genome.fa.s79.2.7.7.80.10.50.1000.105.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167904.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_17, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  21107920

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   

This is table  105  of  121  ( 14423 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17928733--17928801	21	3.2	20	80	17	68	69	1	4	24	1.15
17928742--17928789	17	2.8	17	84	9	62	70	2	6	20	1.19
17928716--17928804	25	3.6	25	73	10	69	71	1	4	22	1.10
17928771--17928852	27	3.4	24	74	14	71	73	1	4	20	1.09
17928718--17928887	44	4.0	42	73	16	111	70	1	4	22	1.15
17928720--17928839	17	7.2	17	68	20	58	70	1	5	22	1.18
17928811--17928881	28	2.4	30	86	9	94	71	1	2	23	1.07
17928777--17928849	24	3.0	24	73	15	69	71	1	5	21	1.14
17928731--17928890	85	1.9	83	82	11	200	69	2	5	23	1.20
17929039--17929127	31	2.9	31	89	0	133	37	21	7	33	1.82
17929060--17929114	10	5.4	10	74	20	51	36	23	9	30	1.86
17929379--17929411	16	2.1	16	88	11	50	30	12	24	33	1.91
17930319--17930399	27	3.3	25	76	15	89	11	13	0	75	1.05
17930344--17930381	15	2.4	16	86	8	51	2	18	0	78	0.86
17930757--17930796	9	4.3	9	84	6	53	5	10	0	85	0.75
17934986--17935021	18	2.0	18	88	0	54	33	27	19	19	1.96
17937068--17937094	2	13.5	2	100	0	54	48	0	0	51	1.00
17939333--17939368	2	18.0	2	94	0	63	50	2	0	47	1.15
17940752--17940816	25	2.4	26	80	17	71	12	4	7	75	1.17
17940976--17941011	16	2.2	16	90	0	54	55	11	0	33	1.35
17941003--17941047	18	2.5	18	85	0	63	37	2	11	48	1.51
17941003--17941040	6	6.3	6	90	0	58	36	2	13	47	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17941003--17941047	12	3.8	12	84	0	54	37	2	11	48	1.51
17951286--17951337	7	6.7	7	76	20	50	13	1	3	80	0.93
17951289--17951381	17	5.5	17	76	10	66	11	4	6	77	1.10
17951286--17951337	24	2.2	23	89	3	77	13	1	3	80	0.93
17951286--17951381	33	3.0	32	76	8	88	11	4	6	78	1.08
17956661--17956712	24	2.2	24	89	0	77	36	3	11	48	1.58
17956661--17956698	8	4.8	8	93	0	67	36	0	13	50	1.42
17958614--17958659	16	2.9	16	86	0	56	36	0	8	54	1.32
17958614--17958660	22	2.1	22	92	0	76	38	0	8	53	1.32
17964019--17964050	15	2.1	15	100	0	64	21	12	34	31	1.91
17965901--17965941	20	2.0	20	85	9	55	31	12	14	41	1.83
17973291--17973355	20	3.2	20	72	6	60	20	3	12	64	1.40
17973745--17973838	25	3.7	25	76	13	93	12	4	3	79	0.99
17973745--17973840	17	5.6	17	72	13	81	12	4	3	80	0.98
17973764--17973832	7	9.6	7	74	12	59	13	2	2	81	0.92
17979262--17979307	24	1.9	24	82	8	58	36	2	8	52	1.45
17980541--17980593	6	8.8	6	76	0	52	33	3	15	47	1.63
17980541--17980592	24	2.2	24	85	0	68	34	3	13	48	1.61
17982367--17982392	13	2.0	13	100	0	52	38	7	7	46	1.61
17985430--17985484	15	3.7	15	79	15	53	18	5	0	76	0.97
17985433--17985484	10	5.1	10	84	9	61	17	3	0	78	0.89
17987377--17987428	25	2.1	25	85	0	68	36	1	19	42	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17993954--17994001	25	2.0	24	88	8	71	52	0	0	47	1.00
17993982--17994019	20	1.9	20	84	10	51	65	2	0	31	1.06
17994579--17994628	22	2.3	22	82	3	57	54	4	12	30	1.55
17994740--17994785	19	2.5	18	89	3	65	63	0	0	36	0.95
17994797--17994843	19	2.5	20	86	6	62	42	2	0	55	1.12
17999991--18000091	49	2.1	49	92	0	166	26	23	6	42	1.79
18000002--18000104	49	2.1	49	83	3	127	29	23	8	38	1.85
18000363--18000491	64	2.0	64	95	0	231	46	17	15	20	1.84
18004124--18004149	13	2.0	13	100	0	52	61	23	0	15	1.33
18005730--18005912	99	1.9	93	87	6	267	36	14	10	37	1.82
18007976--18008009	10	3.5	10	88	4	52	91	8	0	0	0.43
18007977--18008010	17	2.0	17	88	0	50	88	11	0	0	0.52
18010168--18010201	18	1.9	18	88	5	52	32	11	11	44	1.77
18016061--18016095	17	2.1	16	89	5	52	2	14	0	82	0.77
18016591--18016629	11	3.5	11	89	0	60	17	0	28	53	1.44
18016654--18016798	52	2.8	52	85	2	175	42	8	22	26	1.83
18017296--18017380	31	2.7	31	88	0	134	32	23	22	21	1.98
18017374--18017456	25	3.4	25	74	14	82	38	9	33	18	1.83
18017702--18017742	11	3.7	11	93	0	73	17	0	29	53	1.44
18017779--18017921	52	2.8	52	82	7	157	43	8	21	26	1.81
18018410--18018494	31	2.7	31	87	0	125	30	22	23	23	1.99
18018833--18018871	11	3.5	11	82	0	51	20	0	25	53	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18018896--18019052	52	3.0	53	87	5	214	40	8	24	26	1.83
18019537--18019621	31	2.7	31	88	0	143	32	22	22	22	1.98
18019615--18019702	25	3.6	25	74	7	81	37	11	31	19	1.87
18019943--18019983	11	3.7	11	93	0	73	17	0	29	53	1.44
18020008--18020163	52	3.0	51	83	2	195	41	9	23	25	1.84
18020588--18020622	12	2.9	12	100	0	70	14	0	17	68	1.21
18020659--18020743	31	2.7	31	87	0	125	30	22	23	23	1.99
18021082--18021120	11	3.5	11	89	0	60	17	0	28	53	1.44
18021145--18021301	52	3.0	52	86	3	201	39	8	24	27	1.84
18025516--18025549	11	2.9	12	82	8	52	55	0	0	44	0.99
18026065--18026116	22	2.4	23	84	12	74	51	1	0	46	1.12
18028470--18028526	27	2.1	27	100	0	114	31	17	19	31	1.95
18028976--18029005	3	10.0	3	100	0	60	33	0	0	66	0.92
18029790--18029830	18	2.3	18	87	8	57	2	12	2	82	0.86
18029829--18029867	12	3.2	12	85	7	51	15	0	15	69	1.20
18029866--18029897	3	10.7	3	100	0	64	31	0	0	68	0.90
18030607--18030712	51	2.1	51	80	3	115	40	11	13	34	1.80
18030860--18030892	3	11.0	3	100	0	66	66	0	0	33	0.92
18039378--18039802	211	2.0	211	91	0	690	28	20	13	36	1.92
18040146--18040180	18	1.9	18	94	0	61	48	14	0	37	1.44
18048322--18048376	24	2.2	23	87	12	74	50	0	1	47	1.11
18048324--18048384	27	2.2	29	78	21	78	52	0	1	45	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18048346--18048443	33	2.8	36	78	10	121	56	2	2	39	1.23
18050178--18050232	3	18.0	3	96	3	101	34	0	0	65	0.93
18052029--18052154	14	8.7	14	70	16	51	20	0	29	50	1.49
18052108--18052228	16	7.6	16	70	15	65	20	0	28	49	1.55
18052168--18052238	17	4.2	16	78	10	72	15	1	28	54	1.49
18053481--18053535	23	2.4	23	81	6	67	25	10	40	23	1.87
18053703--18053748	16	2.9	16	83	3	58	0	8	8	82	0.84
18053761--18053801	3	14.7	3	80	14	52	34	0	0	65	0.93
18054007--18054044	19	2.0	19	89	0	58	42	10	0	47	1.38
18056674--18056713	21	1.9	21	84	0	53	27	5	17	50	1.67
18057534--18057567	17	2.0	17	94	0	59	32	17	2	47	1.63
18058539--18058569	16	1.9	16	93	0	53	32	9	22	35	1.87
18060730--18060784	20	2.8	19	79	17	51	49	3	0	47	1.19
18060767--18060879	20	5.4	21	80	9	117	50	4	0	44	1.28
18060724--18060861	30	4.5	31	68	19	83	50	5	0	43	1.29
18060767--18060879	21	5.4	21	75	13	76	50	4	0	44	1.28
18060884--18060954	28	2.5	28	75	6	72	36	4	2	56	1.34
18060931--18060982	11	4.3	12	79	11	54	40	1	1	55	1.22
18060932--18061123	28	6.6	28	70	14	97	42	4	1	51	1.32
18061027--18061051	10	2.5	10	100	0	50	24	8	0	68	1.16
18060985--18061121	55	2.5	57	87	7	203	43	5	0	50	1.29
18061094--18061198	25	4.5	23	70	26	69	39	0	1	58	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18061107--18061158	22	2.4	22	84	12	63	38	0	3	57	1.17
18061298--18061343	14	3.2	14	75	25	51	52	0	0	47	1.00
18061297--18061363	28	2.5	28	88	9	95	52	0	0	47	1.00
18061307--18061361	14	3.9	15	77	15	55	54	0	0	45	0.99
18061372--18061425	22	2.4	22	82	17	67	44	0	0	55	0.99
18061501--18061543	22	2.0	22	85	0	59	39	0	2	58	1.11
18061556--18061677	10	12.6	10	69	18	57	38	2	2	56	1.26
18061566--18061607	18	2.3	18	88	8	59	38	0	0	61	0.96
18065282--18065345	29	2.2	29	91	0	101	26	14	20	39	1.90
18068020--18068048	10	2.7	11	94	5	51	0	13	0	86	0.58

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121