	2	134	63	0	0	36	0.95
12118941--12119043	27	3.9	26	79	15	97	57	21	1	19	1.51
12118950--12119043	13	7.2	13	78	8	102	57	21	2	19	1.51
12118969--12119043	39	1.9	38	91	2	123	58	21	0	20	1.39
12119162--12119190	7	4.1	7	100	0	58	72	0	13	13	1.13
12122975--12123009	3	11.7	3	100	0	70	68	0	0	31	0.90
12123633--12123719	26	3.4	26	95	1	149	50	3	18	27	1.63
12127206--12127241	17	2.1	17	100	0	72	52	11	25	11	1.69
12131120--12131145	12	2.2	12	100	0	52	92	0	7	0	0.39
12132897--12132953	24	2.4	24	82	5	62	52	14	19	14	1.74
12136152--12136373	119	1.9	119	85	0	309	42	5	18	32	1.75
12136364--12136433	26	2.6	27	80	13	74	75	0	15	8	1.03
12136368--12136432	18	3.6	18	85	2	76	76	0	15	7	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12136379--12136433	19	2.9	19	84	7	60	78	0	12	9	0.97
12136386--12136438	26	2.0	27	88	3	81	73	0	15	11	1.09
12137773--12137926	43	3.5	44	82	3	186	24	16	16	42	1.88
12137910--12137942	16	1.9	18	88	11	52	33	6	6	54	1.50
12137867--12137983	60	1.9	61	85	1	164	27	12	13	46	1.80
12137963--12138044	43	1.9	43	90	5	130	29	14	12	43	1.82
12155925--12156234	98	3.1	97	77	9	234	33	12	15	38	1.85
12155925--12156202	49	5.7	49	79	8	244	33	12	15	39	1.85
12155933--12156202	147	1.8	147	84	0	369	32	12	15	39	1.85
12156361--12156493	47	2.7	49	78	8	137	32	12	16	38	1.87
12157905--12157940	19	1.9	18	88	5	54	47	5	2	44	1.41
12161253--12161314	27	2.3	27	77	5	63	25	3	33	37	1.72
12166657--12167061	201	2.0	201	94	0	711	32	11	16	39	1.84
12169036--12169077	21	2.0	21	81	9	50	54	7	11	26	1.62
12170721--12170766	21	2.1	21	84	11	58	17	2	13	67	1.33
12171855--12171892	17	2.2	17	90	0	58	36	5	10	47	1.61
12171881--12171910	14	2.1	14	100	0	60	20	6	13	60	1.55
12171869--12172039	31	5.5	31	68	21	90	28	5	12	53	1.61
12171885--12172059	59	2.8	61	76	14	180	26	6	13	53	1.63
12171939--12172028	14	6.1	15	71	17	62	31	7	11	50	1.66
12190228--12190260	11	2.8	12	86	9	50	75	0	6	18	1.00
12193505--12193566	27	2.3	27	77	5	63	25	3	33	37	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12201238--12201279	21	2.0	21	81	9	50	54	7	11	26	1.62
12202942--12202987	21	2.1	21	84	11	58	17	2	13	67	1.33
12204089--12204126	17	2.2	17	90	0	58	36	5	10	47	1.61
12204126--12204300	31	5.6	31	69	14	117	25	5	13	55	1.60
12204116--12204307	60	3.2	60	82	6	210	25	6	14	54	1.63
12215368--12215424	26	2.1	27	80	3	62	56	8	10	24	1.61
12219487--12219518	3	10.7	3	100	0	64	65	0	34	0	0.93
12222479--12222540	26	2.2	29	83	16	78	43	0	0	56	0.99
12225257--12225292	18	2.0	18	89	10	56	77	0	8	13	0.98
12225532--12225584	22	2.4	21	81	9	70	28	0	0	71	0.86

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121