genome.fa.s79.2.7.7.80.10.50.1000.52.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167904.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_17, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  21107920

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   

This is table  52  of  121  ( 14423 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9161604--9161733	29	4.6	29	68	16	78	45	1	3	50	1.26
9161671--9161719	21	2.3	22	79	13	57	48	0	0	51	1.00
9162331--9162363	18	1.9	17	88	11	50	48	6	6	39	1.53
9162565--9162627	28	2.2	28	81	13	67	47	0	1	50	1.10
9162649--9162693	14	3.3	14	84	9	58	46	0	4	48	1.22
9163015--9163171	16	9.9	15	66	22	65	47	1	2	48	1.23
9162983--9163043	25	2.4	25	84	10	63	45	3	0	50	1.17
9163005--9163129	32	3.8	34	72	18	113	48	1	1	48	1.20
9163464--9163539	20	3.9	19	72	17	66	47	0	1	51	1.09
9163464--9163543	29	2.7	28	73	22	74	46	0	2	51	1.14
9164239--9164285	15	3.2	14	77	17	51	36	0	2	61	1.08
9164226--9164297	29	2.5	29	84	6	94	38	0	1	59	1.06
9164249--9164302	19	2.8	20	83	13	76	35	0	1	62	1.06
9164226--9164297	10	7.6	10	72	18	57	38	0	1	59	1.06
9164531--9164579	23	2.0	24	85	14	66	48	4	0	46	1.20
9165048--9165130	17	4.7	16	68	22	51	50	2	1	45	1.22
9165077--9165127	13	4.2	12	80	14	61	52	1	0	45	1.12
9165090--9165129	4	11.0	4	80	20	52	52	0	0	47	1.00
9165077--9165127	24	2.1	24	92	0	84	52	1	0	45	1.12
9165090--9165129	13	2.8	15	85	14	66	52	0	0	47	1.00
9165165--9165216	17	2.9	17	78	10	59	57	1	0	40	1.10
9166016--9166129	20	5.7	20	69	15	74	46	2	1	49	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9165991--9166095	38	2.9	37	72	18	94	43	1	1	52	1.23
9166699--9166739	13	3.2	14	80	19	54	53	4	0	41	1.22
9166729--9166794	14	4.7	15	73	19	54	50	1	1	46	1.20
9166830--9166865	18	1.9	19	88	5	56	55	5	2	36	1.38
9166762--9166912	18	8.1	18	65	22	53	49	3	3	44	1.35
9167580--9167622	22	2.0	21	86	4	59	55	2	2	39	1.25
9168132--9168161	14	2.1	14	93	0	51	53	0	0	46	1.00
9168409--9168461	16	3.1	17	81	15	56	56	1	0	41	1.10
9168451--9168492	20	2.0	22	86	9	61	40	4	0	54	1.21
9168540--9168612	19	3.6	20	80	12	69	39	1	1	57	1.16
9168818--9168868	27	1.9	26	92	4	84	47	0	3	49	1.20
9168961--9169015	25	2.1	25	83	10	65	49	0	1	49	1.11
9168979--9169033	25	2.2	25	87	6	76	50	0	1	47	1.11
9169087--9169128	18	2.6	16	81	11	50	50	4	0	45	1.23
9169397--9169426	13	2.3	13	94	0	51	36	3	6	53	1.44
9169907--9169944	19	2.0	20	85	15	53	52	2	7	36	1.45
9169978--9170062	19	4.3	20	76	18	72	47	0	1	51	1.08
9169989--9170053	19	3.5	19	82	14	73	47	0	1	50	1.10
9169979--9170059	28	2.9	27	80	14	76	48	0	1	50	1.08
9170015--9170065	13	3.8	14	75	15	54	49	0	1	49	1.12
9169980--9170074	18	5.6	17	73	17	65	49	0	1	49	1.07
9170026--9170078	19	2.8	19	81	13	65	49	0	1	49	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9170421--9170445	13	1.9	13	100	0	50	52	0	8	40	1.31
9170553--9170577	13	1.9	13	100	0	50	48	4	0	48	1.20
9170595--9170646	17	3.1	17	78	13	54	44	0	3	51	1.19
9170648--9170677	16	1.9	15	93	6	51	36	0	0	63	0.95
9172185--9172235	24	2.1	24	86	13	70	45	3	0	50	1.20
9172312--9172355	22	2.0	21	91	4	70	43	0	0	56	0.99
9172313--9172368	19	2.8	20	86	8	69	42	0	0	57	0.99
9172948--9173456	181	2.8	179	76	6	484	42	10	7	39	1.67
9173559--9173597	17	2.4	17	91	4	62	43	0	0	56	0.99
9173739--9173805	26	2.5	26	76	9	73	35	1	4	58	1.28
9173740--9173807	27	2.4	29	73	11	70	35	1	4	58	1.27
9173840--9174955	181	6.2	180	75	10	812	39	7	9	42	1.66
9174493--9174525	18	1.9	17	88	11	50	42	6	15	36	1.71
9174950--9174993	14	3.1	14	81	12	54	54	0	0	45	0.99
9174950--9175007	28	2.0	29	83	9	75	48	0	0	51	1.00
9175147--9175207	16	3.5	18	76	19	67	45	1	1	50	1.21
9175219--9175252	16	2.1	17	88	5	52	52	2	2	41	1.31
9175315--9175402	38	2.5	34	77	18	90	42	2	0	55	1.12
9175311--9175356	23	2.0	23	82	0	56	47	0	0	52	1.00
9175408--9175440	17	2.0	17	88	5	50	51	6	3	39	1.42
9175616--9175688	7	10.0	7	78	14	67	17	1	4	76	1.01
9175619--9175674	22	2.5	23	85	8	71	16	1	5	76	1.05
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9175606--9175688	37	2.2	38	83	12	100	18	1	3	77	0.99
9175666--9175780	3	34.7	3	72	19	54	30	5	0	63	1.22
9175663--9175775	35	3.4	31	76	19	104	30	5	0	63	1.22
9175694--9175824	31	4.2	31	70	15	101	29	4	1	64	1.23
9175666--9175774	27	3.8	28	72	23	84	29	5	0	64	1.22
9175662--9175786	15	7.5	17	73	18	77	29	4	0	64	1.19
9175661--9175787	31	4.8	25	68	29	70	29	4	0	65	1.18
9175742--9175821	21	3.9	21	80	8	92	27	5	1	66	1.20
9175735--9175806	17	4.2	17	78	8	58	26	4	0	69	1.06
9175742--9175821	42	1.9	41	87	2	115	27	5	1	66	1.20
9175766--9175847	42	2.0	42	85	0	110	23	6	1	69	1.18
9176672--9176743	6	13.4	5	88	11	83	18	2	0	79	0.86
9176675--9176743	10	6.3	11	80	12	88	17	2	0	79	0.85
9176760--9177044	59	4.8	60	87	6	357	41	6	13	38	1.70
9176762--9177044	119	2.4	118	87	5	399	41	6	13	38	1.70
9178046--9178081	15	2.3	16	90	4	56	27	5	8	58	1.50
9187469--9187493	9	2.8	9	100	0	50	84	0	8	8	0.79
9187456--9187507	12	4.6	12	81	13	65	80	0	9	9	0.90
9187457--9187506	21	2.3	21	93	3	82	80	0	10	10	0.92
9188462--9188503	22	1.9	22	85	0	57	30	23	9	35	1.87
9188532--9188934	42	9.4	42	79	8	336	25	15	19	39	1.91
9188511--9188937	86	5.0	83	80	8	396	25	15	18	40	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9188532--9188937	171	2.4	170	80	9	477	25	16	19	39	1.91
9188511--9188937	215	2.0	210	82	6	522	25	15	18	40	1.90
9189236--9189375	4	36.5	4	72	14	68	30	4	0	65	1.11
9189248--9189355	3	33.7	3	72	20	60	31	4	0	63	1.14
9189243--9189327	31	2.7	32	87	3	118	30	4	0	64	1.14
9189240--9189420	97	1.9	97	83	11	237	28	5	0	65	1.19
9189236--9189335	15	6.3	17	75	13	88	30	4	0	66	1.10
9189241--9189376	17	8.4	16	68	19	52	30	4	0	65	1.12
9189314--9189397	43	1.9	44	88	7	127	28	5	1	64	1.24
9189309--9189408	21	4.6	21	78	5	83	29	6	1	64	1.24
9189309--9189408	43	2.3	44	81	6	123	29	6	1	64	1.24
9190318--9190370	6	9.2	6	85	10	67	16	3	0	79	0.88
9190318--9190370	11	4.6	11	84	11	63	16	3	0	79	0.88
9190318--9190377	12	5.1	12	73	17	54	18	3	0	78	0.89
9190395--9190616	58	3.7	58	80	11	225	42	5	12	40	1.65
9191210--9191775	181	3.2	177	80	3	618	41	10	7	40	1.69
9192493--9192815	175	1.8	175	89	4	508	40	8	11	40	1.70
9194080--9195108	180	5.8	176	74	9	676	41	10	8	39	1.69
9195261--9195326	16	4.4	15	76	16	50	62	4	1	31	1.25
9196270--9196306	9	4.2	9	86	6	58	56	0	0	43	0.99
9196262--9196304	17	2.5	17	92	3	68	55	0	0	44	0.99
9196320--9196358	19	2.1	19	85	9	53	46	2	2	48	1.29
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9196820--9196858	19	2.1	19	85	0	51	41	7	10	41	1.68
9197082--9197136	14	4.0	14	78	4	58	52	3	0	43	1.18
9197709--9197741	13	2.4	14	90	10	50	51	0	6	42	1.26
9198376--9198416	14	2.7	15	92	7	66	56	0	0	43	0.99
9198574--9198655	44	1.9	42	85	9	112	47	1	2	48	1.22
9200843--9200923	40	2.0	41	83	7	103	46	0	2	50	1.14
9200872--9200920	12	3.9	12	78	7	53	51	0	0	48	1.00
9201181--9201232	23	2.3	22	84	15	63	44	0	0	55	0.99
9201187--9201300	18	6.4	18	68	19	53	40	4	1	53	1.31
9201317--9201362	15	3.1	15	82	11	51	50	2	0	47	1.13

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121