genome.fa.s79.2.7.7.80.10.50.1000.12.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167904.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_17, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  21107920

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   

This is table  12  of  121  ( 14423 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1800678--1800858	100	1.8	101	82	3	240	36	15	12	35	1.86
1800879--1801046	62	2.8	62	77	14	161	36	12	16	34	1.86
1801514--1801915	145	2.8	145	80	7	388	39	10	15	33	1.83
1809511--1809553	20	2.1	20	86	4	59	41	11	0	46	1.40
1810418--1811872	734	2.0	732	89	3	2264	31	17	18	32	1.94
1815607--1815887	137	2.1	135	83	5	352	29	18	16	35	1.93
1819920--1820038	31	3.8	31	88	4	186	42	10	16	31	1.82
1831110--1831172	30	2.1	29	85	8	83	50	3	0	46	1.17
1831925--1831953	12	2.4	12	100	0	58	34	0	0	65	0.93
1842021--1842266	135	1.8	135	90	0	402	28	17	21	32	1.96
1845265--1845310	24	2.0	23	82	4	56	39	2	0	58	1.10
1845587--1845677	44	2.1	44	85	4	121	50	2	7	39	1.43
1845618--1845695	11	7.1	11	75	5	77	52	0	6	41	1.27
1845618--1845744	44	2.9	43	81	4	137	51	1	8	37	1.42
1845618--1845744	66	1.9	66	84	6	168	51	1	8	37	1.42
1845595--1845765	22	7.8	22	77	7	107	50	2	9	37	1.49
1845659--1845778	44	2.7	44	80	5	118	50	3	9	36	1.51
1845856--1845905	11	4.5	11	87	0	73	58	0	2	40	1.10
1846009--1846099	11	8.4	11	68	11	53	53	3	3	39	1.33
1846012--1846078	15	4.6	14	73	10	55	52	1	4	41	1.31
1845964--1846070	55	1.9	55	86	3	153	51	1	7	39	1.41
1846013--1846279	22	12.2	21	73	7	106	52	4	4	38	1.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1846201--1846305	11	9.5	11	68	18	58	55	0	0	42	1.12
1846202--1846349	22	7.0	22	76	11	141	56	1	0	41	1.13
1846182--1846274	44	2.1	44	86	4	125	58	3	2	36	1.27
1846202--1846305	44	2.3	46	90	4	160	54	0	0	43	1.13
1846342--1846374	17	1.9	17	93	0	57	42	18	0	39	1.50
1849163--1849470	141	2.2	141	87	2	431	31	16	23	28	1.96
1863836--1863867	9	3.7	9	91	8	57	6	56	25	12	1.59
1863836--1863869	17	2.0	17	100	0	68	5	58	23	11	1.55
1863883--1864028	74	2.0	74	100	0	292	21	28	25	24	1.99
1863994--1864070	41	1.9	40	91	2	127	19	28	19	32	1.96
1866626--1866850	112	2.0	110	85	5	301	41	21	18	18	1.91
1873675--1873704	14	2.1	14	93	0	51	43	16	13	26	1.85
1879350--1879393	17	2.4	18	79	20	56	50	0	0	50	1.00
1891906--1892007	35	3.2	35	64	25	98	49	7	18	24	1.74
1891904--1892020	60	2.0	60	98	0	225	47	6	18	26	1.73
1893623--1893661	20	2.0	20	89	0	60	30	2	5	61	1.31
1893790--1893824	7	5.0	7	85	0	52	17	0	2	80	0.84
1902591--1902870	139	2.0	139	94	0	488	33	22	19	24	1.97
1903366--1903638	137	2.0	136	91	0	447	36	21	7	33	1.82
1904652--1904983	168	2.0	168	92	0	556	37	21	9	31	1.86
1911746--1911800	14	4.0	14	78	19	62	58	0	0	41	0.98
1911743--1911813	28	2.6	29	77	20	80	56	0	0	43	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1912106--1912232	65	2.0	65	89	6	195	24	24	12	38	1.90
1913534--1913590	21	2.7	20	77	20	53	54	1	0	43	1.10
1915005--1915045	22	1.9	21	85	14	57	36	2	7	53	1.42
1917304--1917334	13	2.4	13	88	0	53	29	29	6	35	1.82
1926709--1926765	15	3.7	15	79	11	53	10	24	1	63	1.36
1927002--1927038	19	2.0	18	89	5	56	27	0	2	70	1.01
1930381--1930429	18	2.8	17	81	6	71	61	0	0	38	0.96
1931076--1931107	2	16.0	2	100	0	64	50	0	0	50	1.00
1939534--1939581	5	10.0	5	78	17	57	62	0	0	37	0.95
1939534--1939586	15	3.7	14	80	12	63	62	0	0	37	0.96
1946006--1946035	13	2.3	13	94	0	51	30	0	6	63	1.20
1946767--1946824	18	3.2	18	75	4	64	44	0	0	55	0.99
1946761--1946830	31	2.3	31	85	11	92	50	0	0	50	1.00
1949170--1949404	89	2.6	89	77	14	241	43	5	4	45	1.49
1949568--1949660	37	2.5	37	81	10	102	45	6	3	45	1.45
1950400--1950442	21	2.0	21	82	8	52	60	4	4	30	1.37
1950611--1950644	16	2.1	16	88	0	50	32	8	0	58	1.29
1950677--1950701	13	1.9	13	100	0	50	8	0	4	88	0.64
1951260--1951611	194	1.8	195	85	2	501	27	24	10	37	1.89
1952620--1952685	33	2.0	34	90	3	107	27	7	21	43	1.79
1959482--1959548	31	2.2	31	91	0	116	34	13	29	22	1.92
1966397--1966430	17	1.9	18	88	5	52	26	2	2	67	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1966393--1966430	18	2.1	18	85	9	51	26	5	2	65	1.27
1966531--1966578	24	2.0	24	84	8	62	45	0	2	52	1.12
1968707--1968753	15	2.9	16	90	9	69	68	0	2	29	1.02
1970996--1971039	22	2.0	23	86	13	65	29	2	2	65	1.16
1980915--1980955	18	2.3	18	87	8	57	29	2	0	68	1.03
1981127--1981171	22	2.1	22	84	12	58	28	4	2	64	1.25
1981253--1981282	14	2.1	14	93	0	51	70	0	0	30	0.88
1981517--1981589	26	2.8	26	91	0	119	21	16	27	34	1.95
1983678--1983711	2	17.0	2	100	0	68	50	0	0	50	1.00
1984019--1984081	28	2.2	30	82	5	76	39	0	3	57	1.15
1984905--1984955	14	2.9	18	72	27	56	45	0	0	54	0.99
1985476--1985523	24	2.0	24	84	8	62	45	0	4	50	1.21
1985894--1985938	22	2.0	22	86	0	63	28	0	13	57	1.36
1985995--1986028	18	1.9	18	94	5	61	38	0	0	61	0.96
1986167--1986192	13	2.0	13	100	0	52	61	0	0	38	0.96
1986409--1986440	2	16.0	2	100	0	64	50	0	0	50	1.00
1986658--1986687	11	2.7	11	94	0	51	53	0	0	46	1.00
1987731--1987782	22	2.5	22	90	6	81	50	0	1	48	1.12
1987770--1987824	14	3.7	16	74	13	55	63	0	0	36	0.95
1987799--1987836	19	1.9	19	85	15	51	65	0	0	34	0.93
1999481--1999523	23	1.9	23	85	4	61	41	0	2	55	1.12
2006532--2006567	18	1.9	18	88	5	54	80	2	5	11	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2007672--2007723	16	3.3	16	75	20	56	26	0	1	71	0.97
2007775--2007824	21	2.4	21	75	15	50	50	0	0	50	1.00
2008389--2008415	14	1.9	14	100	0	54	62	0	0	37	0.95
2008844--2008873	15	1.9	15	93	6	51	73	0	0	26	0.84
2011281--2011319	15	2.6	15	83	0	51	23	20	38	17	1.93
2011285--2011394	48	2.3	48	90	3	168	24	12	47	15	1.80
2011403--2011452	15	3.3	15	77	0	55	32	18	36	14	1.90
2014408--2014440	16	2.1	16	88	5	50	84	3	9	3	0.82
2014395--2014439	20	2.1	21	84	8	56	84	2	4	8	0.84
2014527--2014557	13	2.4	13	94	0	53	67	3	0	29	1.06
2016210--2016241	16	1.9	17	93	6	57	65	0	0	34	0.93
2016634--2016660	2	13.5	2	100	0	54	48	0	0	51	1.00
2017085--2017162	24	3.0	24	72	25	61	35	0	1	62	1.03
2017083--2017173	25	3.4	25	73	19	69	36	1	1	61	1.10
2021967--2022003	2	19.0	2	91	5	58	45	2	0	51	1.15
2024538--2024657	60	2.0	60	95	0	213	25	10	30	34	1.90
2028604--2028630	2	13.5	2	100	0	54	51	0	0	48	1.00
2028747--2028787	20	2.0	21	85	4	57	53	2	0	43	1.13
2031246--2031273	1	28.0	1	100	0	56	0	0	0	100	0.00
2035589--2035630	2	22.0	2	90	9	70	52	0	47	0	1.00
2040068--2040101	17	2.0	17	94	0	59	38	11	5	44	1.65
2049789--2049830	17	2.5	17	77	14	50	0	23	0	76	0.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2049786--2049830	18	2.5	19	86	13	60	0	24	0	75	0.80
2049785--2049831	20	2.3	20	78	7	51	0	27	0	72	0.85
2052882--2052958	30	2.6	30	87	4	102	49	0	5	45	1.24
2054478--2054671	97	2.0	97	95	0	352	30	19	17	32	1.95
2056048--2056087	21	1.9	21	89	0	62	45	5	0	50	1.23
2060488--2060514	2	13.5	2	100	0	54	51	0	0	48	1.00
2063085--2063115	11	2.8	11	100	0	62	16	25	48	9	1.76
2070169--2070444	143	2.0	140	89	5	432	31	11	9	47	1.73
2079125--2079158	11	3.1	11	91	0	59	73	2	0	23	0.97
2081350--2081387	20	1.9	20	84	10	51	68	0	13	18	1.21

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121