genome.fa.s79.2.7.7.80.10.50.1000.115.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167904.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_17, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  21107920

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   

This is table  115  of  121  ( 14423 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19778548--19778833	39	7.4	38	81	5	252	26	9	19	43	1.82
19778551--19778833	77	3.7	78	76	7	245	26	9	20	43	1.83
19778584--19778843	116	2.2	116	83	4	319	26	10	20	43	1.84
19779888--19779941	12	4.4	12	83	4	63	7	11	3	77	1.09
19779907--19779967	26	2.4	25	83	5	70	13	3	8	75	1.15
19779938--19779970	12	2.7	13	86	13	52	15	0	12	72	1.12
19780053--19780085	17	1.9	17	88	11	50	72	9	3	15	1.21
19780051--19780105	16	3.6	15	75	24	53	76	5	1	16	1.06
19781218--19781248	16	1.9	16	93	0	53	41	16	12	29	1.85
19781312--19781386	17	4.4	17	68	6	53	36	13	18	32	1.90
19785016--19785264	61	4.2	60	86	4	335	38	13	6	41	1.70
19785395--19785449	26	2.1	26	90	6	85	60	18	5	16	1.55
19785543--19785787	43	5.7	43	82	3	253	42	15	14	28	1.85
19786049--19786121	17	4.2	17	71	3	56	35	16	16	31	1.91
19786080--19786143	18	3.6	18	70	19	62	37	14	15	32	1.87
19786063--19786140	35	2.2	35	86	0	111	35	15	16	32	1.90
19786747--19786795	11	4.6	11	78	14	50	63	0	36	0	0.95
19787054--19787078	13	1.9	13	100	0	50	28	0	0	72	0.86
19787323--19787360	8	4.8	8	84	9	51	76	2	0	21	0.91
19788830--19788862	16	2.1	15	94	5	57	24	24	0	51	1.48
19799238--19799358	62	2.0	62	91	3	199	27	14	11	46	1.79
19799296--19799385	43	2.1	43	85	8	121	25	15	17	41	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19800973--19801081	54	2.0	56	82	10	136	44	8	15	31	1.76
19801698--19801767	17	4.1	17	80	7	79	30	15	21	32	1.94
19801673--19801767	34	2.8	34	75	13	97	31	16	22	29	1.96
19801715--19801781	34	2.0	34	82	5	82	34	14	19	31	1.92
19807997--19808149	73	2.1	73	95	2	272	49	4	10	35	1.58
19808160--19808216	30	1.9	29	85	3	78	57	1	8	31	1.39
19809266--19809303	18	2.0	20	85	10	53	76	2	2	18	1.02
19810831--19810857	2	13.5	2	100	0	54	48	0	0	51	1.00
19814565--19814726	88	1.9	88	84	3	220	42	13	12	30	1.82
19815005--19815047	17	2.5	17	84	3	59	39	16	13	30	1.87
19815257--19815316	3	20.7	3	86	6	88	35	1	0	63	1.05
19815754--19815881	51	2.5	52	82	7	138	33	14	14	37	1.87
19817136--19817171	18	2.0	18	88	0	54	41	8	8	41	1.65
19817248--19817325	34	2.3	34	84	6	104	33	12	19	34	1.90
19824103--19824127	2	12.5	2	100	0	50	48	0	0	52	1.00
19824199--19824233	6	5.7	6	89	3	52	48	0	0	51	1.00
19827810--19827964	52	3.0	50	83	5	184	28	23	7	40	1.81
19828970--19829030	30	2.0	30	84	12	81	39	9	3	47	1.53
19829758--19829801	22	2.0	22	95	0	79	40	20	4	34	1.73
19833210--19833410	43	4.7	42	78	7	181	44	15	10	28	1.81
19833209--19833411	44	4.7	44	80	7	220	44	16	10	28	1.81
19833659--19833698	17	2.4	17	86	0	53	40	17	10	32	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19833742--19833790	18	2.8	17	78	6	62	34	16	14	34	1.89
19833742--19833850	35	3.1	35	72	12	89	32	13	17	36	1.89
19833707--19833822	34	3.4	35	73	12	100	35	12	12	39	1.81
19833808--19833862	17	3.2	17	74	5	56	30	16	21	30	1.95
19833698--19833850	69	2.2	67	81	5	173	32	12	16	38	1.86
19833929--19834069	34	4.1	34	73	7	115	38	12	18	31	1.87
19833929--19834018	17	5.3	17	75	2	74	36	15	17	30	1.91
19834013--19834072	17	3.5	17	81	0	75	41	6	18	33	1.76
19836757--19836824	22	3.1	22	95	0	127	27	8	26	36	1.86
19840866--19840891	2	13.0	2	100	0	52	50	0	0	50	1.00
19842698--19842805	30	3.6	30	81	2	126	52	3	6	37	1.45
19845229--19845286	30	1.9	30	85	0	80	43	12	0	44	1.41
19846185--19846253	24	2.8	24	76	10	68	63	7	4	24	1.38
19847010--19847068	31	1.9	31	86	6	84	54	3	5	37	1.39
19847017--19847123	29	3.6	30	76	8	87	50	2	5	41	1.40
19850571--19850610	4	9.8	4	89	5	62	72	0	0	27	0.85
19850571--19850610	21	1.9	21	94	0	71	72	0	0	27	0.85
19850573--19850621	17	2.7	18	81	9	64	73	0	0	26	0.83
19853762--19853816	26	2.1	27	89	3	85	80	1	0	18	0.81
19853762--19853795	14	2.4	14	85	0	50	88	0	0	11	0.52
19853809--19853838	3	10.0	3	100	0	60	66	0	0	33	0.92
19865334--19865363	8	3.8	8	100	0	60	90	0	0	10	0.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19866348--19866468	62	2.0	62	91	3	199	27	16	10	45	1.80
19866406--19866495	43	2.1	42	87	8	128	25	16	17	40	1.91
19867444--19867468	13	1.9	13	100	0	50	28	0	0	72	0.86
19867712--19867753	17	2.4	18	80	11	61	76	2	0	21	0.90
19867712--19867752	9	4.8	9	85	8	59	78	2	0	19	0.87
19868108--19868227	56	2.1	57	81	9	138	49	9	12	29	1.71
19868668--19868780	35	3.3	35	70	9	97	31	14	21	32	1.93
19868836--19868905	17	4.1	17	80	7	79	30	15	21	32	1.94
19868811--19868905	34	2.8	34	75	13	97	31	16	22	29	1.96
19868853--19868919	34	2.0	34	82	5	82	34	14	19	31	1.92
19875158--19875310	73	2.1	73	97	0	288	49	4	9	35	1.56
19875321--19875377	30	1.9	29	82	10	71	59	1	8	29	1.38
19876353--19876444	25	3.8	24	71	17	73	63	3	3	30	1.26
19876385--19876422	20	2.0	20	84	5	51	65	2	0	31	1.06
19876430--19876467	18	2.0	20	85	10	53	76	2	2	18	1.02
19877997--19878031	2	17.5	2	93	0	61	45	0	2	51	1.16
19878102--19878136	6	5.7	6	89	3	52	48	0	0	51	1.00
19881360--19881398	5	7.8	5	100	0	78	0	17	0	82	0.68
19881758--19881961	44	4.7	44	76	12	172	43	11	13	31	1.80
19881784--19881944	88	1.8	87	85	4	225	42	11	13	31	1.81
19882223--19882265	17	2.5	17	80	3	50	37	16	16	30	1.91
19882475--19882541	3	22.7	3	85	8	93	34	1	0	64	1.03
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19884468--19884545	34	2.3	34	82	6	95	33	11	19	35	1.88
19884503--19884550	17	2.8	17	77	0	51	39	6	18	35	1.76
19884691--19884730	11	3.6	11	86	0	62	25	0	25	50	1.50
19889012--19889058	22	2.1	22	84	0	58	48	0	0	51	1.00
19889474--19889504	16	1.9	16	93	0	53	67	0	3	29	1.06
19889639--19889663	12	2.1	12	100	0	50	36	0	0	64	0.94
19890948--19890992	21	2.2	20	84	7	56	62	0	2	35	1.08
19890885--19890994	55	1.9	57	80	10	127	51	0	0	47	1.06
19891141--19891166	12	2.2	12	100	0	52	0	15	0	84	0.62
19893884--19893934	23	2.2	23	82	6	59	50	1	1	45	1.24
19894498--19894538	17	2.3	19	80	16	52	48	4	0	46	1.23
19895248--19895323	29	2.6	29	85	4	100	35	2	0	61	1.10
19896287--19896311	2	12.5	2	100	0	50	48	0	0	52	1.00
19896765--19896794	13	2.3	13	94	0	51	66	0	0	33	0.92
19897144--19897178	17	2.1	16	89	5	52	68	0	5	25	1.11
19897148--19897186	17	2.3	17	86	0	51	71	2	2	23	1.10
19899747--19899777	12	2.6	12	94	0	53	22	0	3	74	0.96
19901317--19901386	27	2.6	27	82	13	74	68	0	2	28	1.04
19902986--19903018	15	2.3	14	94	5	57	18	18	27	36	1.94
19903725--19903791	30	2.2	30	86	7	91	35	7	1	55	1.37
19903813--19903920	30	3.6	30	82	2	126	52	2	5	38	1.39
19904891--19904937	20	2.3	20	81	0	67	34	4	0	61	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19905462--19905510	23	2.1	23	84	0	62	51	0	0	48	1.00
19905548--19905605	21	2.8	20	73	17	55	56	1	5	36	1.32
19905974--19906056	36	2.3	37	79	10	91	59	2	0	38	1.11
19906186--19906236	26	2.0	26	88	3	77	31	1	0	66	1.03
19906190--19906244	26	2.1	26	86	0	74	40	1	0	58	1.09
19906190--19906257	26	2.6	26	80	2	73	39	2	0	57	1.14
19906832--19906857	6	4.3	6	100	0	52	46	0	0	53	1.00
19909890--19909938	25	2.0	25	84	15	66	46	2	4	46	1.33
19909876--19909948	33	2.2	33	80	4	85	50	2	2	43	1.30
19909927--19909971	23	2.0	22	82	4	54	48	2	2	46	1.26

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121